mRNA_H-elongata_contig12105.1617.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA) HSP 1 Score: 263 bits (671), Expect = 2.250e-75 Identity = 160/362 (44.20%), Postives = 197/362 (54.42%), Query Frame = 1
Query: 1 RFKYKGTFNEVWTLRAFGYQYMMS--ALRGRIARGIETIVREADKNGVAVLGLGALNKAEFINHGGEDLVNAFEPQKTRIVHGNTLTAAVVVENVKQAFERGIDVPGDPDXXXXXXXXXXGEVNTTGNTAAAREEKTALPPRVFLTGSTSKVGRAVALKLALDGYDVVCCSSSDERFASLQWELRALRSRSGKREGTGLALQEGFPDGGAFSGYSDGGVETK-----------DAGT--LLRARRVDEGVRHRLWVIGKYDTSVRLHVPLGASAVVFAVPCPLE-GYRSDVSVVTGGILRMDASLCSPRRFHFLLPFDQLYACHAAAIVHYRMGWRHHEVGKVDVSRMEPTLQAAHDCGFHI 1038
R+ Y G NE+W RA G+ Y++ ++ RIAR +E ++R AD+ G+ VLGLGALNKAEFIN GG+D ++A P+ TR+VHGNTLTAAVVVEN+ +A AA + P VFLTG+TSKVGRAVAL+LAL G V+CC+SS RF +L +L L DA L R V +GV LW +GK D +V H+P GA+AVVFAVP PL G RSDV++V GG L +DA+ C R LLP D +YACHAAA VH W HHEVG VDV RM PTLQAA DCGF +
Sbjct: 31 RYTYDGLVNELWLSRAPGFMYLLPWRFMQSRIARNVEDMLRSADRQGIQVLGLGALNKAEFINRGGDDTLSAVRPKFTRLVHGNTLTAAVVVENIMRAI------------------------------AARQRGHEQQEPTVFLTGATSKVGRAVALQLALRGVRVLCCTSSAPRFQALLSDLNTLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADARPPLLTRCAHVSDGVHCALWAVGKSDAAVAAHLPRGATAVVFAVPSPLPAGQRSDVTLVDGGTLLLDAARCGRRALGLLLPHDAVYACHAAAAVHAARHWTHHEVGPVDVHRMAPTLQAAFDCGFRL 362
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: A0A6H5JP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP11_9PHAE) HSP 1 Score: 204 bits (519), Expect = 9.880e-56 Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = 1
Query: 664 AGTLLRARRVDEGVRHRLWVIGKYDTSVRLHVPLGASAVVFAVPCPLEGYRSDVSVVTGGILRMDASLCSPRRFHFLLPFDQLYACHAAAIVHYRMGWRHHEVGKVDVSRMEPTLQAAHDCGFHI 1038
AG L RARR+DEGV RLWV+GK+DTSVRLH+PL ASAVVFAVPCPLEG+R DV+ VTGGI+RMD S C+ RRFH LLPFDQLYACHAAAIVH+RMGW HHEVGKVDV RM L+AA DCGF +
Sbjct: 5 AGGLKRARRLDEGVYFRLWVVGKFDTSVRLHIPLKASAVVFAVPCPLEGHRPDVTSVTGGIVRMDLSCCTARRFHVLLPFDQLYACHAAAIVHHRMGWAHHEVGKVDVGRMATILKAAGDCGFSV 129
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: L1J6G4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J6G4_GUITC) HSP 1 Score: 190 bits (483), Expect = 2.600e-50 Identity = 131/364 (35.99%), Postives = 167/364 (45.88%), Query Frame = 1
Query: 4 FKYKGTFNEVWTLRAFGYQYMMSALRGRIARGIETIVREADKNGVAVLGLGALNKAEFINHGGEDLVNAFEPQKTR----IVHGNTLTAAVVVENVKQAFERGIDVPGDPDXXXXXXXXXXGEVNTTGNTAAAREEKTALPPRVFLTGSTSKVGRAVALKLALDGYDVVCCSSSDERFASLQWELRALRSRSGKREGTGLALQEGFPDGGAFSGYSDGGVETKDAGTLLRARRVDEGVRHRLWVIGKYDTSVRLHVPLGASAVVFAVPCPLEGY---------------RSDVSVVTGGILRMDASLCSPRRFHFLLPFDQLYACHAAAIVHYRMGWRHHEVGKVDVSRMEPTLQAAHDCGFHI 1038
