mRNA_H-elongata_contig121661.1654.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: D8LGB5_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB5_ECTSI) HSP 1 Score: 230 bits (587), Expect = 5.030e-74 Identity = 119/150 (79.33%), Postives = 132/150 (88.00%), Query Frame = 1
Query: 31 RRRERVRSGSVSS---SVGFG-GPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPAFVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTPSQVCVV 468
+RR+RVRSGS+ S GFG G +PQRE+ELSVA NLTLEEI+GNVFRMSKDQIGCRLLQLKLDQGDP FV KIC EA+PYL+EMMKDPFGNYLFQKIADKVDE GR +LV +VA +MV+AGMNLHGTRSVQK+IEVCRGTPSQV VV
Sbjct: 24 KRRDRVRSGSIVSMAGGAGFGSGGEPQRETELSVAMENLTLEEIEGNVFRMSKDQIGCRLLQLKLDQGDPMFVSKICGEAQPYLSEMMKDPFGNYLFQKIADKVDEDGRTDLVNQVAGQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVV 173
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A6H5K3P5_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3P5_9PHAE) HSP 1 Score: 214 bits (544), Expect = 2.040e-64 Identity = 114/145 (78.62%), Postives = 124/145 (85.52%), Query Frame = 1
Query: 46 VRSGSVSS---SVGFG-GPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPAFVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTPSQVCVV 468
VRSGS+ S GFG G DPQRE+ELSVA NLTLEEIDGNVFRMSKDQ+ LLQLKLDQGDP FV KIC EA+PYL+EMMKDPFGNYLFQKIADKVDE GR +LV +VA +MV+AGMNLHGTRSVQK+IEVCRGTPSQV VV
Sbjct: 131 VRSGSIVSMGGGAGFGSGGDPQRETELSVAMENLTLEEIDGNVFRMSKDQVSV-LLQLKLDQGDPVFVSKICGEAQPYLSEMMKDPFGNYLFQKIADKVDEDGRTDLVNQVAGQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVV 274
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A1V9YPP5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPP5_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.240e-27 Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 121 ATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLD-QGDPAFVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVC 438
A L +E++ G V+ MSKDQ GCRLLQ +LD G P D I EA P+L +MM DPFGNYLFQK+ ++V + R E+VK+V+ +V A +NLHGTRSVQKV+EVC
Sbjct: 249 ANVTLAVEDLQGRVYAMSKDQNGCRLLQEQLDCVGRPDLCDVIYTEALPHLVDMMVDPFGNYLFQKLLERVADDQRLEIVKRVSPHLVAAALNLHGTRSVQKVVEVC 355
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A6A3WBV6_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WBV6_9STRA) HSP 1 Score: 115 bits (288), Expect = 7.860e-27 Identity = 75/163 (46.01%), Postives = 99/163 (60.74%), Query Frame = 1
Query: 7 GFHDKVAAR---RRERVRSGSVSSSVGFGG-----------PDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 450
GF + +R R E SGS+S + GG DP S LS A L++E+I VF MSKDQ GCRLLQ +LD D A + I E+ +LAEMM DPFGNYLFQK+ ++V+E R ++++V+ +V A +NLHGTRSVQKV+EVC +P
Sbjct: 540 GFGGRQQSRMGYRSENSSSGSMSLGLMNGGGMSAPMMGGAATDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 696
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: V9FR80_PHYPR (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=V9FR80_PHYPR) HSP 1 Score: 115 bits (287), Expect = 1.070e-26 Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 1
Query: 46 VRSGSVSSSV-GFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 450
+ GS+S+ + G DP S LS A L++E+I VF MSKDQ GCRLLQ +LD D A + I E+ +LAEMM DPFGNYLFQK+ ++V+E R ++++V+ +V A +NLHGTRSVQKV+EVC +P
Sbjct: 524 MNGGSMSAPMMGGSANDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 654
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A0W8D4Y9_PHYNI (Uncharacterized protein n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D4Y9_PHYNI) HSP 1 Score: 115 bits (287), Expect = 1.070e-26 Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 1
Query: 46 VRSGSVSSSV-GFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 450
