mRNA_H-elongata_contig121846.1671.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig121846.1671.1
Unique Name	mRNA_H-elongata_contig121846.1671.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.430e-34
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKST------------GMPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKALH 288
            +E+ELR+Y+AEDP  EE DFSLLEFW+ +S             G+P LALIARL++GIE TSCQ ERNFS LAFL+G LRS+  PGKVERLM LRLNRL+I E+KALH
Sbjct:  367 VERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALH 474

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 5.530e-34
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKST------------GMPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKALH 288
            +E+ELR+Y+AEDP  EE DFSLLEFW+ +S             G+P LALIARL++GIE TSCQ ERNFS LAFL+G LRS+  PGKVERLM LRLNRL+I E+KALH
Sbjct:  695 VERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALH 802

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.460e-21
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKSTG--------------MPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKAL 285
            IE+E+ +Y+AE  Q E  DF++L FW  + T               MP+LA IARL+ GIE +SCQ ERNFS L+ L+GHLR      KVER+ML+RLNR  + E++ L
Sbjct:  127 IEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVREL 235

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.620e-21
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKSTG--------------MPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKA 282
            IE+E+ +Y+AE PQ +   F+L+ FW  + T               MP+LA IARL+ GIE TSCQ ERNFS LA L+G+LR    P +VER+ML+RLNR  + E++A
Sbjct:  401 IEREMLVYLAEQPQLDVDGFNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLDEVRA 508

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.020e-21
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKSTG--------------MPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKAL 285
            IE+E+ +Y+AE+PQ +   F++L +W  + T               MP+LA IARLY GIE TSCQ ERNFS LA L+G LR    P KVER+M +RLNR  ++E++ L
Sbjct:  509 IEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVREL 617

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.120e-21
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKSTG--------------MPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKAL 285
            IE+E+ +Y+AE+PQ +   F++L +W  + T               MP+LA IARLY GIE TSCQ ERNFS LA L+G LR    P KVER+M +RLNR  ++E++ L
Sbjct:  704 IEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVREL 812

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.180e-20
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKSTG--------------MPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKAL 285
            IE+E+ +Y+AE PQ +   F+L+ FW  + T               MP+LA IARL+ GIE TSCQ ERNFS LA L+G LR      KVER+ML+RLNR  ++E++AL
Sbjct:  387 IEREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLLAEVRAL 495

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.310e-20
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKSTG--------------MPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKAL 285
            IE+E+ +Y+AE  Q E  DF++L FW  + T               MP+LA IARL+ GIE +SCQ ERNFS L+ L+GHLR      KVER+ML+RLNR  + E++ L
Sbjct:  692 IEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVREL 800

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.110e-19
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKSTG--------------MPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKA 282
            IE+E+ +Y+AE PQ +  DF+LL FW  + T               MP+LA IARL+ GIE TSCQ ERNFS LA L+G L       +VER+ML+RLN+  ++E++A
Sbjct:  505 IEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLLAEVRA 612

[Close]

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.240e-19
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 1

Query:    1 IEKELRLYMAEDPQPEEADFSLLEFWKGKSTG--------------MPFLALIARLYNGIEPTSCQVERNFSVLAFLLGHLRSTTKPGKVERLMLLRLN 255
            IE+E+ +Y+AE PQ +  DF+LL FW  + T               MP+LA IARL+ GIE TSCQ ERNFS LA L+G  R      +VER+ML+RLN
Sbjct:  122 IEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot

BLAST of mRNA_H-elongata_contig121846.1671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5KAN7_9PHAE	1.430e-34	63.89	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KJ52_9PHAE	5.530e-34	63.89	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KJT6_9PHAE	3.460e-21	46.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXV5_9PHAE	4.620e-21	47.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTB8_9PHAE	5.020e-21	46.79	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JGG8_9PHAE	5.120e-21	46.79	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5KDJ6_9PHAE	2.180e-20	47.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRT6_9PHAE	3.310e-20	46.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQI6_9PHAE	2.110e-19	46.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7P7_9PHAE	3.240e-19	48.48	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig121846	contig	H-elongata_contig121846:1250..1537 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	288
Cds size	264
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929717.4380634-CDS-H-elongata_contig121846:1249..1513	1622929717.4380634-CDS-H-elongata_contig121846:1249..1513	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig121846 1250..1513 -
1691679130.5611138-CDS-H-elongata_contig121846:1249..1513	1691679130.5611138-CDS-H-elongata_contig121846:1249..1513	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig121846 1250..1513 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929717.4620955-UTR-H-elongata_contig121846:1513..1537	1622929717.4620955-UTR-H-elongata_contig121846:1513..1537	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig121846 1514..1537 -
1691679130.570198-UTR-H-elongata_contig121846:1513..1537	1691679130.570198-UTR-H-elongata_contig121846:1513..1537	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig121846 1514..1537 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig121846.1671.1	prot_H-elongata_contig121846.1671.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig121846 1250..1513 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig121846:1250..1537-
coding sequence from alignment at H-elongata_contig121846:1250..1537-

protein sequence of mRNA_H-elongata_contig121846.1671.1

>prot_H-elongata_contig121846.1671.1 ID=prot_H-elongata_contig121846.1671.1|Name=mRNA_H-elongata_contig121846.1671.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MAEDPQPEEADFSLLEFWKGKSTGMPFLALIARLYNGIEPTSCQVERNFS
VLAFLLGHLRSTTKPGKVERLMLLRLNRLFISEIKALH

mRNA from alignment at H-elongata_contig121846:1250..1537-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig121846.1671.1 ID=mRNA_H-elongata_contig121846.1671.1|Name=mRNA_H-elongata_contig121846.1671.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig121846:1250..1537- (Himanthalia elongata Himel1 dioecious)
ATTGAAAAGGAGCTGCGGTTATACATGGCGGAAGACCCTCAACCGGAGGA
GGCCGACTTTTCGCTCCTAGAGTTCTGGAAGGGTAAGAGCACGGGAATGC
CGTTTTTGGCGCTTATCGCCCGGCTTTACAACGGGATTGAGCCTACCAGC
TGCCAGGTGGAGAGGAACTTCTCAGTCCTTGCTTTCCTTCTCGGCCACCT
GAGAAGCACGACCAAACCCGGCAAGGTGGAGCGATTGATGCTTCTGCGAC
TCAACAGACTCTTCATTTCGGAGATCAAGGCTCTCCAC

Coding sequence (CDS) from alignment at H-elongata_contig121846:1250..1537-

>mRNA_H-elongata_contig121846.1671.1 ID=mRNA_H-elongata_contig121846.1671.1|Name=mRNA_H-elongata_contig121846.1671.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig121846:1250..1537- (Himanthalia elongata Himel1 dioecious)
ATGGCGGAAGACCCTCAACCGGAGGAGGCCGACTTTTCGCTCCTAGAGTT
CTGGAAGGGTAAGAGCACGGGAATGCCGTTTTTGGCGCTTATCGCCCGGC
TTTACAACGGGATTGAGCCTACCAGCTGCCAGGTGGAGAGGAACTTCTCA
GTCCTTGCTTTCCTTCTCGGCCACCTGAGAAGCACGACCAAACCCGGCAA
GGTGGAGCGATTGATGCTTCTGCGACTCAACAGACTCTTCATTTCGGAGA
TCAAGGCTCTCCACATGGCGGAAGACCCTCAACCGGAGGAGGCCGACTTT
TCGCTCCTAGAGTTCTGGAAGGGTAAGAGCACGGGAATGCCGTTTTTGGC
GCTTATCGCCCGGCTTTACAACGGGATTGAGCCTACCAGCTGCCAGGTGG
AGAGGAACTTCTCAGTCCTTGCTTTCCTTCTCGGCCACCTGAGAAGCACG
ACCAAACCCGGCAAGGTGGAGCGATTGATGCTTCTGCGACTCAACAGACT
CTTCATTTCGGAGATCAAGGCTCTCCAC