F + G N VW R FG+Q++ R I I+READ+ G VLGLGALNKAEF+N GE+LV P+ T+ +VHGNTLTAAVVVENV + F + E+ + VFLTG TSK ++A L L +G ++ AR + +GV R+WV+GKYD VR H+P AVVF+VPCPL G R DV+V+ GG+LRM CS R F LLP ++YACHAAA+VH MGW HEVG+VD+S++ L AA GF I
Sbjct: 472 FSFSGCRNSVWLSRLFGWQFISFPRRAH--DNICEILREADRLGYKVLGLGALNKAEFVNKSGEELVREVNPKTTKALNQVVHGNTLTAAVVVENVIELFRQS-------------------------------EQSCEMRREVFLTGPTSKDSMSLAT----------------------------------------LHLPQG---------------------SIRYARSLQDGVFCRVWVVGKYDLGVREHIPRDGIAVVFSVPCPLTGNVLSVESAMNSRYIRERKDVTVIDGGLLRMQPERCSKRSFSILLPEHEVYACHAAAMVHANMGWDEHEVGEVDLSKLPVVLHAAKAMGFEI 741
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: A0A812YZZ0_9DINO (CER3 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812YZZ0_9DINO) HSP 1 Score: 153 bits (386), Expect = 1.760e-37 Identity = 119/345 (34.49%), Postives = 158/345 (45.80%), Query Frame = 1
Query: 10 YKGTFNEVWTLRAFGYQYMMSALRGRIARGIETIVREADKNGVAVLGLGALNKAEFINHGGEDLVNAFEPQKTRIVHGNTLTAAVVVENVKQAFERGIDVPGDPDXXXXXXXXXXGEVNTTGNTAAAREEKTALPPRVFLTGSTSKVGRAVALKLALDGYDVVCCSSSDERFASLQWELRALRSRSGKREGTGLALQEGFPDGGAFSGYSDGGVETKDAGTLLRARRVDEGVRHRLWVIGKYDTSVRLHVPLGASAVVFAVPCPLE-GYRSDVSVVTGGILRMD-ASLCSPRRFHFLLPFDQLYACHAAAIVHYRMGWRHHEVGKVDVSRMEPTLQAAHDCGFHI 1038
Y G + W L FGYQY++ R +A I A+K G VL LGALNKAE++N+GG L+ R+VHGNTLTAA VVE + F G ++ R +F+TG++SKVG AVAL+L GY V+ SS ER L + R L + S A L + +GV WV+GK+D V ++P + AVVF+VP PLE R DV GGIL +D A L PR+F LL +++YACHAA I+ E+G+V V M +AA GF +
Sbjct: 226 YAGVHMQNWVLACFGYQYLLWPFRSFVAARIAQSASMAEKRGAKVLCLGALNKAEWMNNGGLSLLRGLHGG-ARLVHGNTLTAAAVVEAARSLF---------------------------GPPSSVRAP-------IFVTGASSKVGVAVALRLLQLGYPVLAHSSDPERLRRLGAKARQLHAAS--------------------------------ASNLQVTTALAKGVDTAYWVVGKHDPRVAQYLPRDSRAVVFSVPNPLEESLRKDVVWAPGGILHLDTARLGKPRQFSNLLAENEIYACHAAGILTAAHADWKDELGEVCVDAMSVQWEAALQMGFSL 503
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: A0A812V2L4_9DINO (CER3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V2L4_9DINO) HSP 1 Score: 152 bits (385), Expect = 2.480e-37 Identity = 122/338 (36.09%), Postives = 162/338 (47.93%), Query Frame = 1
Query: 34 WTLRAFGYQYMMSALRGRIARGIETIVREADKNGVAVLGLGALNKAEFINHGGEDLVNAFEPQKTRIVHGNTLTAAVVVENVKQAFERGIDVPGDPDXXXXXXXXXXGEVNTTGNTAAAREEKTALPPRVFLTGSTSKVGRAVALKLALDGYDVVCCSSSDERFASLQWELRALRSRSGKREGTGLALQEGFPDGGAFSGYSDGGVETKDAGTLLRARRVDEGVRHRLWVIGKYDTSVRLHVPLGASAVVFAVPCPLE-GYRSDVSVVTGGILRMDAS-LCSPRRFHFLLPFDQLYACHAAAIVHY-RMGWRHHEVGKVDVSRMEPTLQAAHDCGFHI 1038
