mRNA_H-elongata_contig12154.1650.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12154.1650.1
Unique NamemRNA_H-elongata_contig12154.1650.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: D8LLD6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD6_ECTSI)

HSP 1 Score: 547 bits (1409), Expect = 4.090e-170
Identity = 322/622 (51.77%), Postives = 398/622 (63.99%), Query Frame = 1 
Query:    1 RYMENGCHIGAPRYRNTNNVFLFRHLLPSLEELGITRETCLPKNKLVVEETELRAATAALSSSREVSGTVAMDFSRLVKTSLRAINFDHQARSPYCGTCACQQRLARALARIDSRVQEQIKNASTSLKII---ETRGGDVRGGPESKRRI--------EKNRDLAILEALDSAKLTFQADVHTDEYERVILCEDHDAPPLCKIWVARACTQNRIHCRYRHYFISYPERDRIAAWKEGRDAKAELDVLTCIAKREILLAEAEAEASACNRRYLSEATTTVTERDVDSLLKILDQLRLASVRVVEAICLWRKDIKVAETKSQLTQANRCDPTRFMPPKKVFSFKHPNGAPRGKGEVEDRLSSSVSPATVTSGLGGLSNATGHIAEATAAAHGGDTEDEDRKGKGSSKLTLDSIKRHPVGRAKVQGMSAERENLAEGYVARGRWVVTIMVPGRKLWESSPAVLSKHKRFRRSRQGTKIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCMPKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEALSGGIRLCRPYIWNNSNYLLKMANDLNFLADVAPLAGWLEHD----FNLEDNPFLLAPTEVNDGTEVNKVNGVNR 1821
            RYME G + GAPRYRN NN+FLFRH L   EELGITR+TCLP+++L+ EE E  A TAALS  REVSG + MDFSRL K     +  +HQ             R+ARA+A++D++ QEQ+  AS +L  +   E  GGD   G  +  R+        EK+RDLA++ A D  KLTFQ   +T + +RVI CE+H   PLCK WVARAC +++IHCR RHYFIS  E+DR+ AW+EG  AK EL+VL CIAKRE LL+ AE E  AC+R +LSE+ T V E DV SLL++LDQLRLASVRVVEA+CLWR+D +    KS L+              K+       G P G  E E+   SS++ +    G G     +G  +        GD    D    G++ L +   K  PV      G  +ER     G  A+GRWV T+MVPGRKLW+SSPA++S++KRFRRSRQ  KIAR+Q+YLGVF TKNEA + YDDAL REAVKQRSSVL MPKKRIV R CGKH+A+QSDDTP GRPCEQCA EAL+GG++   PYIWNNSNYLLKM  DL FLA V PL  WL       F+L+ NPFLLA    +D  E+  V G+ R
Sbjct:  152 RYMERGVYGGAPRYRNPNNIFLFRHTLRRSEELGITRQTCLPESELLGEEVESAATTAALSLGREVSGKIGMDFSRLEK-----VRRNHQ-------------RIARAVAKVDAQFQEQMSVASATLNGVDRAEKSGGDAGSGAGAGDRVTSAVGGGAEKSRDLAVMAASDGPKLTFQD--NTSDGDRVIPCEEHGVAPLCKRWVARACPKSQIHCRCRHYFISIAEKDRMVAWREGNCAKTELEVLACIAKREGLLSTAEREGVACSRNFLSESRTNVEESDVISLLRLLDQLRLASVRVVEAVCLWREDTQAQRVKSALSSNGNISSEPRTQDGKIPKVNAGKGEPSGALEAEEPTPSSLASSDRRQGGGNNGEYSGVESRCPMDDQCGDL---DENSSGNTDLRIKPPKA-PV----ALGSHSERGGGGGGQSAKGRWVATMMVPGRKLWDSSPAMMSQYKRFRRSRQDPKIARDQLYLGVFETKNEAMEAYDDALCREAVKQRSSVLRMPKKRIVTRTCGKHMAIQSDDTPSGRPCEQCAAEALNGGVKHSPPYIWNNSNYLLKMTWDLEFLASVDPLVSWLGAGGGKAFDLKGNPFLLATAGHDDEEEI--VEGLGR 743
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: A0A6H5JP29_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP29_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 2.100e-71
Identity = 169/334 (50.60%), Postives = 204/334 (61.08%), Query Frame = 1 
Query:  844 QLRLASVRVVEAICLWRKDIKVAETKSQL-TQANRCDPTRFMPPKKVFSFKHPNGAPRGK-GEVEDRLSSSVSPATVTSGLGGLSNATGHIAEATAAAHGGDTEDEDRKGKGSSKLTLDSIKRHPVGRAKVQGMSAERENLAEGYV--ARGRWVVTIMVPGRKLWESSPAVLSKHKRFRRSRQGTKIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCMPKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEALSGGIRLCRPYIWNNSNYLLKMANDLNFLADVAPLAGWLE----HDFNLEDNPFLLAPTEVNDGTEVNKVNGVNR 1821
            QLRLASV+VVEAICLWR+D +  + KS L +  N     R    KK       N   RG+ G +E R  +  S A+     G  +N      E+        T+D D     +S    D  K  P       G  ++R           +GRWV T+MVPGRKLW+SSPA++S++KRFRRSRQ  KIAR+Q+YLGVF TKNEA + YDDAL REAVKQRSSVL MPKKRIV R CGKH+A+QSDDTP GRPCEQCA EAL+GG++   PYIWNNSNYLLKM  DL FLA V PL  WL       F+L+ NPFLLA    +D  E+  V G+ R
