mRNA_H-elongata_contig121032.1616.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121032.1616.1
Unique NamemRNA_H-elongata_contig121032.1616.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121032.1616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121032contigH-elongata_contig121032:294..1394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1103
Cds size753
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929711.502328-CDS-H-elongata_contig121032:293..10461622929711.502328-CDS-H-elongata_contig121032:293..1046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121032 294..1046 +
1691679128.424483-CDS-H-elongata_contig121032:293..10461691679128.424483-CDS-H-elongata_contig121032:293..1046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121032 294..1046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929711.523394-UTR-H-elongata_contig121032:1046..13941622929711.523394-UTR-H-elongata_contig121032:1046..1394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121032 1047..1394 +
1691679128.4337585-UTR-H-elongata_contig121032:1046..13941691679128.4337585-UTR-H-elongata_contig121032:1046..1394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121032 1047..1394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121032.1616.1prot_H-elongata_contig121032.1616.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121032 294..1046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121032.1616.1

>prot_H-elongata_contig121032.1616.1 ID=prot_H-elongata_contig121032.1616.1|Name=mRNA_H-elongata_contig121032.1616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
VKSSYKLSPAAKKPAPKVKANKVVAKKEGVKKPAAKKEVVKKIAKASPKK
VIVKRAVKKKTKVIPAAETEGGAAVATEAGDAASAAPAPSPALKKAAAAA
ADARNKKAVVRKAVVKKAVVKKAVVKKAVVKKAVVKKAVVKKAVVKKAVV
KKAVAKKAVPPPAAKKKAAIGQTAPKKTAPAKKSVGTAAGAGAKKTAAPK
KDTSKPKKAMPKKKAPPPKKAEETPAPANAGEPTPKSAPEAPPVEPVAQS
*
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mRNA from alignment at H-elongata_contig121032:294..1394+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121032.1616.1 ID=mRNA_H-elongata_contig121032.1616.1|Name=mRNA_H-elongata_contig121032.1616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-elongata_contig121032:294..1394+ (Himanthalia elongata Himel1 dioecious)
GTGAAGAGCTCGTACAAGCTCAGCCCCGCGGCGAAGAAGCCAGCCCCAAA
GGTAAAGGCAAATAAGGTGGTGGCGAAAAAAGAGGGTGTTAAGAAGCCCG
CGGCGAAGAAGGAGGTGGTTAAGAAAATCGCCAAGGCCAGTCCAAAGAAG
GTTATCGTCAAGCGGGCCGTAAAGAAAAAAACGAAGGTGATCCCCGCCGC
GGAGACAGAAGGTGGAGCGGCAGTGGCGACGGAAGCTGGTGATGCCGCCA
GCGCCGCCCCTGCTCCCTCCCCGGCCTTGAAGAAGGCCGCCGCTGCCGCT
GCTGATGCGCGGAACAAGAAAGCGGTAGTAAGGAAAGCGGTGGTGAAAAA
AGCGGTGGTGAAAAAAGCGGTGGTGAAAAAAGCGGTGGTGAAAAAAGCGG