W L FGYQY++ R +A I A++ G VL LGALNKAE++N+GG L+ R+VHGNTLTAA VVE F G V++ TA +F+TG++SKVG AVAL+L GY V+ SS ER L + + L G LA L + EGV W+IGK+D+ V ++P G+ AVVF+VP PLE R DV V GGIL +D + L PR+F LL +++YACHAA IV W+ E+G+V V M +AA + GF +
Sbjct: 628 WVLACFGYQYLLWPFRSFVAARIAQSAAMAEERGARVLSLGALNKAEWMNNGGLALLRGLGGG-VRLVHGNTLTAAAVVEAASALF---------------------GPVSSV--TAP-----------IFVTGASSKVGAAVALRLLQLGYPVLAHSSDPERLRRLDAKAQQL--------GANLATN------------------------LQVTTALVEGVHTTHWIIGKHDSRVAQYLPRGSRAVVFSVPNPLEESGRKDVVWVPGGILHLDPTRLAKPRQFSNLLADNEIYACHAAGIVTAANPDWKD-ELGEVCVDAMSTQWEAALEMGFSL 897
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: A0A6T5ZM02_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A6T5ZM02_9CHLO) HSP 1 Score: 142 bits (358), Expect = 3.750e-34 Identity = 108/339 (31.86%), Postives = 153/339 (45.13%), Query Frame = 1
Query: 28 EVWTLRAFGYQYMMSALRGRIARGIETIVREADKNGVAVLGLGALNKAEFINHGGEDLVNAFEPQ-KTRIVHGNTLTAAVVVENVKQAFERGIDVPGDPDXXXXXXXXXXGEVNTTGNTAAAREEKTALPPRVFLTGSTSKVGRAVALKLALDGYDVVCCSSSDERFASLQWELRALRSRSGKREGTGLALQEGFPDGGAFSGYSDGGVETKDAGTLLRARRVDEGVRHRLWVIGKYDTSV-RLHVPLGASAVVFAVPCPLEGYRSDVSVVTGGILRMDASLCSPRRFHFLLPFDQLYACHAAAIVHYRMGWRHHEVGKVDVSRMEPTLQAAHDCGFHI 1038
E W A+G+Q+ M + I + IE + ADK+GV VLGLGALNK E +N GG VN KTR+VHGNTLTAA +++ + P D +E +FLTGSTSK+GRA+AL +A G VV ++SDERF ++ E KD L++++ + +G + WVIGK+ + + P GA F VP P+ R D ++ R + Q++ACHA A+VH GW HHEVG +D +R++ T +AA GF +
Sbjct: 359 ETWVTPAWGFQFFMKSEFNHINKKIEQAILSADKSGVKVLGLGALNKNEALNGGGSLFVNKHGKHLKTRVVHGNTLTAAAILQKI----------PSD-----------------------CKE--------IFLTGSTSKLGRAIALYMAERGVRVVMYTTSDERFEKIRNE-----------------------------------AAKKDQHLLVQSKSLSDGAACKDWVIGKHCSERDQQSAPRGAVFHQFVVP-PIPESRKDCVYTDLPAFKLPKDAKDFRSCEMTMERGQVHACHAGALVHSLEGWDHHEVGAIDHTRIDETWEAAIKHGFSL 620
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: A0A438JWM0_VITVI (Protein ECERIFERUM 3 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JWM0_VITVI) HSP 1 Score: 132 bits (331), Expect = 2.030e-32 Identity = 99/341 (29.03%), Postives = 149/341 (43.70%), Query Frame = 1
Query: 13 KGTFNEVWTLRAFGYQYMMSALRGRIARGIETIVREADKNGVAVLGLGALNKAEFINHGGEDLVNAFEPQKTRIVHGNTLTAAVVVENVKQAFERGIDVPGDPDXXXXXXXXXXGEVNTTGNTAAAREEKTALPPRVFLTGSTSKVGRAVALKLALDGYDVVCCSSSDERFASLQWELRALRSRSGKREGTGLALQEGFPDGGAFSGYSDGGVETKDAGTLLRARRVDEGVRHRLWVIGKYDTS-VRLHVPLGASAVVFAVPCPLEGYRSDVSVVTGGILRMDASLCSPRRFHFLLPFDQLYACHAAAIVHYRMGWRHHEVGKVDVSRMEPTLQAAHDCGF 1032
+G ++ W + +G+QY +S R I + IE + EAD+ GV V+ L ALNK E +N GG VN + R+VHGNTLTAAV+++ + Q N T +VFLTG+TSK+GRA++L L + V+ + S ERF S+Q E + Q+ L++ + + W+IGK+ T + P G F VP P+ G+R D + +R+ + + + L+ACHA +VH GW HHEVG +DV +++ AA GF
