mRNA_H-elongata_contig121144.1624.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121144.1624.1
Unique NamemRNA_H-elongata_contig121144.1624.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig121144.1624.1 vs. uniprot
Match: D7FM67_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM67_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.690e-10
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 SFDGDTAVAERPSPNARMHP-------PLQPQQAGSTTLPKLASREDVDRLERLFGSTGGEPLR 171
            SFDGDTAVAERPS N            P  P++A     PK+AS EDV+RL R+FGS GGEPLR
Sbjct:  244 SFDGDTAVAERPSSNLDARQANEGGMRPQAPKEA-----PKMASAEDVERLNRMFGSMGGEPLR 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121144.1624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM67_ECTSI2.690e-1056.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121144contigH-elongata_contig121144:155..1089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004880.1
Exons2
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929712.3696485-CDS-H-elongata_contig121144:154..2501622929712.3696485-CDS-H-elongata_contig121144:154..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121144 155..250 -
1691679128.729683-CDS-H-elongata_contig121144:154..2501691679128.729683-CDS-H-elongata_contig121144:154..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121144 155..250 -
1622929712.3817725-CDS-H-elongata_contig121144:1011..10891622929712.3817725-CDS-H-elongata_contig121144:1011..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121144 1012..1089 -
1691679128.7371638-CDS-H-elongata_contig121144:1011..10891691679128.7371638-CDS-H-elongata_contig121144:1011..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121144 1012..1089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121144.1624.1prot_H-elongata_contig121144.1624.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121144 155..1089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121144.1624.1

>prot_H-elongata_contig121144.1624.1 ID=prot_H-elongata_contig121144.1624.1|Name=mRNA_H-elongata_contig121144.1624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
SFDGDTAVAERPSPNARMHPPLQPQQAGSTTLPKLASREDVDRLERLFGS
TGGEPLR*
back to top

mRNA from alignment at H-elongata_contig121144:155..1089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121144.1624.1 ID=mRNA_H-elongata_contig121144.1624.1|Name=mRNA_H-elongata_contig121144.1624.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=935bp|location=Sequence derived from alignment at H-elongata_contig121144:155..1089- (Himanthalia elongata Himel1 dioecious)
AGCTTTGATGGGGACACGGCTGTGGCGGAGCGTCCTTCGCCAAACGCTCG
AATGCACCCGCCGCTGCAACCTCAGCAGGTGCGTACTCGCCTCTGAAATA
ATCATCTGAAACATGCTTTGTCTCTTGCTTGAACTATACCATTGTTACTA
CATTACTATATTATAACGTATCATCTTGACGATAGTTGGTCATAGTCCCC
TGGACTTCACCTCTCATGGCGTAATGAAGCTATTGATGTTCGCAGGGTTT
GAATGAGTTCATATGTTTTATTAACAAAAAAGTGTAGGGTTAGGGTTAGA
GCCAAACCCGAGAGAGATAGTGTAGTCTATTTATATATATATATATGTTA
ATAAATATATTAATATTTAGAAGCAAATACAAAATGGACGGAGTTAGGGT
AAGCAAAAATAATTCGGTCACAGTATAAAGCTACCTATACTATAATAAAT
AGTCTATATGTGCTAATCTAATACTGTATAATGTATTGTAATGTAATCTC
GTATCGTGCTAACGCCATCCGTGCATTTATCTACACATCCATCAAAAGTC
AAATACTTCGCACAGTTCGCATAGCAGGGTTAGGGCCAAGCGATATCCTC
ATACAGATATGAATATACAGTAGAGATAGAGGTATCTAGTAACGGTATCC
AAGGATATCCTAATGTGAGACCGACGCCCTTAAGCTGCCTGACTTCGCGA
TGCATGCTGCCCATGGCTTGCGATTTGGGCGTCTTCGATTCAAAATCAAT
GTTTTGTTATTGCCTATTACTTATGTTTGCAATGACCCTAACCCTAACCC
TGAATGACTTAATGTTGCCAGGGTGAGGGTGAGACAGAGGCAGGGTCGAC
AACACTACCCAAATTGGCCTCTAGGGAGGACGTTGATCGTCTGGAACGGC
TCTTCGGCTCCACCGGTGGCGAGCCGCTGCGCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig121144:155..1089-

>mRNA_H-elongata_contig121144.1624.1 ID=mRNA_H-elongata_contig121144.1624.1|Name=mRNA_H-elongata_contig121144.1624.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig121144:155..1089- (Himanthalia elongata Himel1 dioecious)
AGCTTTGATGGGGACACGGCTGTGGCGGAGCGTCCTTCGCCAAACGCTCG
AATGCACCCGCCGCTGCAACCTCAGCAGAGCTTTGATGGGGACACGGCTG
TGGCGGAGCGTCCTTCGCCAAACGCTCGAATGCACCCGCCGCTGCAACCT
CAGCAGGCAGGGTCGACAACACTACCCAAATTGGCCTCTAGGGAGGACGT
TGATCGTCTGGAACGGCTCTTCGGCTCCACCGGTGGCGAGCCGCTGCGCT
AGGCAGGGTCGACAACACTACCCAAATTGGCCTCTAGGGAGGACGTTGAT
CGTCTGGAACGGCTCTTCGGCTCCACCGGTGGCGAGCCGCTGCGCTAG
back to top