TAGTGAAAAAAGCGGTAGTGAAAAAAGCGGTAGTGAAGAAAGCGGTCGTG
AAAAAGGCGGTGGCGAAGAAAGCGGTGCCCCCCCCAGCGGCGAAGAAGAA
AGCCGCGATCGGCCAGACAGCACCAAAGAAAACAGCGCCCGCGAAGAAAT
CGGTGGGAACGGCAGCGGGTGCGGGAGCCAAGAAGACGGCGGCGCCGAAG
AAAGACACAAGCAAGCCCAAGAAAGCGATGCCAAAGAAAAAAGCGCCGCC
GCCGAAAAAAGCGGAGGAGACTCCAGCTCCGGCAAATGCCGGTGAGCCAA
CGCCCAAGTCCGCACCCGAGGCGCCGCCGGTGGAACCAGTGGCGCAGTCG
TGATTCGAATCGGGAGGCACGCAAATCCTCTCTCGTTCGCCGCCCCCCAC
CATTTACTTCTCCCGGGACTGGAACGCTTGCTTCTATGAAACCCCACCCT
GGTGGAGCGGAAAACCCTCCATTTCTTTAGCACCGCCCTGTTTATTCGGA
GCTGTGTCGAAGCACGTCTTGTGTCGCCCGCGAGAAACTCCCTACATGGG
AGGGTCCTTGCGGTTCTTTAGCTGTGAGAGGCAACGCACTCACGACGATG
TAATATTTTTTTCGTTCCTTCTTAGCGTTTGCAAGCGTTTGGGATATTTT
GGTGTGGGAAGTTATAATATTCGATGCTGGGTAGTTGGCTAGGTGGGAGG
G
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Coding sequence (CDS) from alignment at H-elongata_contig121032:294..1394+

>mRNA_H-elongata_contig121032.1616.1 ID=mRNA_H-elongata_contig121032.1616.1|Name=mRNA_H-elongata_contig121032.1616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig121032:294..1394+ (Himanthalia elongata Himel1 dioecious)
GTGAAGAGCTCGTACAAGCTCAGCCCCGCGGCGAAGAAGCCAGCCCCAAA
GGTAAAGGCAAATAAGGTGGTGGCGAAAAAAGAGGGTGTTAAGAAGCCCG
CGGCGAAGAAGGAGGTGGTTAAGAAAATCGCCAAGGCCAGTCCAAAGAAG
GTTATCGTCAAGCGGGCCGTAAAGAAAAAAACGAAGGTGATCCCCGCCGC
GGAGACAGAAGGTGGAGCGGCAGTGGCGACGGAAGCTGGTGATGCCGCCA
GCGCCGCCCCTGCTCCCTCCCCGGCCTTGAAGAAGGCCGCCGCTGCCGCT
GCTGATGCGCGGAACAAGAAAGCGGTAGTAAGGAAAGCGGTGGTGAAAAA
AGCGGTGGTGAAAAAAGCGGTGGTGAAAAAAGCGGTGGTGAAAAAAGCGG
TAGTGAAAAAAGCGGTAGTGAAAAAAGCGGTAGTGAAGAAAGCGGTCGTG
AAAAAGGCGGTGGCGAAGAAAGCGGTGCCCCCCCCAGCGGCGAAGAAGAA
AGCCGCGATCGGCCAGACAGCACCAAAGAAAACAGCGCCCGCGAAGAAAT
CGGTGGGAACGGCAGCGGGTGCGGGAGCCAAGAAGACGGCGGCGCCGAAG
AAAGACACAAGCAAGCCCAAGAAAGCGATGCCAAAGAAAAAAGCGCCGCC
GCCGAAAAAAGCGGAGGAGACTCCAGCTCCGGCAAATGCCGGTGAGCCAA
CGCCCAAGTCCGCACCCGAGGCGCCGCCGGTGGAACCAGTGGCGCAGTCG
TGAGTGAAGAGCTCGTACAAGCTCAGCCCCGCGGCGAAGAAGCCAGCCCC
AAAGGTAAAGGCAAATAAGGTGGTGGCGAAAAAAGAGGGTGTTAAGAAGC
CCGCGGCGAAGAAGGAGGTGGTTAAGAAAATCGCCAAGGCCAGTCCAAAG
AAGGTTATCGTCAAGCGGGCCGTAAAGAAAAAAACGAAGGTGATCCCCGC
CGCGGAGACAGAAGGTGGAGCGGCAGTGGCGACGGAAGCTGGTGATGCCG
CCAGCGCCGCCCCTGCTCCCTCCCCGGCCTTGAAGAAGGCCGCCGCTGCC
GCTGCTGATGCGCGGAACAAGAAAGCGGTAGTAAGGAAAGCGGTGGTGAA
AAAAGCGGTGGTGAAAAAAGCGGTGGTGAAAAAAGCGGTGGTGAAAAAAG
CGGTAGTGAAAAAAGCGGTAGTGAAAAAAGCGGTAGTGAAGAAAGCGGTC
GTGAAAAAGGCGGTGGCGAAGAAAGCGGTGCCCCCCCCAGCGGCGAAGAA
GAAAGCCGCGATCGGCCAGACAGCACCAAAGAAAACAGCGCCCGCGAAGA
AATCGGTGGGAACGGCAGCGGGTGCGGGAGCCAAGAAGACGGCGGCGCCG
AAGAAAGACACAAGCAAGCCCAAGAAAGCGATGCCAAAGAAAAAAGCGCC
GCCGCCGAAAAAAGCGGAGGAGACTCCAGCTCCGGCAAATGCCGGTGAGC
CAACGCCCAAGTCCGCACCCGAGGCGCCGCCGGTGGAACCAGTGGCGCAG
TCGTGA
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