mRNA_H-elongata_contig121290.1633.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121290.1633.1
Unique NamemRNA_H-elongata_contig121290.1633.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388KLK7_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KLK7_CHABU)

HSP 1 Score: 62.8 bits (151), Expect = 1.740e-9
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   31 SSIAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHAT----SAVLLDKTKYRLINPNATRFATNLLSCMRMLN 264
            + I  + C AHTL LL+KD AKLPW + I+KR    VK++KNHH T    SA  L++ K  L+ P   RFA    S   MLN
Sbjct:  133 AKIPWVPCAAHTLSLLLKDKAKLPWISKIVKRAKMMVKFIKNHHRTVFLFSACSLEEKK-TLVMPTEVRFA----STFEMLN 209          
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388KII2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KII2_CHABU)

HSP 1 Score: 62.8 bits (151), Expect = 1.780e-9
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   37 IAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHAT----SAVLLDKTKYRLINPNATRF 228
            I  + C AHTL LL+K IAKLPW A I+KR    VK+++NHH T    SA  L++TK  LI P   RF
Sbjct:  747 IPXVXCAAHTLSLLLKGIAKLPWVATIVKRVKMMVKFIRNHHRTMALFSACSLEETK-TLIMPTXVRF 813          
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388M9H4_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M9H4_CHABU)

HSP 1 Score: 60.1 bits (144), Expect = 1.570e-8
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   31 SSIAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHAT----SAVLLDKTKYRLINPNATRFATNLLSCMRMLNVR 270
            + I  + C AHTL LL+KD+AKL W + I+KR    VK++K+HH T    SA  L++ K  L+ P   RFA+      R+ ++R
Sbjct:  381 AKIPWVSCAAHTLSLLLKDMAKLSWISKIVKRAKMMVKFIKHHHRTVSLFSACSLEEKK-TLVMPTEVRFASTFEMLNRLHDMR 463          
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388K4Z0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K4Z0_CHABU)

HSP 1 Score: 59.3 bits (142), Expect = 2.930e-8
Identity = 26/77 (33.77%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   37 IAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHATSAVLLDKT-KYRLINPNATRFATNLLSCMRMLN 264
            I  + C AH   LL++DI+KL W  G +KR  T +K+++NHH+T ++++       L+ P   RF +  +   R++N
Sbjct:  405 IPWVPCAAHCCSLLLRDISKLDWVTGTVKRGHTIIKFIRNHHSTHSLMMSMDDSLALLRPTEVRFGSVYMMLERLVN 481          
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388ME37_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388ME37_CHABU)

HSP 1 Score: 58.5 bits (140), Expect = 5.370e-8
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   31 SSIAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHATSAVL----LDKTKYRLINPNATRFAT 234
            + I  + C AHTL LLMK+IA L W A  +KR    V+++KNHH T A+     L++TK  L+ P   RFA+
Sbjct:  316 AKIPWLPCAAHTLSLLMKEIANLQWVAKHVKRAKMMVRFIKNHHRTVALYARCSLEETK-TLVMPTEVRFAS 386          
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388LZB2_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LZB2_CHABU)

HSP 1 Score: 57.4 bits (137), Expect = 1.360e-7
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   37 IAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHATSAVLLD-KTKYRLINPNATRFAT 234
            I  + C AH   LL++DI+KL W  G +KR  T VK+++NHH T++ ++   +   L+ P   RF +
Sbjct:  401 IPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRFGS 467          
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388L9Q9_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9Q9_CHABU)

HSP 1 Score: 57.4 bits (137), Expect = 1.390e-7
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   37 IAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHATSAVLLD-KTKYRLINPNATRFAT 234
            I  + C AH   LL++DI+KL W  G +KR  T VK+++NHH T++ ++   +   L+ P   RF +
Sbjct:  320 IPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLRPTEVRFGS 386          
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388LAH1_CHABU (RNA-directed DNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LAH1_CHABU)

HSP 1 Score: 57.4 bits (137), Expect = 1.420e-7
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   37 IAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHATSAVLLD-KTKYRLINPNATRFAT 234
            I  + C AH   LL++DI+KL W  G +KR  T VK+++NHH T++ ++   +   L+ P   RF +
Sbjct:  108 IPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLDSSLTLLQPTEVRFGS 174          
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388JVU7_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JVU7_CHABU)

