mRNA_H-elongata_contig121299.1634.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: D8LC82_ECTSI (Haloacid dehalogenase (HAD) superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC82_ECTSI) HSP 1 Score: 330 bits (845), Expect = 1.380e-109 Identity = 156/219 (71.23%), Postives = 183/219 (83.56%), Query Frame = 1
Query: 1 VKPYERIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLERKVVFLDFFHKTCSVEPRAHGLVFITEGKR-FNRVLDEAA 654
V R+ +HPAL VPHLS+ H+G LDF L+ GCKGVIFDKDNTLT PY+D++HPLVEEG+++C+EVF +VC+MSNSAGTRDDP YADA+RIET LGIPVLRHDEKKPGG+ DVLAFF+GK PEG +RLDELCFVGDRL+TDVVFGN+HGMLTVHT PLTL+GDNRPA +FR+LERKV F+ FFH+TCSVEP+AH L EG R +R D AA
Sbjct: 83 VSSMSRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV-FMGFFHQTCSVEPQAHRLC--PEGARVLDREGDTAA 298
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A6H5K9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X3_9PHAE) HSP 1 Score: 323 bits (829), Expect = 3.040e-108 Identity = 153/215 (71.16%), Postives = 179/215 (83.26%), Query Frame = 1
Query: 1 VKPYERIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLERKVVFLDFFHKTCSVEPRAHGLVFITEGKRFNRVLD 645
V R+ +HPAL VPHLS+ ++G LDF L+ GCKGVIFDKDNTLT PY+D++HPLVEEG+++C+EVF +VC+MSNSAGTRDDP Y A+RIET LGIPVLRHDEKKPGG+ DVLAFFKGK PEG +RLDELCFVGDRL+TDVVFGN+HGMLTVHT PLTL+GDNRPA +FR+LERKV F+ FFH+TCSVEP+AH L EG R VLD
Sbjct: 10 VSSMTRVVRHPALAVPHLSLANIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYVHAIRIETALGIPVLRHDEKKPGGIADVLAFFKGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV-FMGFFHQTCSVEPQAHRLC--PEGAR---VLD 218
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A835Z207_9STRA (Mitochondrial PGP phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z207_9STRA) HSP 1 Score: 231 bits (589), Expect = 2.100e-71 Identity = 109/202 (53.96%), Postives = 148/202 (73.27%), Query Frame = 1
Query: 1 VKPYERIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGK-GPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLERKVVFLDFFHKTCSVEPRAHGL 603
V+ + +HP+L VPHL++ ++ LDF+AL+ G +G+IFDKDNTLT PY + LHP + +G R+C FG +VC+MSNSAGT DD + A++IET LGIPVLRH EKKPGG+ +VLAFF+ + EG + R +LC +GDRL+TDVVFGN+HGMLTVHT PLTL+GDN+ A++ R++E ++ F + H SVE H L
Sbjct: 14 VRTLGSVIRHPSLAVPHLALTNIAQLDFAALKAMGIRGIIFDKDNTLTAPYVEELHPAISDGFRRCQSHFGGSVCIMSNSAGTGDDVNFESAIKIETGLGIPVLRHREKKPGGLPEVLAFFRERCADEGIEAR--DLCVIGDRLLTDVVFGNLHGMLTVHTKPLTLQGDNKVALVARYIESRI-FFNIVHARFSVEAPQHRL 212
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A7S1ISK9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISK9_9EUGL) HSP 1 Score: 219 bits (559), Expect = 3.070e-67 Identity = 108/194 (55.67%), Postives = 135/194 (69.59%), Query Frame = 1
Query: 16 RIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLERKVVFLDFFHKTCSVEPRAH 597
R+ P+L +PH++V H+G LDF ALR+AGCKG++FDKDNTLT PY + +HPLV EG+ +CL F VC++SNSAGT DD GY A +IE LG+PV+RH EKKP G+ DVL FF + E +R EL VGDRL+TDVVFGN++GMLTVHT PLTL GDN+ A + R LE V F V+P H
