mRNA_H-elongata_contig12094.1610.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12094.1610.1
Unique NamemRNA_H-elongata_contig12094.1610.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12094.1610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12094contigH-elongata_contig12094:2691..3771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006690.1
Hectar predicted targeting categoryother localisation
Exons2
Model size584
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.883472-CDS-H-elongata_contig12094:2690..29901622929710.883472-CDS-H-elongata_contig12094:2690..2990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12094 2691..2990 +
1691679128.216742-CDS-H-elongata_contig12094:2690..29901691679128.216742-CDS-H-elongata_contig12094:2690..2990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12094 2691..2990 +
1622929710.8986974-CDS-H-elongata_contig12094:3487..37691622929710.8986974-CDS-H-elongata_contig12094:3487..3769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12094 3488..3769 +
1691679128.2249224-CDS-H-elongata_contig12094:3487..37691691679128.2249224-CDS-H-elongata_contig12094:3487..3769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12094 3488..3769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12094.1610.1prot_H-elongata_contig12094.1610.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12094 2691..3769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12094.1610.1

>prot_H-elongata_contig12094.1610.1 ID=prot_H-elongata_contig12094.1610.1|Name=mRNA_H-elongata_contig12094.1610.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
VKSKRGKYYKAPRADGSWSWGHRDLAQSPSRHTPRRSGVSERRQRSHRTH
SDRSIFSPDYYGKGRSMFSPARAKSVGARSRGRWDSSSSPSQNGPHRMDM
RVEANDHDVSWEELRSAHQMSSSSRGSHAPKPGFARYSEVVGVSPASGSF
EHNSTTRTGPARQHRGIPYRVTTPGGGELFIGVSPEPERGTNYS
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mRNA from alignment at H-elongata_contig12094:2691..3771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12094.1610.1 ID=mRNA_H-elongata_contig12094.1610.1|Name=mRNA_H-elongata_contig12094.1610.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-elongata_contig12094:2691..3771+ (Himanthalia elongata Himel1 dioecious)
GTAAAGAGTAAGCGTGGAAAGTACTACAAGGCACCCCGGGCCGACGGGTC
TTGGTCTTGGGGACATAGGGACCTGGCTCAATCCCCTTCGAGGCACACCC
CTCGCCGCAGCGGCGTGTCCGAGAGGAGGCAGCGCTCGCACCGCACTCAC
TCCGATCGCTCCATCTTCAGCCCGGACTACTATGGAAAGGGACGCTCCAT
GTTCTCCCCGGCGCGCGCGAAGAGCGTCGGGGCCAGGAGCAGGGGACGTT
GGGACTCGTCGAGTTCGCCTAGCCAGAATGGTCCGCACCGGATGGACATG
GTGAGGATAGTAGGACAGTAGCGGTGGCGCTTGTAGAAAACGAAGTCGGC
ACGTGTTGTTGGTGCGTTGTTCGGCGGGCATTTCGCGGCCCAAGCGAAAT
GTGGTTTTTCTGCTCGAGTACCCGTTCTTTTTCTTTTTTTGTTTGACGAG
TTTGGTTTTTTAGAGGGTTCCTATTTTTTCGACGGCGTTCTGAAGGGTAC
GACGATCGGCGCACCTCCAGCGACGTGATGCCCTCCCCACCCTATTATCT
AACAGCGAATGTATTGCAAAAATTGAATACTCTCCCGCCTCCTCCACTTA
TCTTGAGAGTCTTAACGGGGGTACACAAGCAATCAAGGAGATGGATTGCG
TCGGCCTGTGATGCCGGGTGGGAGCACTGCCGTTATTTTGCGATACATCC
CTCCCCTCTGCCGTTATTTACCACACATTTGTCCCATCTGTCCCCTCTGT
CCTTGTCCCCTGTCGGTGTTGGTGTCGGAATTGATTACGTCCTGTAGAGA
GTGGAAGCAAACGACCACGACGTAAGCTGGGAGGAACTCCGGTCCGCTCA
CCAGATGAGCAGCAGCAGCAGGGGCTCCCACGCCCCCAAGCCTGGCTTCG
CGAGGTACAGCGAGGTCGTTGGCGTGAGCCCCGCCAGCGGAAGCTTCGAA
CACAACTCGACGACGAGGACCGGCCCCGCCCGTCAGCATCGTGGTATCCC
CTACCGCGTCACCACTCCCGGTGGCGGTGAGTTGTTCATTGGAGTATCCC
CCGAGCCGGAGAGAGGCACAAATTATTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig12094:2691..3771+

>mRNA_H-elongata_contig12094.1610.1 ID=mRNA_H-elongata_contig12094.1610.1|Name=mRNA_H-elongata_contig12094.1610.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig12094:2691..3771+ (Himanthalia elongata Himel1 dioecious)
GTAAAGAGTAAGCGTGGAAAGTACTACAAGGCACCCCGGGCCGACGGGTC
TTGGTCTTGGGGACATAGGGACCTGGCTCAATCCCCTTCGAGGCACACCC
CTCGCCGCAGCGGCGTGTCCGAGAGGAGGCAGCGCTCGCACCGCACTCAC
TCCGATCGCTCCATCTTCAGCCCGGACTACTATGGAAAGGGACGCTCCAT
GTTCTCCCCGGCGCGCGCGAAGAGCGTCGGGGCCAGGAGCAGGGGACGTT
GGGACTCGTCGAGTTCGCCTAGCCAGAATGGTCCGCACCGGATGGACATG
GTAAAGAGTAAGCGTGGAAAGTACTACAAGGCACCCCGGGCCGACGGGTC
TTGGTCTTGGGGACATAGGGACCTGGCTCAATCCCCTTCGAGGCACACCC
CTCGCCGCAGCGGCGTGTCCGAGAGGAGGCAGCGCTCGCACCGCACTCAC
TCCGATCGCTCCATCTTCAGCCCGGACTACTATGGAAAGGGACGCTCCAT
GTTCTCCCCGGCGCGCGCGAAGAGCGTCGGGGCCAGGAGCAGGGGACGTT
GGGACTCGTCGAGTTCGCCTAGCCAGAATGGTCCGCACCGGATGGACATG
AGAGTGGAAGCAAACGACCACGACGTAAGCTGGGAGGAACTCCGGTCCGC
TCACCAGATGAGCAGCAGCAGCAGGGGCTCCCACGCCCCCAAGCCTGGCT
TCGCGAGGTACAGCGAGGTCGTTGGCGTGAGCCCCGCCAGCGGAAGCTTC
GAACACAACTCGACGACGAGGACCGGCCCCGCCCGTCAGCATCGTGGTAT
CCCCTACCGCGTCACCACTCCCGGTGGCGGTGAGTTGTTCATTGGAGTAT
CCCCCGAGCCGGAGAGAGGCACAAATTATTCGAGAGTGGAAGCAAACGAC
CACGACGTAAGCTGGGAGGAACTCCGGTCCGCTCACCAGATGAGCAGCAG
CAGCAGGGGCTCCCACGCCCCCAAGCCTGGCTTCGCGAGGTACAGCGAGG
TCGTTGGCGTGAGCCCCGCCAGCGGAAGCTTCGAACACAACTCGACGACG
AGGACCGGCCCCGCCCGTCAGCATCGTGGTATCCCCTACCGCGTCACCAC
TCCCGGTGGCGGTGAGTTGTTCATTGGAGTATCCCCCGAGCCGGAGAGAG
GCACAAATTATTCG
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