mRNA_H-elongata_contig12148.1647.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12148.1647.1
Unique NamemRNA_H-elongata_contig12148.1647.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12148.1647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12148contigH-elongata_contig12148:7839..8236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.7381747-CDS-H-elongata_contig12148:7838..81951622929714.7381747-CDS-H-elongata_contig12148:7838..8195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12148 7839..8195 +
1691679129.5191734-CDS-H-elongata_contig12148:7838..81951691679129.5191734-CDS-H-elongata_contig12148:7838..8195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12148 7839..8195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.7514224-UTR-H-elongata_contig12148:8195..82361622929714.7514224-UTR-H-elongata_contig12148:8195..8236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12148 8196..8236 +
1691679129.531531-UTR-H-elongata_contig12148:8195..82361691679129.531531-UTR-H-elongata_contig12148:8195..8236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12148 8196..8236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12148.1647.1prot_H-elongata_contig12148.1647.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12148 7839..8195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12148.1647.1

>prot_H-elongata_contig12148.1647.1 ID=prot_H-elongata_contig12148.1647.1|Name=mRNA_H-elongata_contig12148.1647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
KCAHLLLPTPAFTDDNSLFLLSLREKLIFYRPRPATALKRLAHSRRNGAL
STFICPPQWQSYFLSFITPRHVHLFHLFPASLACINPQNASAHVAKINMP
ACGSTRERFWATFQSCHR*
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mRNA from alignment at H-elongata_contig12148:7839..8236+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12148.1647.1 ID=mRNA_H-elongata_contig12148.1647.1|Name=mRNA_H-elongata_contig12148.1647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=398bp|location=Sequence derived from alignment at H-elongata_contig12148:7839..8236+ (Himanthalia elongata Himel1 dioecious)
AAATGTGCCCATCTCCTTCTCCCAACCCCTGCCTTCACGGACGACAACTC
TCTCTTCCTCCTCAGCCTTCGCGAGAAGCTTATCTTTTATCGACCCCGTC
CCGCCACCGCGTTGAAACGTCTCGCCCACTCCCGGCGTAACGGTGCACTT
TCTACCTTCATTTGCCCTCCTCAGTGGCAAAGCTACTTCCTCAGTTTCAT
AACCCCGCGCCACGTCCATCTCTTCCATCTCTTCCCTGCCTCCTTGGCCT
GTATCAACCCTCAAAACGCCAGCGCGCACGTTGCGAAAATTAATATGCCC
GCTTGCGGCTCCACTCGCGAGAGATTCTGGGCGACATTCCAATCCTGCCA
CCGGTAGCCTTCCTGGGCTGTACCCACCGTCCGTTTCGGGTGACGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig12148:7839..8236+

>mRNA_H-elongata_contig12148.1647.1 ID=mRNA_H-elongata_contig12148.1647.1|Name=mRNA_H-elongata_contig12148.1647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig12148:7839..8236+ (Himanthalia elongata Himel1 dioecious)
AAATGTGCCCATCTCCTTCTCCCAACCCCTGCCTTCACGGACGACAACTC
TCTCTTCCTCCTCAGCCTTCGCGAGAAGCTTATCTTTTATCGACCCCGTC
CCGCCACCGCGTTGAAACGTCTCGCCCACTCCCGGCGTAACGGTGCACTT
TCTACCTTCATTTGCCCTCCTCAGTGGCAAAGCTACTTCCTCAGTTTCAT
AACCCCGCGCCACGTCCATCTCTTCCATCTCTTCCCTGCCTCCTTGGCCT
GTATCAACCCTCAAAACGCCAGCGCGCACGTTGCGAAAATTAATATGCCC
GCTTGCGGCTCCACTCGCGAGAGATTCTGGGCGACATTCCAATCCTGCCA
CCGGTAGAAATGTGCCCATCTCCTTCTCCCAACCCCTGCCTTCACGGACG
ACAACTCTCTCTTCCTCCTCAGCCTTCGCGAGAAGCTTATCTTTTATCGA
CCCCGTCCCGCCACCGCGTTGAAACGTCTCGCCCACTCCCGGCGTAACGG
TGCACTTTCTACCTTCATTTGCCCTCCTCAGTGGCAAAGCTACTTCCTCA
GTTTCATAACCCCGCGCCACGTCCATCTCTTCCATCTCTTCCCTGCCTCC
TTGGCCTGTATCAACCCTCAAAACGCCAGCGCGCACGTTGCGAAAATTAA
TATGCCCGCTTGCGGCTCCACTCGCGAGAGATTCTGGGCGACATTCCAAT
CCTGCCACCGGTAG
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