HSP 1 Score: 57.0 bits (136), Expect = 1.880e-7
Identity = 29/84 (34.52%), Postives = 45/84 (53.57%), Query Frame = 1
Query:   31 SSIAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHATSAVLLD----KTKYRLINPNATRFATNLLSCMRMLNVR 270
            S I  + C AH   LL++DI KL W  G+IKR+ T VK+++NHH T ++++          L  P   RF +  +   R+ + R
Sbjct:  176 SRIPWVPCAAHCCSLLLRDIRKLDWIKGMIKRSHTIVKFIRNHHCTHSLMMSLMSLDNSLSLTRPTEVRFGSVYMMMERLYDRR 259          
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Match: A0A388L3T3_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L3T3_CHABU)

HSP 1 Score: 57.0 bits (136), Expect = 1.920e-7
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   37 IAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWVKNHHATSAVLLD-KTKYRLINPNATRFAT 234
            I  + C AH   LL++DI+KL W  G +KR  T VK+++NHH T++ ++   +   L+ P   RF +
Sbjct: 1328 IPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHMTNSFMMSLDSSLMLLRPTEVRFGS 1394          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121290.1633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A388KLK7_CHABU1.740e-946.34DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388KII2_CHABU1.780e-951.47Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388M9H4_CHABU1.570e-840.48DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388K4Z0_CHABU2.930e-833.77Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388ME37_CHABU5.370e-844.44Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388LZB2_CHABU1.360e-737.31DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388L9Q9_CHABU1.390e-737.31DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388LAH1_CHABU1.420e-737.31RNA-directed DNA polymerase n=1 Tax=Chara braunii ... [more]
A0A388JVU7_CHABU1.880e-734.52DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388L3T3_CHABU1.920e-737.31DUF659 domain-containing protein n=1 Tax=Chara bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121290contigH-elongata_contig121290:747..1016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.7310312-CDS-H-elongata_contig121290:746..10161622929713.7310312-CDS-H-elongata_contig121290:746..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121290 747..1016 +
1691679129.0227294-CDS-H-elongata_contig121290:746..10161691679129.0227294-CDS-H-elongata_contig121290:746..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121290 747..1016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121290.1633.1prot_H-elongata_contig121290.1633.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121290 747..1016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121290.1633.1

>prot_H-elongata_contig121290.1633.1 ID=prot_H-elongata_contig121290.1633.1|Name=mRNA_H-elongata_contig121290.1633.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
ILHTTYTVNTSSIAGMKCGAHTLDLLMKDIAKLPWCAGIIKRNLTAVKWV
KNHHATSAVLLDKTKYRLINPNATRFATNLLSCMRMLNVR
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mRNA from alignment at H-elongata_contig121290:747..1016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121290.1633.1 ID=mRNA_H-elongata_contig121290.1633.1|Name=mRNA_H-elongata_contig121290.1633.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig121290:747..1016+ (Himanthalia elongata Himel1 dioecious)
ATATTGCATACCACTTACACCGTGAACACGTCCAGCATTGCAGGCATGAA GTGTGGTGCGCATACGTTAGACCTGCTCATGAAGGACATCGCCAAGCTGC CGTGGTGCGCCGGCATCATCAAGCGCAACCTCACAGCTGTGAAGTGGGTG AAGAACCATCACGCCACGAGCGCGGTCCTACTCGACAAGACCAAGTACCG ACTCATCAACCCCAATGCAACCCGATTCGCCACCAACCTGCTCTCCTGCA TGCGCATGCTCAACGTAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig121290:747..1016+

>mRNA_H-elongata_contig121290.1633.1 ID=mRNA_H-elongata_contig121290.1633.1|Name=mRNA_H-elongata_contig121290.1633.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig121290:747..1016+ (Himanthalia elongata Himel1 dioecious)
ATATTGCATACCACTTACACCGTGAACACGTCCAGCATTGCAGGCATGAA
GTGTGGTGCGCATACGTTAGACCTGCTCATGAAGGACATCGCCAAGCTGC
CGTGGTGCGCCGGCATCATCAAGCGCAACCTCACAGCTGTGAAGTGGGTG
AAGAACCATCACGCCACGAGCGCGGTCCTACTCGACAAGACCAAGTACCG
ACTCATCAACCCCAATGCAACCCGATTCGCCACCAACCTGCTCTCCTGCA
TGCGCATGCTCAACGTAAGAATATTGCATACCACTTACACCGTGAACACG
TCCAGCATTGCAGGCATGAAGTGTGGTGCGCATACGTTAGACCTGCTCAT
GAAGGACATCGCCAAGCTGCCGTGGTGCGCCGGCATCATCAAGCGCAACC
TCACAGCTGTGAAGTGGGTGAAGAACCATCACGCCACGAGCGCGGTCCTA
CTCGACAAGACCAAGTACCGACTCATCAACCCCAATGCAACCCGATTCGC
CACCAACCTGCTCTCCTGCATGCGCATGCTCAACGTAAGA
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