mRNA_H-elongata_contig12092.1607.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12092.1607.1
Unique NamemRNA_H-elongata_contig12092.1607.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A6H5L3P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.490e-30
Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 RDATKAELRHHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            R+  ++ LR  LK + G  ++SVVYM  QSLFKL P FDL ++ +L+  +   ++V   GRR++W      RL +   D L  +V  +PRT +GA F SLLASADV+LHPFPFGGSKT+AD LA+G
Sbjct:  226 RERARSALRAELKNRFGIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEA-SGSNHLVFTAGRRQQWTSIFHARLNSTLGDDLMTRVFFVPRTVSGAAFSSLLASADVMLHPFPFGGSKTSADALAVG 350          
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: D7FK41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK41_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 8.300e-30
Identity = 61/126 (48.41%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 RDATKAELRHHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            R+  ++ LR  LK ++G +++SVVYM  QSLFKL P FDL ++ +L+  +   ++V   GRR++W      RL +   D +  +V  +PRT +GA F SLLASADV+LHPFPFGGSKT+AD LA+G
Sbjct:  221 RERARSVLRAELKNRIGIDQNSVVYMCAQSLFKLHPDFDLAVKGVLEA-SGSNHLVFTAGRRQQWTSIFQARLTSTLGDDVMTRVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVG 345          
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.440e-28
Identity = 65/114 (57.02%), Postives = 77/114 (67.54%), Query Frame = 1
Query:   85 QSLFKLRPAFDLVLRDILQMFTD----------------QAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            QSLFKL+P FDLVLRDIL    +                +AY+VL EGRRK W E  W RL ++  + L  +V++LPR SAG EF + LASADV+LHPFPFGGSKTAADGLALG
Sbjct:  613 QSLFKLKPDFDLVLRDILLAVNNNQNNGQMPNGEKENKNKAYLVLTEGRRKLWTEAFWRRLSSSVPEVLP-QVKILPRMSAGKEFRTFLASADVILHPFPFGGSKTAADGLALG 725          
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A835YUZ8_9STRA (Glyco_transf_41 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 5.200e-22
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    7 ATKAELRHHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAY-IVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            A K EL    K +LG E DSV++M  Q++FK  P FD  +  +L+   DQ + +VL EG+RK W +    RL       L  +V ++ RT++G+++  L+A ADVLLHPFPFGGS+T+ DG  +G
Sbjct:  637 ARKRELVLSTKAQLGMEPDSVLFMSAQAVFKYHPLFDDAIAQLLRR--DQRFHVVLQEGQRKTWTQVYMGRLSQTLGPELMRRVHLVTRTNSGSDYLRLIAGADVLLHPFPFGGSRTSTDGFQVG 759          
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A3R7Y9X5_9STRA (Glyco_transf_41 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y9X5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-20
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   28 HHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQ-TNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            HHL      E +  +YM PQS++KL P FD VL +IL+    Q ++VL+E R  +W  +L  RLQ T ++  +  +V   PR      F  LL+ ADV+LHPFPFGGSKT+AD L LG
Sbjct:   65 HHL------EDEWTIYMCPQSVYKLVPQFDRVLFEILRQ-DPQGHVVLLEARYPQWTRQLRTRLQQTINSTEMWNRVHFRPRVGGSDAFLKLLSVADVVLHPFPFGGSKTSADALLLG 175          
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A418FAZ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FAZ3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.620e-20
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   28 HHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQ-TNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            HHL      E +  +YM PQS++KL P FD VL +IL+    Q ++VL+E R  +W  +L  RLQ T ++  +  +V   PR      F  LL+ ADV+LHPFPFGGSKT+AD L LG
Sbjct:    6 HHL------EDEWTIYMCPQSVYKLVPQFDRVLFEILRQ-DPQGHVVLLEARYPQWTRQLRTRLQQTINSTEMWNRVHFRPRVGGSDAFLKLLSVADVVLHPFPFGGSKTSADALLLG 116          
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A7S3K5W7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5W7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.450e-20
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   76 MVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCL-KVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            + PQSLFKL P FD ++R IL+  T +A ++  +GRR+RW   L  RL+    D L   ++  LPR   G+ F  L+A ADV+LHPFPFGGS+T++DGLA+G