Sbjct:   18 QLRLASVKVVEAICLWREDTQAQKVKSALASNGNISSAPRTQDGKKT----EVNAGKRGRSGALEARDPTPSSLASSDRRQGDENNRDNSGVESRCP-----TDDLDEN---NSVNAEDRTK--PRNAPVALGSHSKRGXXXXXXXRCVKGRWVATMMVPGRKLWDSSPAMMSQYKRFRRSRQDPKIARDQLYLGVFETKNEAIEAYDDALCREAVKQRSSVLRMPKKRIVTRTCGKHMAIQSDDTPLGRPCEQCAAEALNGGVKHSPPYIWNNSNYLLKMTWDLEFLARVDPLVSWLGAGGGRAFDLKGNPFLLATAGHDDEEEI--VEGLER 335
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: A0A6H5JPN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN4_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.460e-27
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 RYMENGCHIGAPRYRNTNNVFLFRHLLPSLEELGITRETCLPKNKLVVEETELRAATAALSSSREVSGTVAMDFSRLVKTSLRAINFDHQA 273
            +YME G + GAPRYRN NN+FLFRH L   EELGITR+TCLP+++L+ EE E  A TAALS  REVSG + MDFSRLVKTSL++IN D QA
Sbjct:  162 KYMERGVYGGAPRYRNPNNIFLFRHTLRRSEELGITRQTCLPESELLGEEVESAATTAALSLGREVSGEIGMDFSRLVKTSLQSINIDRQA 252
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: A0A2R5GHG0_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHG0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.820e-26
Identity = 104/369 (28.18%), Postives = 148/369 (40.11%), Query Frame = 1 
Query:  682 DAKAELDVLTCIAKREILLAEAEAEASACNRRYLSEATTTVTERDVDSLLKILDQLRLASVRVVEAICLWRKDIKVAETKSQLTQANRCDPTRFMPPKKVFSFKHPNGAPRGKGEVEDRLSSSVSPATVTSGLGGLSNATGHIAEATAAAHGGDTEDEDRKGKGSSKLTLDSIKRHPVGRAKVQGMSAERENLAEGYVARGRWVVTIMVPGRKLWESSPAVLSKHKRFRRSRQ--GTKIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCMPKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEALSGGIRLCRPYIWNNSNYLLKMANDLNFLADVAPLAGWLEHDF-----NLEDNPFLLA 1767
            DA  E+ VL  IA RE L+A A +EA AC+R++ S  +  V   DV SLL +L++LR+ASVRVVEA+  WR+                                                                               GG+T                          ++       E  AE ++    WVV I   G +L+  S A  SK KRF R     G K  R + Y+G++ T+ +A + Y+D + R   K+       PK + + R CGKH AV+S+   P   CE C   + +   +    Y+WN  NYLLKM +D NFL D+  L  + + +F     +   NPFLLA
Sbjct:  399 DAGLEMGVLDAIASREQLIASARSEAEACSRKFQSHLSGFVQTEDVGSLLYLLNRLRVASVRVVEALVKWRR-------------------------------------------------------------------------------GGET--------------------------RLSAAEGAAETFAESFLKPRGWVVKIGFMGEQLYPGSKAFRSKVKRFSRDEDVNGKKALRFR-YVGIYETREQALRAYEDEIKRLMAKEMCGPENFPKPKTIIRACGKHFAVESEMGVPNTRCEICFANSFNHFGKYSPSYMWNGQNYLLKMLHDTNFLEDIELLRLFFKEEFATGKLSFRGNPFLLA 661
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: A0A225WEZ0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WEZ0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.440e-16
Identity = 67/195 (34.36%), Postives = 104/195 (53.33%), Query Frame = 1 
Query: 1240 SAERENLAEGYVARGRWVVTIMVP-GRKLWESSPAVLSKHKRFRRSRQ-GTKIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCMPKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEALS---GGIRLCRPYIWNNS-NYLLKMANDLNFLADVAPLAGWLEHD-------FNLEDNPFLLAPTEVND 1785
            +A  E+ +E     G W V+I +  G++L++ S A  SK +RFRRS     K   + +YLG ++T++EA   YD+    EA +  +++  +P++R V R CGKH AV+S+   P   C +C  + L+   G      P+ +    NY++KM NDL+FL D+ PL   L H        F +  N FLL  T + D
