mRNA_H-elongata_contig120926.1608.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120926.1608.1
Unique NamemRNA_H-elongata_contig120926.1608.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120926.1608.1 vs. uniprot
Match: D8LTJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTJ4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.660e-20
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:   13 IGLPGTHEWSTAVASDAQGNFLVAGQTDGNLFDPFAGGSGPDIWLVKLNGSTGKKIWSYQVNENGKD 213
            IG+PG+H+WS+AVA+D  GN  V GQTDGNLF P+  G G DIW+ KL G  G  +W YQV   G+D
Sbjct:   70 IGVPGSHDWSSAVATDRSGNIFVGGQTDGNLFAPWTEGDGQDIWVAKLEGEGGGLLWGYQVGSAGQD 136
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BLAST of mRNA_H-elongata_contig120926.1608.1 vs. uniprot
Match: A0A6H5KWN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.370e-18
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   13 IGLPGTHEWSTAVASDAQGNFLVAGQTDGNLFDPFAGGSGPDIWLVKLNGSTGKKIWSYQVNENGKD 213
            IG+ G+H+WS+AVA+D  GN  V GQTDGNLF P+  G G DIW+ KL G  G  +W YQV   G+D
Sbjct:   66 IGVHGSHDWSSAVATDRSGNIFVGGQTDGNLFAPWTEGDGQDIWVAKLEGEGGGLLWGYQVGSAGQD 132
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BLAST of mRNA_H-elongata_contig120926.1608.1 vs. uniprot
Match: A0A369QKM3_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Adhaeribacter pallidiroseus TaxID=2072847 RepID=A0A369QKM3_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 1.460e-5
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 1 
Query:    1 FDSTIGLPGTHEWSTAVASDAQGNFLVAGQTDGNL-FDPFAGGSGPDIWLVKLNGSTGKKIWSYQVNENGKDSL 219
            +D T+G     E ++ +A    G FLV G + GNL  D        D+WLVK+NG+TG+K W    +  G ++L
Sbjct:  643 WDKTLGSTSEDELAS-LAETPDGGFLVGGTSGGNLGADKSEDSQSSDMWLVKINGTTGQKEWDKTFSFEGPNNL 715
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120926.1608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTJ4_ECTSI2.660e-2056.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWN4_9PHAE1.370e-1855.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A369QKM3_9BACT1.460e-536.49Por_Secre_tail domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120926contigH-elongata_contig120926:331..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.7922287-CDS-H-elongata_contig120926:330..5491622929710.7922287-CDS-H-elongata_contig120926:330..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120926 331..549 -
1691679128.195865-CDS-H-elongata_contig120926:330..5491691679128.195865-CDS-H-elongata_contig120926:330..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120926 331..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120926.1608.1prot_H-elongata_contig120926.1608.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120926 331..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120926.1608.1

>prot_H-elongata_contig120926.1608.1 ID=prot_H-elongata_contig120926.1608.1|Name=mRNA_H-elongata_contig120926.1608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
FDSTIGLPGTHEWSTAVASDAQGNFLVAGQTDGNLFDPFAGGSGPDIWLV
KLNGSTGKKIWSYQVNENGKDSL
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mRNA from alignment at H-elongata_contig120926:331..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120926.1608.1 ID=mRNA_H-elongata_contig120926.1608.1|Name=mRNA_H-elongata_contig120926.1608.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig120926:331..549- (Himanthalia elongata Himel1 dioecious)
TTTGACAGCACCATTGGCCTTCCGGGAACCCACGAGTGGAGCACGGCCGT
GGCCTCCGACGCCCAAGGAAATTTTTTGGTAGCGGGTCAAACAGACGGGA
ACTTGTTCGATCCTTTCGCGGGGGGCTCGGGCCCGGACATTTGGCTGGTG
AAGCTTAACGGGAGCACTGGAAAGAAGATCTGGAGCTACCAGGTCAATGA
AAACGGGAAGGACTCTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig120926:331..549-

>mRNA_H-elongata_contig120926.1608.1 ID=mRNA_H-elongata_contig120926.1608.1|Name=mRNA_H-elongata_contig120926.1608.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig120926:331..549- (Himanthalia elongata Himel1 dioecious)
TTTGACAGCACCATTGGCCTTCCGGGAACCCACGAGTGGAGCACGGCCGT
GGCCTCCGACGCCCAAGGAAATTTTTTGGTAGCGGGTCAAACAGACGGGA
ACTTGTTCGATCCTTTCGCGGGGGGCTCGGGCCCGGACATTTGGCTGGTG
AAGCTTAACGGGAGCACTGGAAAGAAGATCTGGAGCTACCAGGTCAATGA
AAACGGGAAGGACTCTCTTTTTGACAGCACCATTGGCCTTCCGGGAACCC
ACGAGTGGAGCACGGCCGTGGCCTCCGACGCCCAAGGAAATTTTTTGGTA
GCGGGTCAAACAGACGGGAACTTGTTCGATCCTTTCGCGGGGGGCTCGGG
CCCGGACATTTGGCTGGTGAAGCTTAACGGGAGCACTGGAAAGAAGATCT
GGAGCTACCAGGTCAATGAAAACGGGAAGGACTCTCTT
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