Sbjct:  651 LCPQSLFKLHPEFDTLIRKILEA-TSEAKVLFTQGRRERWTAVLEARLRNALGDQLYHERLLFLPRQPPGSAFMRLVALADVMLHPFPFGGSRTSSDGLAVG 751          
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A6S8RMR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RMR4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.320e-20
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   61 DSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            D  + + PQS+FKL P FD V+R IL+  T+ A +V   GRR+ W + L  RL+         +   +PR   GA+++ LLA ADVLLHPFPFGGS+T+ADGLALG
Sbjct:  690 DWPLLLCPQSVFKLHPHFDTVVRRILEATTN-ARVVFTAGRRQAWTKVLVSRLEKTLGPYKS-RCAFVPRQMPGADYYKLLAVADVLLHPFPFGGSRTSADGLALG 793          
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A7S3ZLD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLD0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.460e-20
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   61 DSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            D  + + PQS+FKL P FD V+R IL+  T+ A +V   GRR+ W + L  RL+         +   +PR   GA+++ LLA ADVLLHPFPFGGS+T+ADGLALG
Sbjct:  690 DWPLLLCPQSVFKLHPHFDTVVRRILEATTN-ARVVFTAGRRQAWTKVLVSRLEKTLGPYKS-RCAFVPRQMPGADYYKLLAVADVLLHPFPFGGSRTSADGLALG 793          
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A397D0C6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D0C6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.310e-19
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   28 HHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQ-TNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
            HHL      E +  +YM PQS++KL P FD VL +IL+    Q ++VL+E R  +W  +L  RLQ T ++  +  +V   PR      F  LL+ ADV+LHPFPFGGSKT+AD L LG
Sbjct:  348 HHL------EDEWTIYMCPQSVYKLVPQFDRVLFEILRQ-DPQGHVVLLEARYPQWTRQLRTRLQQTINSTEMWNRVHFRPRVGGSDAFLKLLSVADVVLHPFPFGGSKTSADALLLG 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3P9_9PHAE7.490e-3049.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK41_ECTSI8.300e-3048.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUH1_ECTSI2.440e-2857.02Putative methyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A835YUZ8_9STRA5.200e-2243.20Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
A0A3R7Y9X5_9STRA1.200e-2045.76Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
A0A418FAZ3_9STRA3.620e-2045.76Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S3K5W7_9STRA5.450e-2049.02Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6S8RMR4_9STRA7.320e-2049.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZLD0_9STRA7.460e-2049.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A397D0C6_9STRA1.310e-1945.76Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12092contigH-elongata_contig12092:616..2048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue3.4e-25
Seed eggNOG ortholog2880.D7FK41
EggNOG OGs2CYFD@1,2S40I@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size399
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12092.1607.1prot_H-elongata_contig12092.1607.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12092 616..2048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.706275-CDS-H-elongata_contig12092:615..7901622929710.706275-CDS-H-elongata_contig12092:615..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12092 616..790 -
1691679128.1564872-CDS-H-elongata_contig12092:615..7901691679128.1564872-CDS-H-elongata_contig12092:615..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12092 616..790 -
1622929710.722579-CDS-H-elongata_contig12092:933..10011622929710.722579-CDS-H-elongata_contig12092:933..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12092 934..1001 -
1691679128.1730957-CDS-H-elongata_contig12092:933..10011691679128.1730957-CDS-H-elongata_contig12092:933..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12092 934..1001 -
1622929710.7372043-CDS-H-elongata_contig12092:1448..15391622929710.7372043-CDS-H-elongata_contig12092:1448..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12092 1449..1539 -