Sbjct:  631 NATNESSSEPQTLLG-WSVSITLDTGKQLYKGSKAFASKVRRFRRSEDINGKREHHIVYLGYYKTQDEAECAYDEHAVSEARRLNTTIEHLPRRRSVFRSCGKHFAVESERDGPSF-CIECKTKKLALSTGTDEWMPPFFYGTGVNYIMKMENDLDFLDDILPLKATLNHGRGVDSETFPMRGNVFLLPKTPIQD 823
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: G4YNU9_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YNU9_PHYSP)

HSP 1 Score: 92.8 bits (229), Expect = 9.530e-16
Identity = 64/173 (36.99%), Postives = 94/173 (54.34%), Query Frame = 1 
Query: 1312 GRKLWESSPAVLSKHKRFRRSRQGT-KIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCMPKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEALSG-----GIRLCRPYIWNNS-NYLLKMANDLNFLADVAPLAGWL--------EHDFNLEDNPFLLAPTEVND 1785
            G++L++ S A +SK KRFRRS   T K  ++ +YLG F T+ EA + YD+    EA +  ++V  +P++R V R CGKH AV+S+   P   C +C  + L+            P+ +    NY++KMANDL+FL +V PL   L        +  F L  N FLL  T + D
Sbjct:  685 GKQLYKGSKAFVSKVKRFRRSEDVTGKKEQHIVYLGYFETQEEAERAYDEHAASEARRLNTTVEHLPRRRNVFRSCGKHFAVESEKDGPSF-CIECKTKRLASISSTLADEWVPPFFYGTGVNYIMKMANDLDFLDEVLPLKAALNIGRGVHEDEAFPLRGNLFLLPRTPIQD 856
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: W2Q0X1_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2Q0X1_PHYPN)

HSP 1 Score: 92.0 bits (227), Expect = 1.640e-15
Identity = 68/194 (35.05%), Postives = 102/194 (52.58%), Query Frame = 1 
Query: 1246 ERENLAEGYVARGRWVVTIMVP-GRKLWESSPAVLSKHKRFRRSRQGT-KIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCMPKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEAL----SGGIRLCRPYIWNNS-NYLLKMANDLNFLADVAPLAGWL-------EHDFNLEDNPFLLAPTEVND 1785
            +R NL+        W  +I +  G++L++ S A +SK KRFRRS+  T K  ++ +YLG ++T+ EA + YD     EA +  ++V  +P +R V R CGKH AV+S+ + P   C +C    L    S       P+ +    NY++KMANDL+FL +  PL   L       E  F +  N FLL  T + D
Sbjct:  634 KRSNLSSEEAPLLGWSASITLDTGKQLYKGSSAFVSKVKRFRRSQDITGKREQHIVYLGYYQTQEEAERAYDQHAAAEARRLNTTVEHLPPRRNVFRSCGKHFAVESEKSGPSF-CIECKTNQLASLSSAAEDWVPPFFYGTGVNYIMKMANDLDFLDENLPLKATLNSGRGVDEDAFPMRGNVFLLPKTPIQD 826
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: A0A329T294_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T294_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.760e-15
Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = 1 
Query: 1288 WVVTIMVP-GRKLWESSPAVLSKHKRFRRSRQGT-KIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCMPKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEAL----SGGIRLCRPYIWNNS-NYLLKMANDLNFLADVAPLAGWL-------EHDFNLEDNPFLLAPTEVND 1785
            W  +I +  G++L++ S A +SK KRFRRS   T K  ++ +YLG + T+ EA + YD+    EA +  ++V  +P +R V R CGKH AV+S+   P   C +C  + L    S       P+ +    NY++KMANDL+FL DV PL   L       +  F +  N FLL  T + D
Sbjct:  666 WSASITLDTGKQLFKGSQAFVSKVKRFRRSEDITGKREQHIVYLGYYATQEEAERAYDEHAASEARRLNTTVEHLPHRRNVFRSCGKHFAVESEKDGPSF-CIECKTKQLASLSSAADDWIPPFFYGTGVNYIMKMANDLDFLDDVLPLKTALNSGRGVDDEAFPMRGNVFLLPKTPIQD 844
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: D0MWL8_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MWL8_PHYIT)

HSP 1 Score: 91.3 bits (225), Expect = 2.890e-15
Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = 1 