Sbjct: 27 RGRLHQTWMVPRYGFQYFLSFAREGINKVIEEAILEADRMGVKVISLAALNKNESLNGGGTLYVNKHPNLRVRVVHGNTLTAAVILKEIPQ--------------------------NAT---------------QVFLTGATSKLGRAISLYLCREKICVLMLTQSSERFESIQREAP-------------IDCQK----------------------FLVQVTKYQAAQHCKTWIIGKWCTPREQSWAPPGTHFHQFVVP-PILGFRRDCTYGKLAAMRLPEDVEGLGYCEYTMERGVLHACHAGGVVHLLQGWTHHEVGAIDVDQIDVVWTAALSHGF 290
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: A0A090MA01_OSTTA (Uncharacterized domain Wax2, C-terminal n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090MA01_OSTTA) HSP 1 Score: 137 bits (344), Expect = 3.070e-32 Identity = 104/339 (30.68%), Postives = 152/339 (44.84%), Query Frame = 1
Query: 28 EVWTLRAFGYQYMMSALRGRIARGIETIVREADKNGVAVLGLGALNKAEFINHGGEDLVNAF-EPQKTRIVHGNTLTAAVVVENVKQAFERGIDVPGDPDXXXXXXXXXXGEVNTTGNTAAAREEKTALPPRVFLTGSTSKVGRAVALKLALDGYDVVCCSSSDERFASLQWELRALRSRSGKREGTGLALQEGFPDGGAFSGYSDGGVETKDAGTLLRARRVDEGVRHRLWVIGKY-DTSVRLHVPLGASAVVFAVPCPLEGYRSDVSVVTGGILRMDASLCSPRRFHFLLPFDQLYACHAAAIVHYRMGWRHHEVGKVDVSRMEPTLQAAHDCGFHI 1038
E W A+G+Q+ M + I + IE + +ADK+GV V+GLGALNK E +N GG VN + KTR+VHGNTLTAA +++ + P D +E +FLTG+TSK+GRA+AL A G VV ++S+ERF ++ E KD +++ + +G + WVIGK+ + P GA+ F VP P+ R D ++ R +P ++ACHA A+VH GW HHEVG +D +R++ T +AA GF +
Sbjct: 359 ETWVTPAWGFQFFMKSEFNHINKKIEEAILDADKSGVQVVGLGALNKNEALNGGGALFVNKHGKSLKTRVVHGNTLTAAAILQKI----------PND-----------------------CKE--------IFLTGATSKLGRAIALYCAERGVRVVMYTTSEERFEMIRAE-----------------------------------APKKDQHLFVQSTSLTDGANIKDWVIGKHCSMKDQKSAPRGATFHQFVVP-PIPESRKDCVYTDLPAFKLPRESKDFRSCEMTMPRGHVHACHAGALVHALEGWDHHEVGAIDHTRIDLTWEAALKHGFSL 620
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: A0A061R154_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R154_9CHLO) HSP 1 Score: 135 bits (341), Expect = 7.900e-32 Identity = 102/339 (30.09%), Postives = 150/339 (44.25%), Query Frame = 1
Query: 28 EVWTLRAFGYQYMMSALRGRIARGIETIVREADKNGVAVLGLGALNKAEFINHGGEDLVNAFEPQK---TRIVHGNTLTAAVVVENVKQAFERGIDVPGDPDXXXXXXXXXXGEVNTTGNTAAAREEKTALPPRVFLTGSTSKVGRAVALKLALDGYDVVCCSSSDERFASLQWELRALRSRSGKREGTGLALQEGFPDGGAFSGYSDGGVETKDAGTLLRARRVDEGVRHRLWVIGKY-DTSVRLHVPLGASAVVFAVPCPLEGYRSDVSVVTGGILRMDASLCSPRRFHFLLPFDQLYACHAAAIVHYRMGWRHHEVGKVDVSRMEPTLQAAHDCGF 1032
+ W FG+QY + R RI + I+ + +AD+ G+ V+GLGALNKAE +N GG+ +++ ++ R+VHGNTLTAA V++ + E +FLTGSTSK+GRA+AL L+ G V+ + S ERF +++ E + L+ A + EG R WV+G + + H P GA F VP P+ R+D +R+ A R + ++ACHA A+VH GW HHEVG +DVSR++ T +AA GF
