mRNA_H-elongata_contig121127.1621.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121127.1621.1
Unique NamemRNA_H-elongata_contig121127.1621.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: D7G8Z0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z0_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 5.080e-60
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMRECPESVAGRRVVEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCKV 297
            DWEDWDPSQGNFLHHMVAGSIAGITEHTV+YP+DT KTYVQCMRECPE+VAGRRV+E+VRGQGMLRLWRGV TMF G +PAHALYFSVLEYCKV
Sbjct:   17 DWEDWDPSQGNFLHHMVAGSIAGITEHTVMYPMDTFKTYVQCMRECPEAVAGRRVMELVRGQGMLRLWRGVGTMFTGCVPAHALYFSVLEYCKV 110
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BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: A0A6H5KLW9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW9_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.050e-56
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMRECPESVAGRRVVEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCK 294
            DWEDWDPSQGNFLHHMVAGSIAGITEHTV+YP+DT KTYVQCMRECPE+VAGRRV+EMVRGQGMLRLWRGV TMF G +PAHALYFSVLE CK
Sbjct:   17 DWEDWDPSQGNFLHHMVAGSIAGITEHTVMYPVDTFKTYVQCMRECPEAVAGRRVMEMVRGQGMLRLWRGVGTMFTGCVPAHALYFSVLENCK 109
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BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: A0A835Z185_9STRA (Mitoferrin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z185_9STRA)

HSP 1 Score: 162 bits (410), Expect = 8.580e-47
Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMRECPESVAGRRVVEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCK 294
            DWEDW   +GNF+HHM+AGSIAG+TEHTV++P+DTLKT++QCMRECPE  AG RV+EMVRGQGMLRLWRGV TMFVG +PAHA YFS+LE CK
Sbjct:   13 DWEDWS-GEGNFVHHMLAGSIAGVTEHTVMFPVDTLKTHIQCMRECPERQAGSRVLEMVRGQGMLRLWRGVGTMFVGCVPAHAAYFSILELCK 104
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BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: A0A835YZ17_9STRA (Mitoferrin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ17_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.000e-44
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMRECPESVAGRRVVEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCK 294
            DWEDW   +GNF+HHM+AGSIAGITEHTV++P+DT+KT++QCMRECPE  AG RV+EMVRGQGMLRLWRGV TMF+G +PAHA YFSVLE  K
Sbjct:   13 DWEDWS-GEGNFVHHMLAGSIAGITEHTVMFPVDTIKTHIQCMRECPERQAGARVLEMVRGQGMLRLWRGVGTMFMGCVPAHAAYFSVLEASK 104
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BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: A0A7S3Y5E3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5E3_HETAK)

HSP 1 Score: 122 bits (306), Expect = 8.050e-32
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMR---ECPESVAGRR--VVEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCKVS 300
            +WEDWDP +G+F  HMVAGS AG+ EH  +YP+DTLKT+VQC +   EC      R    ++ ++ QGMLRLWRGV+TM +G IPAHA YFSV+E CK S
Sbjct:   11 EWEDWDPEKGSFAVHMVAGSCAGVVEHCSMYPIDTLKTHVQCHKPRQECSSRFICRSFSAIDFIQKQGMLRLWRGVNTMILGCIPAHAAYFSVVELCKES 110
[Close]
BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: A0A7S3Y5R4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5R4_HETAK)

HSP 1 Score: 122 bits (306), Expect = 1.330e-31
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMR---ECPESVAGRR--VVEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCKVS 300
            +WEDWDP +G+F  HMVAGS AG+ EH  +YP+DTLKT+VQC +   EC      R    ++ ++ QGMLRLWRGV+TM +G IPAHA YFSV+E CK S
Sbjct:   11 EWEDWDPEKGSFAVHMVAGSCAGVVEHCSMYPIDTLKTHVQCHKPRQECSSRFICRSFSAIDFIQKQGMLRLWRGVNTMILGCIPAHAAYFSVVELCKES 110
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BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: A0A7S2V5B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5B9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.660e-31
Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMR---ECPESVAGRRVVEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCK 294
            +WEDW+P+ G+F+ HM+AGS+AG+ EH  ++PLDT+KT++QC R   +C E  A   V  + + +G+LRLWRGVSTM  GSIPAHA YFSV+E CK
Sbjct:    9 EWEDWNPANGSFISHMLAGSVAGVVEHISLFPLDTVKTHIQCHRAKADCMEC-AHTSVWRLCQREGLLRLWRGVSTMLFGSIPAHASYFSVIEICK 103
[Close]
BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: A0A1V9ZQ15_9STRA (Mitoferrin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ15_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.160e-28
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMRECPESVAGRRV------VEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCKVS 300
            DWE+W P +G+FLHHM AGS AG+ EH  I+P+DT+KT++QC R CP +    R+       +++   G LRL+RGVSTM   S+PAHALYFSV E CK S
Sbjct:    8 DWEEWTPEKGSFLHHMAAGSAAGVVEHVSIFPIDTIKTHMQCQR-CPVNSTVLRMNAFQTAKKLIAEDGPLRLFRGVSTMLGASLPAHALYFSVFEACKKS 107
[Close]
BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: A0A067D5P7_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D5P7_SAPPC)

HSP 1 Score: 112 bits (281), Expect = 6.000e-28
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMRECPESVAGRRV------VEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCKVS 300
            DWE+W P +G+F+HHM+AGS AG+ EH  I+P+DT+KT++QC R CP +    R+        +V   G LRL+RGVSTM   S+PAHALYFSV E CK S
Sbjct:    8 DWEEWTPEKGSFVHHMLAGSAAGVVEHVSIFPIDTIKTHMQCQR-CPVNSNAIRMNAFQTAKRLVAEDGPLRLFRGVSTMLGASLPAHALYFSVFEACKKS 107
[Close]
BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Match: H3GPZ2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GPZ2_PHYRM)