Query: 1288 WVVTIMVP-GRKLWESSPAVLSKHKRFRRSRQGT-KIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCMPKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEAL----SGGIRLCRPYIWNNS-NYLLKMANDLNFLADVAPLA-------GWLEHDFNLEDNPFLLAPTEVND 1785
            W  +I +  G++L++ + A +SK KRFRRS   T K  ++ +YLG F T+ EA + YD+    EA +  ++V  +P +R V R CGKH AV+S+   P   C +C  + L    S       P+ +    NY++KMANDL+FL +V PL        G  +  F +  N FLL  T + D
Sbjct:  664 WSASITLDTGKQLYKGTSAFVSKVKRFRRSEDITGKREQHIVYLGYFETQEEAERAYDEHAASEARRLNTTVEHLPHRRNVFRSCGKHFAVESEKNGPSF-CIECKTKQLASLSSAADDWIPPFFYGTGVNYIMKMANDLDFLDEVLPLKTALNSGRGGDDDAFPMHGNVFLLPKTPIQD 842
[Close]
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Match: A0A833SM41_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SM41_PHYIN)

HSP 1 Score: 91.3 bits (225), Expect = 3.080e-15
Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = 1 
Query: 1288 WVVTIMVP-GRKLWESSPAVLSKHKRFRRSRQGT-KIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCMPKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEAL----SGGIRLCRPYIWNNS-NYLLKMANDLNFLADVAPLA-------GWLEHDFNLEDNPFLLAPTEVND 1785
            W  +I +  G++L++ + A +SK KRFRRS   T K  ++ +YLG F T+ EA + YD+    EA +  ++V  +P +R V R CGKH AV+S+   P   C +C  + L    S       P+ +    NY++KMANDL+FL +V PL        G  +  F +  N FLL  T + D
Sbjct:  664 WSASITLDTGKQLYKGTSAFVSKVKRFRRSEDITGKREQHIVYLGYFETQEEAERAYDEHAASEARRLNTTVEHLPHRRNVFRSCGKHFAVESEKNGPSF-CIECKTKQLASLSSAADDWIPPFFYGTGVNYIMKMANDLDFLDEVLPLKTALNSGRGGDDDAFPMHGNVFLLPKTPIQD 842
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12154.1650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LLD6_ECTSI4.090e-17051.77AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JP29_9PHAE2.100e-7150.60AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JPN4_9PHAE1.460e-2767.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5GHG0_9STRA1.820e-2628.18Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A225WEZ0_9STRA4.440e-1634.36Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
G4YNU9_PHYSP9.530e-1636.99Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
W2Q0X1_PHYPN1.640e-1535.05Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A329T294_9STRA1.760e-1536.67Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
D0MWL8_PHYIT2.890e-1536.11Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A833SM41_PHYIN3.080e-1536.11Uncharacterized protein n=1 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12154contigH-elongata_contig12154:347..4658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score546.6
Seed ortholog evalue1.5e-152
Seed eggNOG ortholog2880.D8LLD6
EggNOG OGs2BWSQ@1,2QVEV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-27_002240.1
Exons8
Model size1821
Cds size1815
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929715.3103907-CDS-H-elongata_contig12154:346..6501622929715.3103907-CDS-H-elongata_contig12154:346..650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 347..650 -
1691679129.7332888-CDS-H-elongata_contig12154:346..6501691679129.7332888-CDS-H-elongata_contig12154:346..650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 347..650 -
1622929715.3395743-CDS-H-elongata_contig12154:973..10861622929715.3395743-CDS-H-elongata_contig12154:973..1086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 974..1086 -