+ GS+S+ + G DP S LS A L++E+I VF MSKDQ GCRLLQ +LD D A + I E+ +LAEMM DPFGNYLFQK+ ++V+E R ++++V+ +V A +NLHGTRSVQKV+EVC +P
Sbjct: 480 MNGGSMSAPMMGGSANDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 610
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A7S2PAP6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PAP6_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.890e-26 Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 1
Query: 16 DKVAARRRERVRSGSVSSSVGFGGPDPQRE---------SELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPAFVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEV 435
D+ + R R G++S + DP + + L +T L E+ G+V R+S+DQ+GCRLLQ LD+ P I E P+LAE M DPFGNYLFQKI +KV++ R L+ V+ +V+A +NLHGTRSVQKV+EV
Sbjct: 313 DRRNPKGRSRDMVGNISEHDSYAVDDPGYDLSNPPSEAITALYQSTRRPALSELLGHVRRLSRDQVGCRLLQQSLDEDGPDAATAILQEGLPFLAEAMTDPFGNYLFQKILEKVNDEERLRLISTVSPRLVNAALNLHGTRSVQKVVEV 461
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: A0A662WKH4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKH4_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.900e-26 Identity = 66/136 (48.53%), Postives = 87/136 (63.97%), Query Frame = 1
Query: 46 VRSGSVSSSVGFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 450
+ SG S G S LS A L++E+I VF MSKDQ GCRLLQ +LD D A + I E+ +LAEMM DPFGNYLFQK+ ++V+E R ++++V+ +V A +NLHGTRSVQKV+EVC +P
Sbjct: 277 MNSGGGGMSAPMMGGATADASSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 409
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: G4ZK69_PHYSP (PUM-HD domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZK69_PHYSP) HSP 1 Score: 114 bits (285), Expect = 1.960e-26 Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 1
Query: 73 VGFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVCRGTP 450
+G DP S LS A L++E+I VF MSKDQ GCRLLQ +LD D A + I E+ +LAEMM DPFGNYLFQK+ ++V+E R ++++V+ +V A +NLHGTRSVQKV+EVC +P
Sbjct: 433 MGGAANDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSP 553
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Match: H3GN50_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GN50_PHYRM) HSP 1 Score: 114 bits (285), Expect = 1.980e-26 Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 1
Query: 46 VRSGSVSSSV-GFGGPDPQRESELSVATNNLTLEEIDGNVFRMSKDQIGCRLLQLKLDQGDPA-FVDKICVEAKPYLAEMMKDPFGNYLFQKIADKVDEAGRAELVKKVADEMVDAGMNLHGTRSVQKVIEVC 438
+ GS+SS + G DP S LS A L++E+I VF MSKDQ GCRLLQ +LD D A + I E+ +LAEMM DPFGNYLFQK+ ++V+E R ++++V+ +V A +NLHGTRSVQKV+EVC
Sbjct: 495 MNGGSMSSPMMGGSANDP---SSLSAA---LSVEDIQNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVC 621 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121661.1654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig121661.1654.1 >prot_H-elongata_contig121661.1654.1 ID=prot_H-elongata_contig121661.1654.1|Name=mRNA_H-elongata_contig121661.1654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp MFGFHDKVAARRRERVRSGSVSSSVGFGGPDPQRESELSVATNNLTLEEIback to top mRNA from alignment at H-elongata_contig121661:310..1659- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig121661.1654.1 ID=mRNA_H-elongata_contig121661.1654.1|Name=mRNA_H-elongata_contig121661.1654.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-elongata_contig121661:310..1659- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig121661:310..1659- >mRNA_H-elongata_contig121661.1654.1 ID=mRNA_H-elongata_contig121661.1654.1|Name=mRNA_H-elongata_contig121661.1654.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig121661:310..1659- (Himanthalia elongata Himel1 dioecious)back to top |