Sbjct: 356 QTWCTPRFGFQYFLPFERKRINKLIKDAIVKADRLGIQVIGLGALNKAEPLNGGGKQILDEILEERELNVRVVHGNTLTAACVLKELPAGVEE-----------------------------------------IFLTGSTSKLGRAIALYLSARGTRVIMYTKSAERFEAVRSEAKPEHRH-----------------------------------LLVHATSLSEGSRCNRWVVGTLLGAADQKHAPPGAFFHQFVVP-PIREARADCKYGKLAAMRLPAKALM-RACEMTMERGCVHACHAGALVHALEGWEHHEVGAIDVSRIDDTWEAAMRHGF 616
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Match: A0A176VX58_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VX58_MARPO) HSP 1 Score: 135 bits (339), Expect = 1.480e-31 Identity = 99/338 (29.29%), Postives = 149/338 (44.08%), Query Frame = 1
Query: 22 FNEVWTLRAFGYQYMMSALRGRIARGIETIVREADKNGVAVLGLGALNKAEFINHGGEDLVNAFEPQKTRIVHGNTLTAAVVVENVKQAFERGIDVPGDPDXXXXXXXXXXGEVNTTGNTAAAREEKTALPPRVFLTGSTSKVGRAVALKLALDGYDVVCCSSSDERFASLQWELRALRSRSGKREGTGLALQEGFPDGGAFSGYSDGGVETKDAGTLLRARRVDEGVRHRLWVIGKYDT-SVRLHVPLGASAVVFAVPCPLEGYRSDVSVVTGGILRMDASLCSPRRFHFLLPFDQLYACHAAAIVHYRMGWRHHEVGKVDVSRMEPTLQAAHDCGF 1032
F + W + +G+QY ++ + RI R IE + +A G V+ LGALNK E +N GG K R+VHGNTLTAA +++ + + DV +FLTG+TSK+GRA+AL L G V+ ++S +RF S+ L E D + L++ + +G + WV+GK+ T + + P G F VP PLE R D + T +++ ++ R +P ++ACHA +VH GW HHEVG +DV R++ T +AA GF
Sbjct: 358 FTQTWVIPRYGFQYFLNFEKNRINRLIEEAILKAQDKGCKVISLGALNKNEALNGGGTLFTEKHPDLKIRVVHGNTLTAATILDKIPR------DVT-----------------------------------EIFLTGATSKLGRAIALYLCRRGVRVLMLTTSRDRFESI--------------------LHEAPVDCQRY---------------LVQVTKYQDGADCKTWVMGKWATPKQQSYAPSGTHFHQFVVP-PLEPARKDCTYGTLAAMQLPKAMRGLRTCEMTMPRGCVHACHAGGLVHALEGWTHHEVGAIDVERIDLTWKAAMKHGF 618 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12105.1617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12105.1617.1 >prot_H-elongata_contig12105.1617.1 ID=prot_H-elongata_contig12105.1617.1|Name=mRNA_H-elongata_contig12105.1617.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=346bp RFKYKGTFNEVWTLRAFGYQYMMSALRGRIARGIETIVREADKNGVAVLGback to top mRNA from alignment at H-elongata_contig12105:851..6392- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12105.1617.1 ID=mRNA_H-elongata_contig12105.1617.1|Name=mRNA_H-elongata_contig12105.1617.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5542bp|location=Sequence derived from alignment at H-elongata_contig12105:851..6392- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12105:851..6392- >mRNA_H-elongata_contig12105.1617.1 ID=mRNA_H-elongata_contig12105.1617.1|Name=mRNA_H-elongata_contig12105.1617.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2076bp|location=Sequence derived from alignment at H-elongata_contig12105:851..6392- (Himanthalia elongata Himel1 dioecious)back to top |