mRNA_H-elongata_contig121424.1639.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121424.1639.1
Unique NamemRNA_H-elongata_contig121424.1639.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121424.1639.1 vs. uniprot
Match: D7G5A9_ECTSI (Vesicle docking protein P115 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.560e-11
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 LERRILECPAGLQALVEVLRDPREEARNEVILLLRQV 111
            LE  ILECPAGLQALVEVLRDPREE RNEVILLL Q+
Sbjct:  134 LEACILECPAGLQALVEVLRDPREEVRNEVILLLGQL 170
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BLAST of mRNA_H-elongata_contig121424.1639.1 vs. uniprot
Match: A0A196S4S6_BLAHN (Intracellular protein transport protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S4S6_BLAHN)

HSP 1 Score: 52.4 bits (124), Expect = 9.010e-7
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 LERRILECPAGLQALVEVLRDPREEARNEVILLLRQV 111
            +E+ IL CP GLQ LV+VLRD REE RNE++LLLR +
Sbjct:  117 VEKSILGCPMGLQKLVDVLRDNREEVRNEMLLLLRSL 153
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BLAST of mRNA_H-elongata_contig121424.1639.1 vs. uniprot
Match: UPI00071193C3 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI00071193C3)

HSP 1 Score: 50.8 bits (120), Expect = 3.130e-6
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 LERRILECPAGLQALVEVLRDPREEARNEVILLLRQV 111
            +E+ IL CP GLQ L++VLRD REE RNE+++LLR +
Sbjct:  144 VEKSILGCPMGLQKLMDVLRDKREEVRNEMLILLRSL 180
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BLAST of mRNA_H-elongata_contig121424.1639.1 vs. uniprot
Match: D8LY34_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LY34_BLAHO)

HSP 1 Score: 47.8 bits (112), Expect = 3.890e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 LERRILECPAGLQALVEVLRDPREEARNEVILLLRQV 111
            +E+ IL C  GLQ LV+VL D REE RNE++LLLR +
Sbjct:  147 VEKSILGCSMGLQKLVDVLNDSREEVRNEMLLLLRSL 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121424.1639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5A9_ECTSI7.560e-1186.49Vesicle docking protein P115 n=2 Tax=Ectocarpus Ta... [more]
A0A196S4S6_BLAHN9.010e-764.86Intracellular protein transport protein n=1 Tax=Bl... [more]
UPI00071193C33.130e-659.46hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
D8LY34_BLAHO3.890e-559.46Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121424contigH-elongata_contig121424:677..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog2880.D7G5A9
Preferred nameUSO1
KEGG koko:K11675,ko:K20361,ko:K20478
GOsGO:0000139,GO:0001650,GO:0002009,GO:0002165,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007346,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010256,GO:0010389,GO:0010564,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019898,GO:0022406,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031312,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044719,GO:0045056,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048211,GO:0048219,GO:0048278,GO:0048471,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051726,GO:0060429,GO:0060562,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090066,GO:0090114,GO:0090498,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0140056,GO:1901987,GO:1901990,GO:1902749
EggNOG free text desc.Golgi vesicle docking
EggNOG OGsKOG0946@1,KOG0946@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.259614-CDS-H-elongata_contig121424:676..7901622929714.259614-CDS-H-elongata_contig121424:676..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121424 677..790 +
1691679129.34477-CDS-H-elongata_contig121424:676..7901691679129.34477-CDS-H-elongata_contig121424:676..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121424 677..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121424.1639.1prot_H-elongata_contig121424.1639.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121424 677..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121424.1639.1

>prot_H-elongata_contig121424.1639.1 ID=prot_H-elongata_contig121424.1639.1|Name=mRNA_H-elongata_contig121424.1639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
LERRILECPAGLQALVEVLRDPREEARNEVILLLRQV*
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mRNA from alignment at H-elongata_contig121424:677..790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121424.1639.1 ID=mRNA_H-elongata_contig121424.1639.1|Name=mRNA_H-elongata_contig121424.1639.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig121424:677..790+ (Himanthalia elongata Himel1 dioecious)
CTAGAGCGCCGCATCCTGGAGTGTCCTGCAGGCTTACAAGCTCTGGTTGA
GGTGTTACGAGATCCCAGGGAGGAAGCTCGGAACGAGGTCATCTTGCTGT
TGAGACAGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig121424:677..790+

>mRNA_H-elongata_contig121424.1639.1 ID=mRNA_H-elongata_contig121424.1639.1|Name=mRNA_H-elongata_contig121424.1639.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig121424:677..790+ (Himanthalia elongata Himel1 dioecious)
CTAGAGCGCCGCATCCTGGAGTGTCCTGCAGGCTTACAAGCTCTGGTTGA
GGTGTTACGAGATCCCAGGGAGGAAGCTCGGAACGAGGTCATCTTGCTGT
TGAGACAGGTATGACTAGAGCGCCGCATCCTGGAGTGTCCTGCAGGCTTA
CAAGCTCTGGTTGAGGTGTTACGAGATCCCAGGGAGGAAGCTCGGAACGA
GGTCATCTTGCTGTTGAGACAGGTATGA
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