Sbjct: 49 RVAAQPSLAIPHVTVTHIGCLDFHALREAGCKGIVFDKDNTLTAPYVEEVHPLVREGLDRCLREFQGRVCILSNSAGTDDDEGYEAARKIEAGLGLPVIRHKEKKPAGLQDVLDFFHHQSGEA--VRPTELVMVGDRLLTDVVFGNLYGMLTVHTRPLTLEGDNKVARVIRPLETAV----FLRLRGVVKPPVH 236
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: W7U306_9STRA (Haloacid dehalogenase superfamily protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U306_9STRA) HSP 1 Score: 185 bits (469), Expect = 1.670e-52 Identity = 93/175 (53.14%), Postives = 120/175 (68.57%), Query Frame = 1
Query: 16 RIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFG-NAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLE 537
++ ++P+L +PH+SV H+G LDF LR AG KGVIFDKDNT+T PY D +H V VFG + ++SNSAGT DD G+A A+RIE+ LG+PVLRH KKPG + +VL FK + G D ++LC +GDRL+TDV++GN GMLTVHT LT GDN+ A I R LE
Sbjct: 93 QVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKEC--GPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLE 265
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A8J9RZH6_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9RZH6_PHATR) HSP 1 Score: 180 bits (456), Expect = 1.710e-52 Identity = 93/182 (51.10%), Postives = 121/182 (66.48%), Query Frame = 1
Query: 19 IFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFG-NAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRG----DNRPAVIFRFLERKVV 549
+ + P L VP LSV V ++F+AL+D G V+FDKDNTLT PY++ +HPL +G+ + L VFG + V ++SNSAGT+DD Y DA+RIE VLGI V+RH+EKKPGG+ +VLA F P LC VGDRL+TD+VFGN+HGMLTVH PL DN A + R +E K +
Sbjct: 16 VLRRPGLMVPQLSVATVSQMNFTALKDHGIAAVMFDKDNTLTSPYENEIHPLAAQGIDEALRVFGRDRVAILSNSAGTKDDVDYTDAIRIENVLGIQVIRHEEKKPGGLDEVLAHFDLTDPA-------TLCMVGDRLLTDIVFGNLHGMLTVHCLPLCSGSENSKDNWTAKLLRPMENKAL 190
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A448ZEQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ0_9STRA) HSP 1 Score: 181 bits (458), Expect = 3.410e-52 Identity = 93/188 (49.47%), Postives = 127/188 (67.55%), Query Frame = 1
Query: 19 IFQHPALTVPHLSVDHVGMLDFSALRD-AGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFG-NAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTL----RGDNRPAVIFRFLERKVVFLDFF 564
+ +HP L VPH+SV +V L++ A+++ AG + ++FDKDNTLT PY ++H +G+++ E+FG V +MSNSAGT+DDPGY DA IE LGI V+RHDEKKPGG+ +VL F P LC VGDRL+TDVVFGN+H MLT+HT PL R DN P+ I R++E K ++ ++F
Sbjct: 16 VLRHPTLIVPHVSVANVSELNYRAMKECAGIRAILFDKDNTLTAPYDMTVHRDAAKGLKRAKEIFGAENVAIMSNSAGTKDDPGYEDAKMIEEALGIAVIRHDEKKPGGLDEVLKHFDVDDPA-------TLCMVGDRLLTDVVFGNLHSMLTIHTLPLCKGAENRQDNTPSKIIRYIENKGLYGNWF 196
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A7S1D5Y6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5Y6_CYCTE) HSP 1 Score: 173 bits (438), Expect = 2.140e-49 Identity = 86/181 (47.51%), Postives = 119/181 (65.75%), Query Frame = 1
Query: 25 QHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNA-VCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRP----AVIFRFLERKVVF 552