1691679129.7434292-CDS-H-elongata_contig12154:973..10861691679129.7434292-CDS-H-elongata_contig12154:973..1086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 974..1086 -
1622929715.3600473-CDS-H-elongata_contig12154:1552..21101622929715.3600473-CDS-H-elongata_contig12154:1552..2110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 1553..2110 -
1691679129.760692-CDS-H-elongata_contig12154:1552..21101691679129.760692-CDS-H-elongata_contig12154:1552..2110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 1553..2110 -
1622929715.380718-CDS-H-elongata_contig12154:2328..24641622929715.380718-CDS-H-elongata_contig12154:2328..2464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 2329..2464 -
1691679129.7695274-CDS-H-elongata_contig12154:2328..24641691679129.7695274-CDS-H-elongata_contig12154:2328..2464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 2329..2464 -
1622929715.3989422-CDS-H-elongata_contig12154:2744..28371622929715.3989422-CDS-H-elongata_contig12154:2744..2837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 2745..2837 -
1691679129.7782426-CDS-H-elongata_contig12154:2744..28371691679129.7782426-CDS-H-elongata_contig12154:2744..2837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 2745..2837 -
1622929715.4159749-CDS-H-elongata_contig12154:3149..32771622929715.4159749-CDS-H-elongata_contig12154:3149..3277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 3150..3277 -
1691679129.7914486-CDS-H-elongata_contig12154:3149..32771691679129.7914486-CDS-H-elongata_contig12154:3149..3277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 3150..3277 -
1622929715.4308586-CDS-H-elongata_contig12154:3765..39521622929715.4308586-CDS-H-elongata_contig12154:3765..3952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 3766..3952 -
1691679129.801727-CDS-H-elongata_contig12154:3765..39521691679129.801727-CDS-H-elongata_contig12154:3765..3952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 3766..3952 -
1622929715.4484034-CDS-H-elongata_contig12154:4356..46521622929715.4484034-CDS-H-elongata_contig12154:4356..4652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 4357..4652 -
1691679129.8101003-CDS-H-elongata_contig12154:4356..46521691679129.8101003-CDS-H-elongata_contig12154:4356..4652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12154 4357..4652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929715.4768124-UTR-H-elongata_contig12154:4652..46581622929715.4768124-UTR-H-elongata_contig12154:4652..4658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12154 4653..4658 -
1691679129.8195786-UTR-H-elongata_contig12154:4652..46581691679129.8195786-UTR-H-elongata_contig12154:4652..4658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12154 4653..4658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12154.1650.1prot_H-elongata_contig12154.1650.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12154 347..4652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12154.1650.1

>prot_H-elongata_contig12154.1650.1 ID=prot_H-elongata_contig12154.1650.1|Name=mRNA_H-elongata_contig12154.1650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=605bp
MENGCHIGAPRYRNTNNVFLFRHLLPSLEELGITRETCLPKNKLVVEETE
