mRNA_H-elongata_contig12111.1620.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: A0A6H5KNW1_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW1_9PHAE) HSP 1 Score: 221 bits (563), Expect = 5.530e-69 Identity = 110/131 (83.97%), Postives = 119/131 (90.84%), Query Frame = 1
Query: 1 GDEDEIDEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
GDEDEID DV+AEMDRVA GGAD DVVKV+ LRKVYP GAKVAVK+TSLGIPRGECFGLLG+NGAGKSSTLAILSGE+P T GSAYLSGF+V +NP+EIHRLVGYCPQFDALFE LTGREHL LYA+IK
Sbjct: 57 GDEDEIDADVRAEMDRVAGGGADNDVVKVKGLRKVYPTSGGAKVAVKSTSLGIPRGECFGLLGINGAGKSSTLAILSGELPPTTGSAYLSGFDVGKNPEEIHRLVGYCPQFDALFETLTGREHLALYASIK 187
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI) HSP 1 Score: 223 bits (569), Expect = 4.170e-65 Identity = 111/131 (84.73%), Postives = 120/131 (91.60%), Query Frame = 1
Query: 1 GDEDEIDEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
GDEDEIDEDV+AEMDRVA GGAD DVVKV+ LRKVYP GAKVAVK+TSLGIPRGECFGLLG+NGAGKSSTLAILSGE+P T GSAYLSGF+V +NP+EIHRLVGYCPQFDALFE LTGREHL LYA+IK
Sbjct: 1519 GDEDEIDEDVRAEMDRVAGGGADNDVVKVKGLRKVYPASGGAKVAVKSTSLGIPRGECFGLLGINGAGKSSTLAILSGELPPTTGSAYLSGFDVGKNPEEIHRLVGYCPQFDALFETLTGREHLALYASIK 1649
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE) HSP 1 Score: 219 bits (557), Expect = 1.120e-63 Identity = 109/131 (83.21%), Postives = 117/131 (89.31%), Query Frame = 1
Query: 1 GDEDEIDEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
GDED IDEDV+AEMDRVA G AD DVVKV LRKVYP+ NGAKVAVK+TSLGIPRGECFGLLG+NGAGKSSTLAILSGE+P T GSA L GF+V +NP+EIHRLVGYCPQFDALFE LTGREHL LYAAIK
Sbjct: 622 GDEDNIDEDVRAEMDRVATGAADNDVVKVAGLRKVYPVSNGAKVAVKSTSLGIPRGECFGLLGINGAGKSSTLAILSGELPPTTGSALLGGFDVGKNPEEIHRLVGYCPQFDALFETLTGREHLALYAAIK 752
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI) HSP 1 Score: 216 bits (551), Expect = 1.100e-62 Identity = 108/131 (82.44%), Postives = 117/131 (89.31%), Query Frame = 1
Query: 1 GDEDEIDEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
GDED ID+DV+AEMDRVA G AD DVVKV LRKVYP+ NGAKVAVK+TSLGIPRGECFGLLG+NGAGKSSTLAILSGE+P T GSA L GF+V +NP+EIHRLVGYCPQFDALFE LTGREHL LYAAIK
Sbjct: 1539 GDEDNIDKDVRAEMDRVAAGAADNDVVKVAGLRKVYPVSNGAKVAVKSTSLGIPRGECFGLLGINGAGKSSTLAILSGELPPTTGSALLGGFDVGKNPEEIHRLVGYCPQFDALFETLTGREHLALYAAIK 1669
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE) HSP 1 Score: 182 bits (461), Expect = 5.930e-52 Identity = 89/131 (67.94%), Postives = 106/131 (80.92%), Query Frame = 1
Query: 1 GDEDEIDEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
G+ D +DEDV E +RV GG DGD VK++ + KVYP GAKVAVK+TSLGIP+G+CFGLLG+NGAGKSS L+ILSG +PAT G+A L G +V + P+ IHRL+GYCPQFDALFE LTGREHL LYAAIK
Sbjct: 122 GEGDVLDEDVAREAERVRQGGGDGDAVKIEGVTKVYPTHAGAKVAVKSTSLGIPKGQCFGLLGINGAGKSSLLSILSGGIPATAGAASLGGHDVGKEPEAIHRLMGYCPQFDALFETLTGREHLRLYAAIK 252
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI) HSP 1 Score: 182 bits (461), Expect = 1.450e-50 Identity = 89/131 (67.94%), Postives = 106/131 (80.92%), Query Frame = 1
Query: 1 GDEDEIDEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
G+ D +DEDV E +RV GG DGD VK++ + KVYP GAKVAVK+TSLGIP+G+CFGLLG+NGAGKSS L+ILSG +PAT G+A L G +V + P+ IHRL+GYCPQFDALFE LTGREHL LYAAIK
Sbjct: 1541 GEGDVLDEDVARETERVRQGGGDGDAVKIEGVTKVYPTHAGAKVAVKSTSLGIPKGQCFGLLGINGAGKSSLLSILSGGIPATAGAASLGGHDVGKEPEAIHRLMGYCPQFDALFETLTGREHLRLYAAIK 1671