+ P L VPH+SV V +D+ AL+ V+FDKDNTLT PY+++LHP G+ L+VFG+A V ++SNSAGT DDP Y DA+ IE L I V+RH EKKPGG+ ++L F + + +C VGDRL+TDVVFGN+HGMLT+HT PL + +NR A + R +E ++++
Sbjct: 2 RRPGLMVPHVSVSSVSDIDYVALKKQKIDAVVFDKDNTLTAPYENTLHPKATRGIESALQVFGDANVAILSNSAGTNDDPDYRDALAIEEALQIKVIRHKEKKPGGLKEMLHHFSMLEKDDDNDDPSRICVVGDRLLTDVVFGNLHGMLTIHTLPLCVGAENRKDNVVAKLIRRMENRLLY 182
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A7S2PRD8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRD8_9STRA) HSP 1 Score: 174 bits (441), Expect = 2.340e-49 Identity = 91/188 (48.40%), Postives = 128/188 (68.09%), Query Frame = 1
Query: 19 IFQHPALTVPHLSVDHVGMLDFSALRD-AGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNA-VCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTL----RGDNRPAVIFRFLERKVVFLDFF 564
+ + P L PHL+V V ++++ALRD AG + VIFDKDNTL+ PY+ +HP ++G++ +EVFG + V V+SNSAGT+DDPGY DA +IE +GI V+RHDEKKPGG+ +V+ F + D +LC VGDRL+TD+VFGN+HGMLTVH PL + DN+ A R E V++ +++
Sbjct: 33 VMRRPYLASPHLAVGTVSEVNYTALRDEAGIRAVIFDKDNTLSAPYETVVHPKADQGLKNAMEVFGPSNVAVLSNSAGTKDDPGYEDAKKIEEAMGIAVIRHDEKKPGGLKEVMDHF-----DDVD-DASQLCMVGDRLLTDIVFGNLHGMLTVHCLPLCSGEENKKDNKIASSIRTTENLVLYTNWW 214
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A1Z5JVZ9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVZ9_FISSO) HSP 1 Score: 173 bits (438), Expect = 2.980e-49 Identity = 99/200 (49.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query: 19 IFQHPALTVPHLSVDHVGMLDFSAL-RDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNA-VCVMSNSAGT-RDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNR----PAVIFRFLERKVVFLDFFHKTCSVEPRAH 597
+ + PAL VPHLSV V +++ AL R AG + VIFDKDNTLT PY +HP +G+++ L+VFG V ++SNSAGT +DDP + DA++IE LGI V+RH EKKPGG+ +VL F P +LC VGDRL+TD+VFGNIHGMLTVHT PL DN A I R E KV++ F K H
Sbjct: 16 VARRPALLVPHLSVPTVSQINYDALKRCAGIEAVIFDKDNTLTAPYGSCVHPDASDGLQRVLDVFGKERVAILSNSAGTVQDDPDFRDALQIEEALGISVIRHKEKKPGGLEEVLQHFAMTDPA-------KLCMVGDRLLTDIVFGNIHGMLTVHTLPLCKGRDNARDNWTAKILRPAENKVLYGRLFGKALRRRKPGH 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig121299.1634.1 >prot_H-elongata_contig121299.1634.1 ID=prot_H-elongata_contig121299.1634.1|Name=mRNA_H-elongata_contig121299.1634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp MLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAVback to top mRNA from alignment at H-elongata_contig121299:140..1983+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig121299.1634.1 ID=mRNA_H-elongata_contig121299.1634.1|Name=mRNA_H-elongata_contig121299.1634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1844bp|location=Sequence derived from alignment at H-elongata_contig121299:140..1983+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig121299:140..1983+ >mRNA_H-elongata_contig121299.1634.1 ID=mRNA_H-elongata_contig121299.1634.1|Name=mRNA_H-elongata_contig121299.1634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig121299:140..1983+ (Himanthalia elongata Himel1 dioecious)back to top |