LRAATAALSSSREVSGTVAMDFSRLVKTSLRAINFDHQARSPYCGTCACQ
QRLARALARIDSRVQEQIKNASTSLKIIETRGGDVRGGPESKRRIEKNRD
LAILEALDSAKLTFQADVHTDEYERVILCEDHDAPPLCKIWVARACTQNR
IHCRYRHYFISYPERDRIAAWKEGRDAKAELDVLTCIAKREILLAEAEAE
ASACNRRYLSEATTTVTERDVDSLLKILDQLRLASVRVVEAICLWRKDIK
VAETKSQLTQANRCDPTRFMPPKKVFSFKHPNGAPRGKGEVEDRLSSSVS
PATVTSGLGGLSNATGHIAEATAAAHGGDTEDEDRKGKGSSKLTLDSIKR
HPVGRAKVQGMSAERENLAEGYVARGRWVVTIMVPGRKLWESSPAVLSKH
KRFRRSRQGTKIARNQIYLGVFRTKNEAFKVYDDALHREAVKQRSSVLCM
PKKRIVPRPCGKHIAVQSDDTPPGRPCEQCAGEALSGGIRLCRPYIWNNS
NYLLKMANDLNFLADVAPLAGWLEHDFNLEDNPFLLAPTEVNDGTEVNKV
NGVNR
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mRNA from alignment at H-elongata_contig12154:347..4658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12154.1650.1 ID=mRNA_H-elongata_contig12154.1650.1|Name=mRNA_H-elongata_contig12154.1650.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4312bp|location=Sequence derived from alignment at H-elongata_contig12154:347..4658- (Himanthalia elongata Himel1 dioecious)
AGGTACATGGAAAATGGTTGCCACATAGGCGCCCCAAGGTATCGCAACAC
CAATAACGTTTTCCTTTTCAGGCATCTCCTGCCCTCCTTGGAGGAGCTCG
GTATTACTCGAGAGACCTGTCTGCCGAAAAATAAGCTCGTCGTCGAGGAG
ACCGAGTTGCGGGCAGCGACAGCGGCGCTGTCGTCGAGTCGTGAAGTCTC
CGGGACGGTAGCAATGGATTTTTCGCGTTTGGTGAAGACTAGCTTACGGG
CTATCAACTTCGATCACCAGGCGAGAAGCCCTTACTGCGGAACCTGCGCC
TGGTATCAGCTCACATTCTATTTTTCTATCATTTCGTATCTCACCTTTTT
GGCCTTAAGCGCCACCTGAGCCCGCCCGTGAGTAGCGCCACTCTTTCGGC
TAAGTACTAAGCTGCAGCTTGTCCGTGCGCCTTCAAATCGAGGAGCTAAG
GTATACTTTGGCGCTGTATAGAGCCTCTGAAATTCAAACCGGTGCACCGC
TTACAGAGGTATGTGGATTCTGAAGTCCTGTAGAGCATGAACAATTCGAA
CCTTCCTTTTTTGCACGAACACCGTAGCACCACACATGTTCGAGTTCGTC
CATCATTGTTGTACCAATGATACCCACCTAATGCTTTGTCGTTCCTTCTG
CCACGATAAGTCTTCGTTTCATCCGTGTCGATGTTTCAGGATAGGGTGCA
TTTGAGTCAACAACGTTTAGCGCGTGCCTTGGCCAGAATAGACTCAAGGG
TCCAAGAGCAAATTAAGAATGCATCGACCTCATTGAAAATCATTGAAACG
AGAGGGGGTGATGTGAGAGGTGGTCCGGAATCAAAAAGAAGAATCGAAAA
GAACCGAGATCTTGCTATCTTGGAGGCATTGGATAGCGCAAAGGTGTGAA
AGTGTTTGGCCTACCTCGCCCAATCATGCAGATCAGAGTTACACGTAGAG
ATTGGGTCGATCAAAGCCAACGCGTAATGGTAACGTCGCGGAAGCTTTGG
CGAACGTAGAGGTGACTTCTTCCTTGCCTAACGTCCGTGAGTGCGGCGAT
GAGGGGTTGCCGATACGCCGACTTTTGTTTTTCGTCCACACAAGTGCCGC
ATGTACCATCGCATCTGTAATAAAAATGAGATACTCTCTCGTATACTTCA
GTGTGCTGGACGTTGGACGCCTTAGCTAAGACACGGGGGAAATGTGACCA
TGGATCAATTCGATGCGAATTGACAAATTAGTAAGAGCAGGGTATAATAT
TCCTCCATGACTCCACCACTTCAGAAATTGACCTAATAGATACAACCCTA
TCAATGCTTGAACCACTTCATTTCGCACATTTTCTACCTGCGCGCCGTCC
CACACTATGCCTTGGCGGGCGTTACCTTCAGCTCACATTCCAGGCCGATG
TCCACACTGATGAATATGAAAGGGTCATTCTATGCGAAGACCATGACGCT
CCTCCCCTATGCAAGATATGGGTTGCGCGTGCATGCACCCAAAACCGGAT
ACATTGCCGGTACGACAAAAGGCGCTGACGGGGACCCCACCTCTTTCCTA
AAGACGACTCTCTCCTGAAGGCACATCGCATGCGATCTCATTTGTTTGCC
ATATCATTACTTACTCGGGACCAGAGCGGCCTCGATAAATCGCGCTTTGG
CGGGAAGCTGTGGAGGTCTCTCGGGCTATATGTCCGGCTACTCAATGAAA
ATGTACAGCACGCTTCTAGACCCAAAACGCCTGACAAGATAATGCACAAA
CGACCTTGCCTCTACATGCTGCCCGTCTGACAATGGCGACTGTGCACTGC
TAATATGCCTTGCGGAGGAAGGTATCGACATTACTTCATCAGTTATCCCG
AGCGCGATCGCATTGCAGCTTGGAAGGAAGGGAGAGATGCCAAAGCAGAA
CTGGACGTTCTTACGTAAGTACTGATAGCGAAGCTTCGAGTGTCCTCGCC
GATACATAGTTTCTACGTTCGCGAGGAAGGTGGTTGTGCGATTCTGGTGA
CTTGTGTCCTTAGACTTGTAGGACTGAGTAACTCTCGAAAACACACGTCT
AATAACGTTTTTCGATGGTTCGTTGCATTGCTCCACATACTTTAGTTAGC
GAATAAATACATTCCGGGAGCGAATAGACAGGTGGCATAAAGGACGATGC
