mRNA_H-elongata_contig121731.1662.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121731.1662.1
Unique NamemRNA_H-elongata_contig121731.1662.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: D7FLR4_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.030e-15
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   13 DSGSDVQRGTKPNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKV 165
            D G      +KPNVFFFLIDDMG  D+GYQSTDL EITPNLDALAAGG+K+
Sbjct:  206 DGGPGSVSTSKPNVFFFLIDDMGFGDMGYQSTDLSEITPNLDALAAGGVKL 256
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BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: A0A6H5K4V1_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.460e-14
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 GEGSDSGSDVQRGTKPNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGI 159
            G G  S   V   +KPNVFFFL+DDMG  D+GYQSTDL EITPNLDALAAGG+
Sbjct:  175 GNGDGSPGSVST-SKPNVFFFLVDDMGFGDMGYQSTDLSEITPNLDALAAGGL 226
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BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: A0A6H5JIE9_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIE9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.420e-11
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   43 KPNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKV 165
            KPNVFF ++DDMG  DIGYQS DL+ +TP+LD LAAGG+K+
Sbjct:  151 KPNVFFIMVDDMGWNDIGYQSVDLQGVTPHLDRLAAGGVKM 191
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BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: A0A6H5L6W1_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6W1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.130e-10
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   43 KPNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKV 165
            +PNVFF +IDDMG  DIGYQS DL+ +TP LD LAAGG+K+
Sbjct:   59 RPNVFFIMIDDMGWDDIGYQSVDLKRVTPVLDKLAAGGVKM 99
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BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: D7G1A6_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A6_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.110e-10
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   46 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKV 165
            PNVFF +IDDMG  DIGY STDL  +TPNLD L+A G+KV
Sbjct:  112 PNVFFIMIDDMGWNDIGYHSTDLANVTPNLDRLSASGVKV 151
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BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: A0A6H5JFF9_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.010e-9
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   43 KPNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKV 165
            KPNVFF +IDDMG  D+GYQSTD+  +TPNL+ LA  G+K+
Sbjct:   96 KPNVFFIIIDDMGWNDMGYQSTDMHAVTPNLNRLAESGVKL 136
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BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: A0A7S2DHD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHD1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.170e-8
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   16 SGSDVQRGTKP-----NVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGI 159
            +GS  + GT       ++FFFLIDDMG+ DIGYQS DL   TP +D LA+ G+
Sbjct:  119 TGSVTEEGTSSMNASYSIFFFLIDDMGYNDIGYQSVDLPHATPTMDRLASSGV 171
[Close]
BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: A0A6H5KNM1_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM1_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 9.490e-8
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   46 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKV 165
            PNV F LIDD+G  DIGYQSTDL E+TP +D+L++ G+++
Sbjct:  167 PNVIFILIDDVGTNDIGYQSTDLWELTPFMDSLSSEGVRL 206
[Close]
BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: A0A7S3XS51_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS51_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 1.410e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   46 PNVFFFLIDDMGHADIGYQSTD---LREITPNLDALAAGGIKVGWEF 177
            P+V FFLIDD G  D+GYQ+T    ++  TPNLDA AA G+K+ W +
Sbjct:  136 PHVVFFLIDDQGFDDMGYQTTSNDYMKTFTPNLDAYAATGVKLNWYY 182
[Close]
BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Match: D7FLS1_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS1_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.500e-7
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   46 PNVFFFLIDDMGHADIGYQSTDLREITPNLDALAAGGIKV 165
            PNV F LIDD+G  DIGYQSTDL E+TP +D+L++ G+++
Sbjct:  120 PNVIFILIDDVGTNDIGYQSTDLWELTPFMDSLSSEGVRL 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121731.1662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLR4_ECTSI2.030e-1572.55Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]
A0A6H5K4V1_9PHAE2.460e-1469.81Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JIE9_9PHAE4.420e-1168.29Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L6W1_9PHAE1.130e-1068.29Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
D7G1A6_ECTSI2.110e-1070.00Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]
A0A6H5JFF9_9PHAE1.010e-963.41Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2DHD1_9STRA5.170e-850.94Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5KNM1_9PHAE9.490e-860.00Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3XS51_HETAK1.410e-753.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FLS1_ECTSI1.500e-760.00Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121731contigH-elongata_contig121731:1410..1592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog2880.D7FLR4
KEGG koko:K01280
EggNOG free text desc.sulfuric ester hydrolase activity
EggNOG OGsCOG3119@1,KOG3867@2759
EC3.4.14.10
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.579242-CDS-H-elongata_contig121731:1409..15921622929716.579242-CDS-H-elongata_contig121731:1409..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121731 1410..1592 +
1691679130.209776-CDS-H-elongata_contig121731:1409..15921691679130.209776-CDS-H-elongata_contig121731:1409..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121731 1410..1592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121731.1662.1prot_H-elongata_contig121731.1662.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121731 1410..1592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121731.1662.1

>prot_H-elongata_contig121731.1662.1 ID=prot_H-elongata_contig121731.1662.1|Name=mRNA_H-elongata_contig121731.1662.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
GEGSDSGSDVQRGTKPNVFFFLIDDMGHADIGYQSTDLREITPNLDALAA
GGIKVGWEFVA
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mRNA from alignment at H-elongata_contig121731:1410..1592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121731.1662.1 ID=mRNA_H-elongata_contig121731.1662.1|Name=mRNA_H-elongata_contig121731.1662.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig121731:1410..1592+ (Himanthalia elongata Himel1 dioecious)
GGCGAAGGCAGCGACAGCGGCAGCGACGTTCAGCGCGGGACCAAGCCCAA
CGTATTTTTCTTCTTGATCGACGACATGGGCCACGCCGACATCGGCTACC
AGTCCACCGACCTGCGAGAGATTACCCCCAACCTCGACGCGTTGGCGGCT
GGCGGTATCAAGGTGGGGTGGGAGTTTGTTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig121731:1410..1592+

>mRNA_H-elongata_contig121731.1662.1 ID=mRNA_H-elongata_contig121731.1662.1|Name=mRNA_H-elongata_contig121731.1662.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig121731:1410..1592+ (Himanthalia elongata Himel1 dioecious)
GGCGAAGGCAGCGACAGCGGCAGCGACGTTCAGCGCGGGACCAAGCCCAA
CGTATTTTTCTTCTTGATCGACGACATGGGCCACGCCGACATCGGCTACC
AGTCCACCGACCTGCGAGAGATTACCCCCAACCTCGACGCGTTGGCGGCT
GGCGGTATCAAGGTGGGGTGGGAGTTTGTTGCGGGCGAAGGCAGCGACAG
CGGCAGCGACGTTCAGCGCGGGACCAAGCCCAACGTATTTTTCTTCTTGA
TCGACGACATGGGCCACGCCGACATCGGCTACCAGTCCACCGACCTGCGA
GAGATTACCCCCAACCTCGACGCGTTGGCGGCTGGCGGTATCAAGGTGGG
GTGGGAGTTTGTTGCG
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