mRNA_H-elongata_contig120969.1611.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120969.1611.1
Unique NamemRNA_H-elongata_contig120969.1611.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: D7G0M2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M2_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 5.520e-42
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    4 MRDAYAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFGEPPRQ 249
            M++A+++QLAN DYQRF++KVPRVEGVWDDHDYGVNDAGK LSDH GRV+ FLDFLGVG DDPRRGG TLY+SH FGE P++
Sbjct:   79 MKEAFSKQLANEDYQRFLAKVPRVEGVWDDHDYGVNDAGKELSDHPGRVSAFLDFLGVGDDDPRRGGSTLYSSHTFGEAPKK 160          
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: A0A6H5JL56_9PHAE (PhoD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL56_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.500e-39
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    4 MRDAYAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFGEPPRQ 249
            MR+A+++QLAN DYQRF++KVPRVEGVWDDHDYGVNDAGK LSDH GRV+ FLDFLGVG DDPRRGG TLY+SH FGE P++
Sbjct:   79 MREAFSKQLANEDYQRFLAKVPRVEGVWDDHDYGVNDAGKELSDHPGRVSAFLDFLGVGDDDPRRGGSTLYSSHTFGEAPKK 160          
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: A0A7S2USL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USL7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.890e-18
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    4 MRDAYAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFGEPPRQ 249
            M++A+     N  Y  F+ +   V+GVWDDHDYGVNDAGK L+    R  +FLDFL V    PRR    LY+SH FG PP Q
Sbjct:   58 MKEAFDMIKGNTFYDEFLKEGTFVDGVWDDHDYGVNDAGKGLNHPMERQGIFLDFLDVEKGSPRRSRNGLYSSHTFGSPPTQ 139          
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: L1JL70_GUITC (PhoD domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JL70_GUITC)

HSP 1 Score: 84.0 bits (206), Expect = 1.040e-17
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    4 MRDAYAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFG 234
            ++ AY  QL   DY++F+S    VEGV+DDHDYG NDAGK+L D  G    FLDF+GV     RR  + LY+SH FG
Sbjct:   17 LKTAYRSQLEREDYRQFLSTGVIVEGVYDDHDYGKNDAGKFLRDREGSQQAFLDFIGVDRHSARRRRQGLYSSHNFG 93          
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: A0A7S4PJN4_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PJN4_GUITH)

HSP 1 Score: 84.0 bits (206), Expect = 2.710e-17
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    4 MRDAYAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFG 234
            ++ AY  QL   DY++F+S    VEGV+DDHDYG NDAGK+L D  G    FLDF+GV     RR  + LY+SH FG
Sbjct:   85 LKTAYRSQLEREDYRQFLSTGVIVEGVYDDHDYGKNDAGKFLRDREGSQQAFLDFIGVDRHSARRRRQGLYSSHNFG 161          
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: UPI001BBE1AE2 (Alkaline phosphatase family protein n=1 Tax=Algoriphagus sp. TaxID=1872435 RepID=UPI001BBE1AE2)

HSP 1 Score: 78.6 bits (192), Expect = 2.150e-15
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    4 MRDAYAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFGE 237
            +R  YA Q AN DYQ   S  P + G+WDDHDYG+ND GK+ +       +  +FLGV A  P R  E  YASH FGE
Sbjct:   78 LRAKYARQNANPDYQALKSSTPII-GIWDDHDYGINDGGKYFAQKKESRDLMFEFLGVPAGAPERSREGAYASHTFGE 154          
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: A0A7S0F2T0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F2T0_9CRYP)

HSP 1 Score: 74.3 bits (181), Expect = 2.300e-15
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   40 DYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFG 234
            DY+ F+S    VEGV+DDHDYG NDAGK+L +  G    +LDFLGV  D  RR    LY+SH FG
Sbjct:    2 DYRGFLSTGVIVEGVYDDHDYGQNDAGKYLKNRDGSQQAYLDFLGVDRDSLRRRRRGLYSSHNFG 66          
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: H3HAW9_PHYRM (PhoD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAW9_PHYRM)

