mRNA_H-elongata_contig120986.1614.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120986.1614.1
Unique NamemRNA_H-elongata_contig120986.1614.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120986.1614.1 vs. uniprot
Match: A0A6H5K077_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K077_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 6.290e-30
Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:    2 CEKVVGELRRQIQLREDEACMLREQRAEAEELYEARAARLEGLLEEWKAKHTTLRRRFALETEGFRRDADEIGRYY 229
            CE V  EL RQIQLR+DE CMLREQRAEAEELYEARA RLE LLEEWK KH  LRRRF+LETEGFRRDAD IGR +
Sbjct:  124 CEDVESELHRQIQLRKDEVCMLREQRAEAEELYEARAVRLESLLEEWKGKHAALRRRFSLETEGFRRDADNIGRRF 199
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BLAST of mRNA_H-elongata_contig120986.1614.1 vs. uniprot
Match: D8LSK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK9_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.050e-28
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:    2 CEKVVGELRRQIQLREDEACMLREQRAEAEELYEARAARLEGLLEEWKAKHTTLRRRFALETEGFRRDADEIGRYY 229
            CE V  EL RQ+QLR+DE CMLREQRAEAEELYEARA RLE LLEEWK KH  LRRRF+LETEGFRRDAD IGR +
Sbjct:  372 CEDVESELHRQVQLRKDEVCMLREQRAEAEELYEARAVRLESLLEEWKGKHAALRRRFSLETEGFRRDADNIGRRF 447
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120986.1614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K077_9PHAE6.290e-3080.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK9_ECTSI3.050e-2878.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120986contigH-elongata_contig120986:1062..1626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size236
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929711.2320647-CDS-H-elongata_contig120986:1061..12551622929711.2320647-CDS-H-elongata_contig120986:1061..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120986 1062..1255 -
1691679128.3143477-CDS-H-elongata_contig120986:1061..12551691679128.3143477-CDS-H-elongata_contig120986:1061..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120986 1062..1255 -
1622929711.2490363-CDS-H-elongata_contig120986:1586..16261622929711.2490363-CDS-H-elongata_contig120986:1586..1626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120986 1587..1626 -
1691679128.321906-CDS-H-elongata_contig120986:1586..16261691679128.321906-CDS-H-elongata_contig120986:1586..1626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120986 1587..1626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120986.1614.1prot_H-elongata_contig120986.1614.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120986 1062..1626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120986.1614.1

>prot_H-elongata_contig120986.1614.1 ID=prot_H-elongata_contig120986.1614.1|Name=mRNA_H-elongata_contig120986.1614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
VREGRGRATSSDSAPGRRGVHATRATGGSGGALRSARGPSGGFVGGVEGQ
AHDSPAEVRARDRGFSSRCRRDREVLF*
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mRNA from alignment at H-elongata_contig120986:1062..1626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120986.1614.1 ID=mRNA_H-elongata_contig120986.1614.1|Name=mRNA_H-elongata_contig120986.1614.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=565bp|location=Sequence derived from alignment at H-elongata_contig120986:1062..1626- (Himanthalia elongata Himel1 dioecious)
GTGCGAGAAGGTCGTGGGAGAGCTACGTCGTCAGATTCAGGTGTGTTGCG
CGAGACAATCTGTAGACAGCCTTGAATAAGTAACGTCAATAACACTATGA
ATAAGGGTTTTGGGGGGCAGCTTTCGCGAAGTTAAAAAAATATAAAATGA
AAAAGACGCGCCGAGAAGTAAAAAAAGGATAAACCCCCAACTTCACACCA
TACTCTGGTGCCAGACATCCCCCCTCCCCCTTCAGCCTGGCCCGGCATTG
TTAGAGTGCGTGGTCTATGTCCGTTTCGATATATGCCTTTACCATGAGAA
CTCCCTCCCCTTTTCCCTGCCCCCTTTCTCTGATGATTGATCGCTGGTGG
TACCCGTGCGGTGCCCGCCAGCTCCGGGAAGACGAGGCGTGCATGCTACG
AGAGCAACGGGCGGAAGCGGAGGAGCTCTACGAAGCGCGCGCGGCCCGTC
TGGAGGGTTTGTTGGAGGAGTGGAAGGCCAAGCACACGACTCTCCGGCGG
AGGTTCGCGCTCGAGACCGAGGGTTTTCGTCGAGATGCCGACGAGATCGG
GAGGTACTATTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig120986:1062..1626-

>mRNA_H-elongata_contig120986.1614.1 ID=mRNA_H-elongata_contig120986.1614.1|Name=mRNA_H-elongata_contig120986.1614.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig120986:1062..1626- (Himanthalia elongata Himel1 dioecious)
GTGCGAGAAGGTCGTGGGAGAGCTACGTCGTCAGATTCAGGTGCGAGAAG
GTCGTGGGAGAGCTACGTCGTCAGATTCAGCTCCGGGAAGACGAGGCGTG
CATGCTACGAGAGCAACGGGCGGAAGCGGAGGAGCTCTACGAAGCGCGCG
CGGCCCGTCTGGAGGGTTTGTTGGAGGAGTGGAAGGCCAAGCACACGACT
CTCCGGCGGAGGTTCGCGCTCGAGACCGAGGGTTTTCGTCGAGATGCCGA
CGAGATCGGGAGGTACTATTTTGACTCCGGGAAGACGAGGCGTGCATGCT
ACGAGAGCAACGGGCGGAAGCGGAGGAGCTCTACGAAGCGCGCGCGGCCC
GTCTGGAGGGTTTGTTGGAGGAGTGGAAGGCCAAGCACACGACTCTCCGG
CGGAGGTTCGCGCTCGAGACCGAGGGTTTTCGTCGAGATGCCGACGAGAT
CGGGAGGTACTATTTTGA
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