1691679128.180314-CDS-H-elongata_contig12092:1448..15391691679128.180314-CDS-H-elongata_contig12092:1448..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12092 1449..1539 -
1622929710.7536848-CDS-H-elongata_contig12092:1983..20481622929710.7536848-CDS-H-elongata_contig12092:1983..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12092 1984..2048 -
1691679128.1877723-CDS-H-elongata_contig12092:1983..20481691679128.1877723-CDS-H-elongata_contig12092:1983..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12092 1984..2048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12092.1607.1

>prot_H-elongata_contig12092.1607.1 ID=prot_H-elongata_contig12092.1607.1|Name=mRNA_H-elongata_contig12092.1607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
RDATKAELRHHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFT
DQAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSL
LASADVLLHPFPFGGSKTAADGLALGEHYEIS*
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mRNA from alignment at H-elongata_contig12092:616..2048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12092.1607.1 ID=mRNA_H-elongata_contig12092.1607.1|Name=mRNA_H-elongata_contig12092.1607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1433bp|location=Sequence derived from alignment at H-elongata_contig12092:616..2048- (Himanthalia elongata Himel1 dioecious)
CGAGACGCGACAAAGGCGGAGCTTCGACATCACCTGAAGACAAAGTTAGG CTTTGAGAGAGACAGGTGCGTGTTGGTTCGTCGAAACGCTATGACTTGTA GGTTACAAATAATACCGTACAGTAGCCCTAGCTTTTTTTCGAGGAGATGA TACTTTCATTCACTGACATTTATCGCCCTTAGGAATCCATTTATCCCACT CCCACTGTTGCTGAAAAACTGTCAACAGAGATTGTTGTGGTCTACTACTA TATTTTTTATTGCCAGACCTCGCTACTTTATTGCCCTTGTAGAGACCTTT CCCGCCTGAATTGACGTCAATCGATATAACGTACGTGTTTGACATATTTT CTAGATATCGATCACTCTTCTTTCGTTCTTTTGGATGTAGTTTTATTGTT TATATACGGAGTATATTGCTCTTAGTTATACTTCTATTCCGTTTGCTCTG TCGACGCCATCCGTTGATCATTATCTGTCGATTCCCACTTACCAATCTAC ATCCATCAGCGTGGTGTACATGGTTCCCCAGAGCCTCTTCAAGCTAAGAC CGGCGTTTGATCTAGTGCTAAGAGATATTCTCCAGATGTTCACCGATCAA GTGGGTGGTGACGTTGTGATACCGAGTCCTACGTTATGCTGTGGTAAACT GTACTGTGTCTCCAATCGAATGAAGATGCCAAACATGGCTGCGGAAGAGT GACTCCTCGAATGAGCGAGGTCTATTAGTTATCGATATCAGGGGTGTTGG TATCCAAACAGACTCTTTTAGGAACATATAGAACTGCAACCCGTGATGAT ATGTTCAGGGCGCTCTACCGTAACGTTCTGAGGGGAGTTTGCGATACCCC TCTTCGAGAAACTAAGGGGTAGGTTCGTCAGCCCCACCCTTATACTACAT CGTTGAATCACTCGAAGGCTAGCTTTGCATCTGTTCCGTCCGTGATACGG TACGCGTTCCTGAATCGATATGATGCAGCAGGACAAGTCAGACAATTCAA GTCAGAAAAGCCCCGATGCACAAATGGGAAACGATGCATCGCGAAAGGCA TACATAGTTCTTATCGAGGGCCGTCGGAAGAGATGGAAGGAGGAGCTGTG GCACCGGCTGCAGACGTCCGTACCCGAGATCATTCCCCAGGTGTCGGGTA TATGAATATATGTTACATTTTACGTCGAAGTAATGTAAACTAGTTCAACT TTCAAAGTCTTTGATCTGCGCCCCCCTATCGTCGAGTGTTGGAAATACGA AGAAAAAGGAACCATGCCGACACTCTCTGTCTCAAGGTTCGGATGCTCCC GAGGACTTCGGCCGGTGCGGAATTCCACTCGCTATTGGCTTCTGCGGACG TTCTACTTCACCCTTTCCCATTCGGAGGATCCAAGACAGCCGCGGACGGT CTCGCCTTGGGTGAGCACTACGAAATTTCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig12092:616..2048-

>mRNA_H-elongata_contig12092.1607.1 ID=mRNA_H-elongata_contig12092.1607.1|Name=mRNA_H-elongata_contig12092.1607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig12092:616..2048- (Himanthalia elongata Himel1 dioecious)
CGAGACGCGACAAAGGCGGAGCTTCGACATCACCTGAAGACAAAGTTAGG
CTTTGAGAGAGACAGCGAGACGCGACAAAGGCGGAGCTTCGACATCACCT
GAAGACAAAGTTAGGCTTTGAGAGAGACAGCGTGGTGTACATGGTTCCCC
AGAGCCTCTTCAAGCTAAGACCGGCGTTTGATCTAGTGCTAAGAGATATT
CTCCAGATGTTCACCGATCAACGTGGTGTACATGGTTCCCCAGAGCCTCT
TCAAGCTAAGACCGGCGTTTGATCTAGTGCTAAGAGATATTCTCCAGATG
TTCACCGATCAAGCATACATAGTTCTTATCGAGGGCCGTCGGAAGAGATG
GAAGGAGGAGCTGTGGCACCGGCTGCAGACGCATACATAGTTCTTATCGA
GGGCCGTCGGAAGAGATGGAAGGAGGAGCTGTGGCACCGGCTGCAGACGA
ACCATGCCGACACTCTCTGTCTCAAGGTTCGGATGCTCCCGAGGACTTCG
GCCGGTGCGGAATTCCACTCGCTATTGGCTTCTGCGGACGTTCTACTTCA
CCCTTTCCCATTCGGAGGATCCAAGACAGCCGCGGACGGTCTCGCCTTGG
GTGAGCACTACGAAATTTCTTAAGAACCATGCCGACACTCTCTGTCTCAA
GGTTCGGATGCTCCCGAGGACTTCGGCCGGTGCGGAATTCCACTCGCTAT
TGGCTTCTGCGGACGTTCTACTTCACCCTTTCCCATTCGGAGGATCCAAG
ACAGCCGCGGACGGTCTCGCCTTGGGTGAGCACTACGAAATTTCTTAA
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