mRNA_H-elongata_contig121779.1665.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121779.1665.1
Unique NamemRNA_H-elongata_contig121779.1665.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A6H5L5U7_9PHAE (SRP54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.680e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 QVASAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            QVAS ADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTK+DGDTRGGAALSVQ
Sbjct:   48 QVASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQ 102
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BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.770e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 QVASAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            QVAS ADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTK+DGDTRGGAALSVQ
Sbjct:  305 QVASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQ 359
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BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: C1FE02_MICCC (Type II secretory pathway family n=2 Tax=Micromonas TaxID=38832 RepID=C1FE02_MICCC)

HSP 1 Score: 82.0 bits (201), Expect = 6.880e-17
Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 QVASAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            ++A+AADE+LLVVDAMTGQEAA L + F+E +GITGAVLTK+DGDTRGGAALSV+
Sbjct:  294 KIATAADEILLVVDAMTGQEAAALTAAFDEAVGITGAVLTKMDGDTRGGAALSVR 348
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BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: R7QHF1_CHOCR (Signal recognition particle SRP54 homolog ffh n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHF1_CHOCR)

HSP 1 Score: 81.6 bits (200), Expect = 8.750e-17
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   10 SAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            S ADE LLVVDAMTGQEAATL   FN+++GITGA+LTKLDGDTRGGAALSVQ
Sbjct:  197 SKADETLLVVDAMTGQEAATLTRSFNDEVGITGAILTKLDGDTRGGAALSVQ 248
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BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A835YMH5_9STRA (SRP54-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.420e-17
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:   19 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            DEVLLVVDAMTGQEAATL + FNE++GITGA+LTKLDGD+RGG+ALSVQ
Sbjct:  303 DEVLLVVDAMTGQEAATLTAAFNERVGITGAILTKLDGDSRGGSALSVQ 351
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BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A2V3IRY4_9FLOR (Signal recognition particle protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY4_9FLOR)

HSP 1 Score: 80.9 bits (198), Expect = 1.680e-16
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   19 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            DE LLVVDAMTGQEAATL   FNE++GITGA+LTKLDGDTRGGAALSVQ
Sbjct:  216 DETLLVVDAMTGQEAATLTRSFNEEVGITGAILTKLDGDTRGGAALSVQ 264
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BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: B4VXP3_9CYAN (Signal recognition particle protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VXP3_9CYAN)

HSP 1 Score: 80.9 bits (198), Expect = 1.690e-16
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:   19 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            DEVLLVVDAMTGQEAATL   FN++IGITGA+LTKLDGDTRGGAALSV+
Sbjct:  214 DEVLLVVDAMTGQEAATLTHTFNQQIGITGAILTKLDGDTRGGAALSVR 262
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BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A7S0VH70_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VH70_9CRYP)

HSP 1 Score: 79.3 bits (194), Expect = 3.900e-16
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   19 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            DEVLLVVDAMTGQEAA L   FN+ +GITGAVLTKLDGDTRGGAALSVQ
Sbjct:  299 DEVLLVVDAMTGQEAANLTKSFNDAVGITGAVLTKLDGDTRGGAALSVQ 347
[Close]
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A7S0TI92_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TI92_HEMAN)

HSP 1 Score: 79.3 bits (194), Expect = 5.630e-16
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   19 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            DEVLLVVDAMTGQEAA L   FN+ +GITGAVLTKLDGDTRGGAALSVQ
Sbjct:  305 DEVLLVVDAMTGQEAANLTKSFNDAVGITGAVLTKLDGDTRGGAALSVQ 353
[Close]
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A1X6NS89_PORUM (SRP54 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NS89_PORUM)

HSP 1 Score: 77.8 bits (190), Expect = 7.900e-16
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   19 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 165
            DE LLVVDAMTGQEAA L   FN+ +GITGA+LTKLDGDTRGGAALSVQ
Sbjct:   14 DETLLVVDAMTGQEAANLTRAFNDDVGITGAILTKLDGDTRGGAALSVQ 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U7_9PHAE2.680e-2496.36SRP54 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LN22_ECTSI8.770e-2296.36PFfh, plastid Ffh subunit of the signal recognitio... [more]
C1FE02_MICCC6.880e-1776.36Type II secretory pathway family n=2 Tax=Micromona... [more]
R7QHF1_CHOCR8.750e-1782.69Signal recognition particle SRP54 homolog ffh n=1 ... [more]
A0A835YMH5_9STRA9.420e-1783.67SRP54-type protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A2V3IRY4_9FLOR1.680e-1685.71Signal recognition particle protein n=1 Tax=Gracil... [more]
B4VXP3_9CYAN1.690e-1685.71Signal recognition particle protein n=1 Tax=Coleof... [more]
A0A7S0VH70_9CRYP3.900e-1685.71Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0TI92_HEMAN5.630e-1685.71Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A1X6NS89_PORUM7.900e-1681.63SRP54 domain-containing protein n=1 Tax=Porphyra u... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121779contigH-elongata_contig121779:1659..1823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.8e-18
Seed eggNOG ortholog2880.D8LN22
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
EC3.6.5.4
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.8440466-CDS-H-elongata_contig121779:1658..18231622929716.8440466-CDS-H-elongata_contig121779:1658..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121779 1659..1823 -
1691679130.3376942-CDS-H-elongata_contig121779:1658..18231691679130.3376942-CDS-H-elongata_contig121779:1658..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121779 1659..1823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121779.1665.1prot_H-elongata_contig121779.1665.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121779 1659..1823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121779.1665.1

>prot_H-elongata_contig121779.1665.1 ID=prot_H-elongata_contig121779.1665.1|Name=mRNA_H-elongata_contig121779.1665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
QVASAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGA
ALSVQ
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mRNA from alignment at H-elongata_contig121779:1659..1823-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121779.1665.1 ID=mRNA_H-elongata_contig121779.1665.1|Name=mRNA_H-elongata_contig121779.1665.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig121779:1659..1823- (Himanthalia elongata Himel1 dioecious)
CAGGTAGCGTCTGCGGCCGACGAGGTGTTGCTCGTGGTGGACGCCATGAC
CGGGCAAGAGGCGGCAACGCTGGCGTCGGTTTTCAACGAAAAGATTGGCA
TTACCGGGGCGGTACTCACGAAGCTCGACGGCGACACTCGGGGAGGCGCC
GCCCTCTCTGTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig121779:1659..1823-

>mRNA_H-elongata_contig121779.1665.1 ID=mRNA_H-elongata_contig121779.1665.1|Name=mRNA_H-elongata_contig121779.1665.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig121779:1659..1823- (Himanthalia elongata Himel1 dioecious)
CAGGTAGCGTCTGCGGCCGACGAGGTGTTGCTCGTGGTGGACGCCATGAC
CGGGCAAGAGGCGGCAACGCTGGCGTCGGTTTTCAACGAAAAGATTGGCA
TTACCGGGGCGGTACTCACGAAGCTCGACGGCGACACTCGGGGAGGCGCC
GCCCTCTCTGTACAGCAGGTAGCGTCTGCGGCCGACGAGGTGTTGCTCGT
GGTGGACGCCATGACCGGGCAAGAGGCGGCAACGCTGGCGTCGGTTTTCA
ACGAAAAGATTGGCATTACCGGGGCGGTACTCACGAAGCTCGACGGCGAC
ACTCGGGGAGGCGCCGCCCTCTCTGTACAG
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