TGTTGCTTTGTCAATCTCATAATTGCGCGGAACTTTCAACACAGTTGCAT
AGCCAAGCGGGAAATACTATTGGCAGAGGCGGAAGCTGAGGCCTCTGCTT
GTAACAGGCGATACTTGTCAGAGGCAACGACGACGGTTACGGAGCGAGAC
GTGGATTCCCTGCTGAAAATACTCGATCAAGTGAGGAGTCGGCGAAAGCG
CTTAAGTCAGCGCACCTGCCGGTAAAACGGTAGCACCCACTGCCCTAAAC
CACGATCGGCGATAAGGAAGGTGCCGCAACCTGTAGACGTTACTTATATG
AATTTCTCGTCAAGGAGTCTTCGTACAGAATCAATAGGGAGAAGGCTGAC
ATCAGCGTGGATCTGAGGTATGCTGTATTCGTTGTCTTCTGCCAACAGCT
CCGCCTGGCGTCAGTGCGAGTGGTCGAAGCGATCTGTCTCTGGCGAAAGG
ACATTAAAGTCGCGGAGACGAAGTCCCAACTAACGCAGGCAAACCGATGT
GATCCGACAAGATTCATGCCTCCCAAGAAAGTATTTTCTTTTAAACATCC
GAACGGTGCCCCAAGAGGTAAGGGAGAAGTCGAAGACAGGCTATCAAGTT
CAGTATCACCAGCAACAGTGACATCGGGGCTAGGCGGTTTAAGCAACGCC
ACTGGACATATAGCAGAAGCAACAGCAGCAGCACACGGGGGTGATACTGA
AGATGAAGACCGCAAAGGAAAGGGGAGCTCAAAGTTGACGCTGGATAGTA
TCAAGCGTCATCCGGTGGGTCGTGCGAAGGTACAAGGAATGTCCGCGGAG
CGGGAGAATCTTGCTGAAGGTTATGTGGCGAGGGGGAGGTGGGTCGTGAC
GATCATGGTCCCGGGGAGAAAGCTCTGGGAATCGTCTCCGGCAGTATTGT
CAAAGCACAAGAGATTTCGAAGGAGCAGGCAAGGCACCAAGATAGCGAGA
AATCAGGTGTGGTTTACTCGCGATGCGCTTTTCGGTTTTAGGTTTTAAAA
TGTATTTTGACCGTTGAGACTTGTTGCTCGTGTCAGGCCGTCCACGTTGT
AAGACTAGCTTTCGAGATCGACAGGTCATATCAACCAAGAGCAGTAGAGA
AGTCAACGCTTTGGATATGGATACATCGATATTTTATCTAGATGCCGTAT
GCGATTCAGCATGGGTGGGGAGAATGAACAGACTGATGCGTGACGGAACG
GCCGAACCCGTCTCGCGGGGCCAAATTCTCGAGCGCGAATGGGAACAGGG
AAAACCCATTTTCCCGGTTTAGCTGACCGCAAGCAGGATTGACAAGTATG
TGATAACCACATACATGCAGAGAGAGAGAGAGTGAGTAATGCATGCACGA
TGTGAACATAGCATGGTGGTGGAGAAATAAATACGTGTTATTACTTCGAT
ACGCTTTCCTTCTAATAAACAGATTTACCTTGGAGTGTTCAGGACAAAGA
ACGAAGCATTTAAAGTTTACGACGACGCACTTCATCGGGAGGCGGTGAAG
CAAAGGTCGTCTGTGCTATGTATGCCCAAAAAGCGGTAAGCATAATTATA
CGATGTCATTGCGACTGTAGCGGAAGCAACAAGCGGTGTTACGACGACTG
TAAACCTCCGTGATCCGGGGTGTGTTTCGAGACCGAAAGCAGTAATGCGA
TGGAAAATATGTCATTGGAAAGTTAACATCTCTGTGTGGAGTATTCGCAT
TACTTAGAGCTACACGCACATATTCTCCGATGTTGCCACACCAATACGAA
CTGGACAAAAACGCTCAATACGATACATGAAAACCGGTTAGTTCCGTTGC
TTTTTCTCTGGAGTGAACCCCTCGCCTCTTTACCCTGACGTTCTCACGCG
CACATCAGCATCGTCCCACGCCCTTGTGGCAAGCACATTGCCGTGCAGTC
GGATGACACGCCCCCCGGCCGACCGTGCGAGCAGTGCGCCGGGGAAGCTT
TGAGCGGAGGCATTCGACTCTGCCGTCCTTACATTTGGAATAACTCCAAC
TACCTGCTCAAAATGGCAAATGATCTCAACTTCCTCGCCGACGTAGCCCC
TCTCGCCGGCTGGCTTGAACACGACTTCAACCTGGAGGACAATCCTTTCC
TCCTGGCACCAACAGAGGTAAACGATGGAACAGAGGTAAATAAGGTTAAC
GGGGTAAATCGG
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Coding sequence (CDS) from alignment at H-elongata_contig12154:347..4658-

>mRNA_H-elongata_contig12154.1650.1 ID=mRNA_H-elongata_contig12154.1650.1|Name=mRNA_H-elongata_contig12154.1650.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3630bp|location=Sequence derived from alignment at H-elongata_contig12154:347..4658- (Himanthalia elongata Himel1 dioecious)
ATGGAAAATGGTTGCCACATAGGCGCCCCAAGGTATCGCAACACCAATAA
CGTTTTCCTTTTCAGGCATCTCCTGCCCTCCTTGGAGGAGCTCGGTATTA
CTCGAGAGACCTGTCTGCCGAAAAATAAGCTCGTCGTCGAGGAGACCGAG
TTGCGGGCAGCGACAGCGGCGCTGTCGTCGAGTCGTGAAGTCTCCGGGAC
GGTAGCAATGGATTTTTCGCGTTTGGTGAAGACTAGCTTACGGGCTATCA
ACTTCGATCACCAGGCGAGAAGCCCTTACTGCGGAACCTGCGCCTGATGG
AAAATGGTTGCCACATAGGCGCCCCAAGGTATCGCAACACCAATAACGTT
TTCCTTTTCAGGCATCTCCTGCCCTCCTTGGAGGAGCTCGGTATTACTCG
AGAGACCTGTCTGCCGAAAAATAAGCTCGTCGTCGAGGAGACCGAGTTGC
GGGCAGCGACAGCGGCGCTGTCGTCGAGTCGTGAAGTCTCCGGGACGGTA
GCAATGGATTTTTCGCGTTTGGTGAAGACTAGCTTACGGGCTATCAACTT