HSP 1 Score: 110 bits (276), Expect = 1.400e-27
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:   16 DWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMRECP------ESVAGRRVVEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCKVS 300
            DWE+W P +G+F+HHM+AGS AG+ EH  I+P+DT+KT++QC R CP      E  A +   ++V  +G LRL+RGVSTM   S+PAHA+YFSV E  K S
Sbjct:    7 DWEEWSPEKGSFVHHMLAGSAAGVAEHVSIFPIDTVKTHMQCQR-CPVNGKPLELSARQTARKLVAEEGPLRLFRGVSTMLGASLPAHAVYFSVFEAAKKS 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121127.1621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Z0_ECTSI5.080e-6089.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLW9_9PHAE1.050e-5689.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835Z185_9STRA8.580e-4776.34Mitoferrin-like protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ17_9STRA1.000e-4475.27Mitoferrin-like protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y5E3_HETAK8.050e-3257.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y5R4_HETAK1.330e-3157.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V5B9_9STRA3.660e-3156.25Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1V9ZQ15_9STRA3.160e-2853.47Mitoferrin n=1 Tax=Thraustotheca clavata TaxID=745... [more]
A0A067D5P7_SAPPC6.000e-2853.47Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
H3GPZ2_PHYRM1.400e-2752.48Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121127contigH-elongata_contig121127:1280..1582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue4.5e-46
Seed eggNOG ortholog2880.D7G8Z0
KEGG koko:K15113
KEGG TC2.A.29.5
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006839,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0034755,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0048250,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0097286,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:1990542
EggNOG free text desc.iron import into the mitochondrion
EggNOG OGsKOG0760@1,KOG0760@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-15_002540.1
Exons1
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929712.067342-CDS-H-elongata_contig121127:1279..15821622929712.067342-CDS-H-elongata_contig121127:1279..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121127 1280..1582 -
1691679128.6303225-CDS-H-elongata_contig121127:1279..15821691679128.6303225-CDS-H-elongata_contig121127:1279..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121127 1280..1582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121127.1621.1prot_H-elongata_contig121127.1621.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121127 1280..1582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121127.1621.1

>prot_H-elongata_contig121127.1621.1 ID=prot_H-elongata_contig121127.1621.1|Name=mRNA_H-elongata_contig121127.1621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MSDPSDWEDWDPSQGNFLHHMVAGSIAGITEHTVIYPLDTLKTYVQCMRE
CPESVAGRRVVEMVRGQGMLRLWRGVSTMFVGSIPAHALYFSVLEYCKVS
*
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mRNA from alignment at H-elongata_contig121127:1280..1582-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121127.1621.1 ID=mRNA_H-elongata_contig121127.1621.1|Name=mRNA_H-elongata_contig121127.1621.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig121127:1280..1582- (Himanthalia elongata Himel1 dioecious)
ATGTCTGATCCCTCAGACTGGGAGGACTGGGACCCGTCTCAGGGTAATTT
CTTGCACCACATGGTGGCGGGATCGATCGCGGGCATCACCGAGCACACCG
TAATATATCCCCTCGACACCCTCAAGACCTACGTGCAATGCATGCGTGAA
TGCCCCGAGTCCGTCGCGGGTCGACGCGTCGTCGAAATGGTGAGAGGGCA
GGGAATGCTCCGGCTATGGCGTGGGGTGAGCACCATGTTCGTGGGTTCAA
TTCCAGCCCACGCCCTTTACTTCAGCGTTCTGGAGTATTGCAAGGTGAGC
TAG
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Coding sequence (CDS) from alignment at H-elongata_contig121127:1280..1582-

>mRNA_H-elongata_contig121127.1621.1 ID=mRNA_H-elongata_contig121127.1621.1|Name=mRNA_H-elongata_contig121127.1621.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig121127:1280..1582- (Himanthalia elongata Himel1 dioecious)
ATGTCTGATCCCTCAGACTGGGAGGACTGGGACCCGTCTCAGGGTAATTT
CTTGCACCACATGGTGGCGGGATCGATCGCGGGCATCACCGAGCACACCG
TAATATATCCCCTCGACACCCTCAAGACCTACGTGCAATGCATGCGTGAA
TGCCCCGAGTCCGTCGCGGGTCGACGCGTCGTCGAAATGGTGAGAGGGCA
GGGAATGCTCCGGCTATGGCGTGGGGTGAGCACCATGTTCGTGGGTTCAA
TTCCAGCCCACGCCCTTTACTTCAGCGTTCTGGAGTATTGCAAGGTGAGC
TAGATGTCTGATCCCTCAGACTGGGAGGACTGGGACCCGTCTCAGGGTAA
TTTCTTGCACCACATGGTGGCGGGATCGATCGCGGGCATCACCGAGCACA
CCGTAATATATCCCCTCGACACCCTCAAGACCTACGTGCAATGCATGCGT
GAATGCCCCGAGTCCGTCGCGGGTCGACGCGTCGTCGAAATGGTGAGAGG
GCAGGGAATGCTCCGGCTATGGCGTGGGGTGAGCACCATGTTCGTGGGTT
CAATTCCAGCCCACGCCCTTTACTTCAGCGTTCTGGAGTATTGCAAGGTG
AGCTAG
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