HSP 1 Score: 77.4 bits (189), Expect = 9.420e-15
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   16 YAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFG 234
            Y + LAN DY  F+S+ P V G+WDDHDYG+ND GK  +       VFLDF+G   D PRR  E +Y S+  G
Sbjct:  412 YGKLLANDDYTAFVSRTP-VIGIWDDHDYGINDGGKHFTYREQSQQVFLDFMGEPEDSPRRKQEGIYTSYTIG 483          
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: A0A329SW15_9STRA (PhoD domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A329SW15_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.200e-14
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   16 YAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFG 234
            Y + +AN DY  F+++ P + G+WDDHDYG+ND GK+ ++      +FLDF+G   D PRR  E +Y S+  G
Sbjct:  109 YNKLMANEDYAAFVNRTPII-GIWDDHDYGINDGGKFYTNREESQQIFLDFIGEPKDSPRREQEGIYTSYTIG 180          
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Match: A0A7V7X4X6_9BACT (Alkaline phosphatase family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V7X4X6_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 1.530e-14
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   16 YAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVAVFLDFLGVGADDPRRGGETLYASHVFG 234
            Y  Q AN DYQ+ +  +P V G+WDDHDYG N A +  S       +FLDFL V AD PRR  E +YAS++FG
Sbjct:   84 YQLQKANPDYQKLVETIP-VIGIWDDHDYGKNGANRTYSQKRESQRLFLDFLDVPADSPRRSQEGVYASYLFG 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120969.1611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0M2_ECTSI5.520e-4276.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL56_9PHAE1.500e-3978.05PhoD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2USL7_9STRA2.890e-1850.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
L1JL70_GUITC1.040e-1751.95PhoD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S4PJN4_GUITH2.710e-1751.95Hypothetical protein (Fragment) n=2 Tax=Guillardia... [more]
UPI001BBE1AE22.150e-1548.72Alkaline phosphatase family protein n=1 Tax=Algori... [more]
A0A7S0F2T0_9CRYP2.300e-1555.38Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
H3HAW9_PHYRM9.420e-1549.32PhoD domain-containing protein n=1 Tax=Phytophthor... [more]
A0A329SW15_9STRA1.200e-1443.84PhoD domain-containing protein n=10 Tax=Phytophtho... [more]
A0A7V7X4X6_9BACT1.530e-1450.68Alkaline phosphatase family protein n=1 Tax=bacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120969contigH-elongata_contig120969:124..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1e-32
Seed eggNOG ortholog2880.D7G0M2
KEGG rclassRC00017
KEGG koko:K01113
KEGG ReactionR04620
KEGG Pathwayko00790,ko01100,ko02020,map00790,map01100,map02020
KEGG ModuleM00126
EggNOG free text desc.PhoD-like phosphatase
EggNOG OGs2QTGZ@2759,COG3540@1
EC3.1.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_001570.1
Exons1
Model size249
Cds size246
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.9415493-UTR-H-elongata_contig120969:123..1261622929710.9415493-UTR-H-elongata_contig120969:123..126Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120969 124..126 +
1691679128.2333624-UTR-H-elongata_contig120969:123..1261691679128.2333624-UTR-H-elongata_contig120969:123..126Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120969 124..126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.9739184-CDS-H-elongata_contig120969:126..3721622929710.9739184-CDS-H-elongata_contig120969:126..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120969 127..372 +
1691679128.2426689-CDS-H-elongata_contig120969:126..3721691679128.2426689-CDS-H-elongata_contig120969:126..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120969 127..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120969.1611.1prot_H-elongata_contig120969.1611.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120969 127..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120969.1611.1

>prot_H-elongata_contig120969.1611.1 ID=prot_H-elongata_contig120969.1611.1|Name=mRNA_H-elongata_contig120969.1611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MRDAYAEQLANRDYQRFISKVPRVEGVWDDHDYGVNDAGKWLSDHAGRVA
VFLDFLGVGADDPRRGGETLYASHVFGEPPRQ
back to top

mRNA from alignment at H-elongata_contig120969:124..372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120969.1611.1 ID=mRNA_H-elongata_contig120969.1611.1|Name=mRNA_H-elongata_contig120969.1611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig120969:124..372+ (Himanthalia elongata Himel1 dioecious)
CAGATGAGAGATGCCTACGCTGAGCAGCTTGCGAACCGGGACTACCAGCG CTTTATCAGCAAGGTCCCGAGGGTGGAGGGGGTCTGGGACGACCACGACT ACGGCGTGAACGATGCGGGAAAGTGGCTCTCCGACCATGCGGGAAGGGTC GCGGTCTTTCTGGACTTCTTGGGGGTTGGTGCCGACGATCCCAGGAGGGG GGGCGAGACTCTCTACGCTTCACACGTGTTCGGGGAGCCGCCGAGGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig120969:124..372+

>mRNA_H-elongata_contig120969.1611.1 ID=mRNA_H-elongata_contig120969.1611.1|Name=mRNA_H-elongata_contig120969.1611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig120969:124..372+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGATGCCTACGCTGAGCAGCTTGCGAACCGGGACTACCAGCGCTT
TATCAGCAAGGTCCCGAGGGTGGAGGGGGTCTGGGACGACCACGACTACG
GCGTGAACGATGCGGGAAAGTGGCTCTCCGACCATGCGGGAAGGGTCGCG
GTCTTTCTGGACTTCTTGGGGGTTGGTGCCGACGATCCCAGGAGGGGGGG
CGAGACTCTCTACGCTTCACACGTGTTCGGGGAGCCGCCGAGGCAGATGA
GAGATGCCTACGCTGAGCAGCTTGCGAACCGGGACTACCAGCGCTTTATC
AGCAAGGTCCCGAGGGTGGAGGGGGTCTGGGACGACCACGACTACGGCGT
GAACGATGCGGGAAAGTGGCTCTCCGACCATGCGGGAAGGGTCGCGGTCT
TTCTGGACTTCTTGGGGGTTGGTGCCGACGATCCCAGGAGGGGGGGCGAG
ACTCTCTACGCTTCACACGTGTTCGGGGAGCCGCCGAGGCAG
back to top