CGATCACCAGGCGAGAAGCCCTTACTGCGGAACCTGCGCCTGTCAACAAC
GTTTAGCGCGTGCCTTGGCCAGAATAGACTCAAGGGTCCAAGAGCAAATT
AAGAATGCATCGACCTCATTGAAAATCATTGAAACGAGAGGGGGTGATGT
GAGAGGTGGTCCGGAATCAAAAAGAAGAATCGAAAAGAACCGAGATCTTG
CTATCTTGGAGGCATTGGATAGCGCAAAGTCAACAACGTTTAGCGCGTGC
CTTGGCCAGAATAGACTCAAGGGTCCAAGAGCAAATTAAGAATGCATCGA
CCTCATTGAAAATCATTGAAACGAGAGGGGGTGATGTGAGAGGTGGTCCG
GAATCAAAAAGAAGAATCGAAAAGAACCGAGATCTTGCTATCTTGGAGGC
ATTGGATAGCGCAAAGCTCACATTCCAGGCCGATGTCCACACTGATGAAT
ATGAAAGGGTCATTCTATGCGAAGACCATGACGCTCCTCCCCTATGCAAG
ATATGGGTTGCGCGTGCATGCACCCAAAACCGGATACATTGCCGCTCACA
TTCCAGGCCGATGTCCACACTGATGAATATGAAAGGGTCATTCTATGCGA
AGACCATGACGCTCCTCCCCTATGCAAGATATGGGTTGCGCGTGCATGCA
CCCAAAACCGGATACATTGCCGGTATCGACATTACTTCATCAGTTATCCC
GAGCGCGATCGCATTGCAGCTTGGAAGGAAGGGAGAGATGCCAAAGCAGA
ACTGGACGTTCTTACGTATCGACATTACTTCATCAGTTATCCCGAGCGCG
ATCGCATTGCAGCTTGGAAGGAAGGGAGAGATGCCAAAGCAGAACTGGAC
GTTCTTACTTGCATAGCCAAGCGGGAAATACTATTGGCAGAGGCGGAAGC
TGAGGCCTCTGCTTGTAACAGGCGATACTTGTCAGAGGCAACGACGACGG
TTACGGAGCGAGACGTGGATTCCCTGCTGAAAATACTCGATCAATTGCAT
AGCCAAGCGGGAAATACTATTGGCAGAGGCGGAAGCTGAGGCCTCTGCTT
GTAACAGGCGATACTTGTCAGAGGCAACGACGACGGTTACGGAGCGAGAC
GTGGATTCCCTGCTGAAAATACTCGATCAACTCCGCCTGGCGTCAGTGCG
AGTGGTCGAAGCGATCTGTCTCTGGCGAAAGGACATTAAAGTCGCGGAGA
CGAAGTCCCAACTAACGCAGGCAAACCGATGTGATCCGACAAGATTCATG
CCTCCCAAGAAAGTATTTTCTTTTAAACATCCGAACGGTGCCCCAAGAGG
TAAGGGAGAAGTCGAAGACAGGCTATCAAGTTCAGTATCACCAGCAACAG
TGACATCGGGGCTAGGCGGTTTAAGCAACGCCACTGGACATATAGCAGAA
GCAACAGCAGCAGCACACGGGGGTGATACTGAAGATGAAGACCGCAAAGG
AAAGGGGAGCTCAAAGTTGACGCTGGATAGTATCAAGCGTCATCCGGTGG
GTCGTGCGAAGGTACAAGGAATGTCCGCGGAGCGGGAGAATCTTGCTGAA
GGTTATGTGGCGAGGGGGAGGTGGGTCGTGACGATCATGGTCCCGGGGAG
AAAGCTCTGGGAATCGTCTCCGGCAGTATTGTCAAAGCACAAGAGATTTC
GAAGGAGCAGGCAAGGCACCAAGATAGCGAGAAATCAGCTCCGCCTGGCG
TCAGTGCGAGTGGTCGAAGCGATCTGTCTCTGGCGAAAGGACATTAAAGT
CGCGGAGACGAAGTCCCAACTAACGCAGGCAAACCGATGTGATCCGACAA
GATTCATGCCTCCCAAGAAAGTATTTTCTTTTAAACATCCGAACGGTGCC
CCAAGAGGTAAGGGAGAAGTCGAAGACAGGCTATCAAGTTCAGTATCACC
AGCAACAGTGACATCGGGGCTAGGCGGTTTAAGCAACGCCACTGGACATA
TAGCAGAAGCAACAGCAGCAGCACACGGGGGTGATACTGAAGATGAAGAC
CGCAAAGGAAAGGGGAGCTCAAAGTTGACGCTGGATAGTATCAAGCGTCA
TCCGGTGGGTCGTGCGAAGGTACAAGGAATGTCCGCGGAGCGGGAGAATC
TTGCTGAAGGTTATGTGGCGAGGGGGAGGTGGGTCGTGACGATCATGGTC
CCGGGGAGAAAGCTCTGGGAATCGTCTCCGGCAGTATTGTCAAAGCACAA
GAGATTTCGAAGGAGCAGGCAAGGCACCAAGATAGCGAGAAATCAGATTT
ACCTTGGAGTGTTCAGGACAAAGAACGAAGCATTTAAAGTTTACGACGAC
GCACTTCATCGGGAGGCGGTGAAGCAAAGGTCGTCTGTGCTATGTATGCC
CAAAAAGCGATTTACCTTGGAGTGTTCAGGACAAAGAACGAAGCATTTAA
AGTTTACGACGACGCACTTCATCGGGAGGCGGTGAAGCAAAGGTCGTCTG
TGCTATGTATGCCCAAAAAGCGCATCGTCCCACGCCCTTGTGGCAAGCAC
ATTGCCGTGCAGTCGGATGACACGCCCCCCGGCCGACCGTGCGAGCAGTG
CGCCGGGGAAGCTTTGAGCGGAGGCATTCGACTCTGCCGTCCTTACATTT
GGAATAACTCCAACTACCTGCTCAAAATGGCAAATGATCTCAACTTCCTC
GCCGACGTAGCCCCTCTCGCCGGCTGGCTTGAACACGACTTCAACCTGGA
GGACAATCCTTTCCTCCTGGCACCAACAGAGGTAAACGATGGAACAGAGG
TAAATAAGGTTAACGGGGTAAATCGGCATCGTCCCACGCCCTTGTGGCAA
GCACATTGCCGTGCAGTCGGATGACACGCCCCCCGGCCGACCGTGCGAGC
AGTGCGCCGGGGAAGCTTTGAGCGGAGGCATTCGACTCTGCCGTCCTTAC
ATTTGGAATAACTCCAACTACCTGCTCAAAATGGCAAATGATCTCAACTT
CCTCGCCGACGTAGCCCCTCTCGCCGGCTGGCTTGAACACGACTTCAACC
TGGAGGACAATCCTTTCCTCCTGGCACCAACAGAGGTAAACGATGGAACA
GAGGTAAATAAGGTTAACGGGGTAAATCGG
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