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: A0A7R9U9S9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9S9_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.800e-45 Identity = 82/125 (65.60%), Postives = 99/125 (79.20%), Query Frame = 1
Query: 19 DEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
DEDV AE +RV +GGADGDVV ++ LRKV+P G KVAV+ S GIPRGECFG LG+NGAGKS+TL+ILSGE P T G+AY++GF++ N +I R +GYCPQFDAL E+LT REHL LYA IK
Sbjct: 576 DEDVAAEANRVLDGGADGDVVCLRQLRKVFPTPVGPKVAVRKLSFGIPRGECFGFLGINGAGKSTTLSILSGEFPPTSGTAYIAGFDIQHNQGKIRRRIGYCPQFDALLELLTVREHLELYARIK 700
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: A0A7S1UE30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE30_9STRA) HSP 1 Score: 164 bits (414), Expect = 3.060e-44 Identity = 83/132 (62.88%), Postives = 101/132 (76.52%), Query Frame = 1
Query: 1 GDEDEI-DEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
GD E+ D DV AE +RVA GGAD DVV+++ LRKV+P G KVAVK+ S GIPRGECFG LG+NGAGKS+TLAILSGE P T G+A+++GF++ + I R +GYCPQFDAL E+LT EHL LYA IK
Sbjct: 949 GDASEVEDTDVAAEAERVAGGGADDDVVRLERLRKVFPTPVGPKVAVKHMSFGIPRGECFGFLGINGAGKSTTLAILSGEFPPTSGTAFIAGFDIQADQSRIRRRIGYCPQFDALLELLTVSEHLELYARIK 1080
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK) HSP 1 Score: 162 bits (411), Expect = 7.900e-44 Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = 1
Query: 13 EIDEDVKAEMDRVANGGADGDVVKVQNLRKVYP---IRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
E+D DV E DRV GGA+GDV+++ +RK +P G K AV+ SLGIPRG+CFGLLG+NGAGK++TL ILSGE P T G+A+L+G N+ NP+E HRL+GYCPQFDA+F LTGRE+L LY +K
Sbjct: 1532 EVDADVAEEEDRVLGGGAEGDVIRIHRIRKAFPDGPCGRGYKEAVRGLSLGIPRGQCFGLLGINGAGKTTTLTILSGEQPPTEGAAFLAGLNIAENPEEAHRLIGYCPQFDAIFGSLTGRENLWLYGRLK 1661
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Match: A0A2P4YAL6_9STRA (ABC transporter lipid exporter ABCA1 family (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAL6_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.360e-43 Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = 1
Query: 13 EIDEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSLGIPRGECFGLLGVNGAGKSSTLAILSGEMPATLGSAYLSGFNVNRNPQEIHRLVGYCPQFDALFEMLTGREHLMLYAAIK 393
+IDEDVK E DRVA+GGADGD VK+ LRKVYP G KVAV++ S G+ RGECFG LG+NGAGK++T+ +L+G++P + G+A L GFN+ E+ R +GYCPQFDALF++LT REHL L+ AIK
Sbjct: 150 DIDEDVKKEADRVASGGADGDAVKLMGLRKVYP---GGKVAVRDLSFGLQRGECFGFLGINGAGKTTTMKMLTGDVPPSSGTATLGGFNILTEQIEVRRQIGYCPQFDALFDLLTVREHLELFGAIK 273 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12111.1620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12111.1620.1 >prot_H-elongata_contig12111.1620.1 ID=prot_H-elongata_contig12111.1620.1|Name=mRNA_H-elongata_contig12111.1620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp GDEDEIDEDVKAEMDRVANGGADGDVVKVQNLRKVYPIRNGAKVAVKNTSback to top mRNA from alignment at H-elongata_contig12111:1366..2344- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12111.1620.1 ID=mRNA_H-elongata_contig12111.1620.1|Name=mRNA_H-elongata_contig12111.1620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=979bp|location=Sequence derived from alignment at H-elongata_contig12111:1366..2344- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12111:1366..2344- >mRNA_H-elongata_contig12111.1620.1 ID=mRNA_H-elongata_contig12111.1620.1|Name=mRNA_H-elongata_contig12111.1620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig12111:1366..2344- (Himanthalia elongata Himel1 dioecious)back to top |