mRNA_H-elongata_contig120915.1606.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120915.1606.1
Unique NamemRNA_H-elongata_contig120915.1606.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: A0A6H5JTE4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.890e-29
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 MDSSHLVLRNRRYTPIIADLKCVLNIEGVPPRFLTMCFSQWIDILRMVHHMTPQIRHVRTHVEHEGRDWMISFNLIISLTSLFE 252
            + +SH VL +RRY PI ADLKCVLNIEGVP RFL  CF++WI +L MV  M PQ+R  R HVE E R+WM +FN+ ISLTSLFE
Sbjct:  636 LSASHSVLEHRRYNPIAADLKCVLNIEGVPQRFLRACFTEWIKVLLMVQKMAPQVRQQRLHVEREQREWMFAFNINISLTSLFE 719
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BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: D7G2M8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M8_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.920e-29
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 MDSSHLVLRNRRYTPIIADLKCVLNIEGVPPRFLTMCFSQWIDILRMVHHMTPQIRHVRTHVEHEGRDWMISFNLIISLTSLFE 252
            + +SH VL +RRY PI ADLKCVLNIEGVP RFL  CF++WI +L MV  M PQ+R  R HVE E R+WM +FN+ ISLTSLFE
Sbjct:  563 LSASHSVLEHRRYNPIAADLKCVLNIEGVPQRFLRACFTEWIKVLLMVQKMAPQVRQQRLHVEREQREWMFAFNINISLTSLFE 646
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BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: A0A7S3DLX1_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DLX1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.540e-16
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 MDSSHLVLRNRRYTPIIADLKCVLNIEGVPPRFLTMCFS---QWIDILRMVHHMTPQIRHVRT----HVEHEGRDWMISFNLIISLTSLFE 252
            +D +H VL +RRY+P I+DLKCVLN++G+P  F     +    WID L +   M PQ  H RT    HVE E R W+ +FN  ISL SLFE
Sbjct:   14 LDPNHFVLTHRRYSPCISDLKCVLNVKGMPRLFACKGGTFLWDWIDTLSISQQMDPQ--HWRTWNQGHVEDESRGWVGAFNASISLGSLFE 102
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BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: K8Z3N7_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3N7_NANGC)

HSP 1 Score: 73.9 bits (180), Expect = 4.980e-15
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   10 SHLVLRNRRYTPIIADLKCVLNIEGVPPRFLTMCFSQWID-ILRMVHHMTPQIRHVRTHVEHEGRDWMISFNLIISLTSLFE 252
            SH + R+RRY+P++ADLK VLNI GV   F   C   W+  +L  + +M  Q R    HV +E R+WM +FN+ ISL  + +
Sbjct:   35 SHPIFRHRRYSPVVADLKFVLNIPGVSAHFANTCMDVWLSRLLIPLQYMHAQEREADEHVTYESREWMYAFNVQISLCHVLD 116
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BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: A0A7S1FYU0_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYU0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.950e-14
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   13 HLVLRNRRYTPIIADLKCVLNIEGVPPRFLTMCFSQWIDILRMVHHMTPQ--IRHVRTHVEHEGRDWMISFNLIISLTSLFE 252
            H V+ NRRY+P+I+DLKCVLN+ G+   + + C   W+ +LR    M PQ  I     HV  E + W+ +FN  ISL+SLFE
Sbjct:  253 HPVMTNRRYSPVISDLKCVLNVVGIARVYSSKCLDPWLAVLRRAQEMDPQKWIGLKGIHVIEEPKGWIFAFNAGISLSSLFE 334
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BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: A0A7S3KZJ0_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZJ0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.990e-14
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 MDSSHLVLRNRRYTPIIADLKCVLNIEGVPPRFL----TMCFSQWIDILRMVHHMTPQI-RH-VRTHVEHEGRDWMISFNLIISLTSLFE 252
            +D  H VL +RRY+P I+DLKCVLN++G+P  F     T  F  WI  L +   M PQ  RH  + HVE E R W+ +FN  ISL SLFE
Sbjct:  690 LDPMHFVLTHRRYSPCISDLKCVLNVKGMPRLFGCKGGTFLFD-WIKTLSLAQQMDPQTWRHWTQGHVEDESRGWVGAFNASISLGSLFE 778
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BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: B7GBX5_PHATC (E3 ubiquitin-protein ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GBX5_PHATC)

HSP 1 Score: 73.6 bits (179), Expect = 2.310e-13
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    1 MDSSHLVLRNRRYTPIIADLKCVLNIEGVPPRFLTM---CFSQWIDILRMVHHMTPQI-RH-VRTHVEHEGRDWMISFNLIISLTSLFE 252
            ++ +H VL +RRY+P I+DLKCVLN++G+P  F          WI++L +   M PQ  RH    HVE E R W+ +FN  ISL S+FE
Sbjct:  637 LNPNHHVLAHRRYSPCISDLKCVLNVKGMPRLFAAKGGTFLGDWIEVLSIAQFMDPQSWRHWTFGHVEDESRGWVGAFNASISLGSIFE 725
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BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: A0A448Z6T2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6T2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.050e-13
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    1 MDSSHLVLRNRRYTPIIADLKCVLNIEGVPPRFLT---MCFSQWIDILRMVHHMTPQIRHV--RTHVEHEGRDWMISFNLIISLTSLFE 252
            +D +H V+ NRRY+P I+DLKCVLN++G+P  F +   +  + WI  L +   M  Q+     + HVE E R W+ +FN  ISL SLFE
Sbjct:  761 LDPNHFVMMNRRYSPCISDLKCVLNVKGMPRLFASKSSLFLNDWIAALGLGQMMDSQVWRCWSQGHVEVEHRGWVGAFNASISLGSLFE 849
[Close]
BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: W7U0V5_9STRA (E3 ubiquitin-protein ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.050e-13
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   10 SHLVLRNRRYTPIIADLKCVLNIEGVPPRFLTMCFSQWID-ILRMVHHMTPQIRHVRTHVEHEGRDWMISFNLIISLTSLFE 252
            SH + R+RRY+P++ADLK VLNI GV   F   C   W+  +L  + ++  Q R    HV +E R+WM +FN+ ISL  + +
Sbjct:  651 SHPIFRHRRYSPVVADLKFVLNIPGVSAHFANTCMDVWLSRLLIPLQYIHAQEREADEHVTYESREWMYAFNVQISLCHVLD 732
[Close]
BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Match: A0A1E7FD43_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD43_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-12
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    1 MDSSHLVLRNRRYTPIIADLKCVLNIEGVPPRFLTM--CF-SQWIDILRMVHHMTPQIRHVRT--HVEHEGRDWMISFNLIISLTSLFE 252
            ++ +H V+ NRRY+P I+DLKCVLN++G+P  F +   CF   WI  L +   M  Q+    T  HVE E R W+ +FN  ISL SLFE
Sbjct:  540 LNPNHFVMMNRRYSPCISDLKCVLNVKGMPRLFASKSGCFLKDWIAALGLGQMMDSQVWRDWTQGHVEVEHRGWVGAFNASISLGSLFE 628
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120915.1606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JTE4_9PHAE4.890e-2964.29E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
D7G2M8_ECTSI4.920e-2964.29E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A7S3DLX1_9STRA3.540e-1648.35E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amp... [more]
K8Z3N7_NANGC4.980e-1542.68Uncharacterized protein (Fragment) n=2 Tax=Nannoch... [more]
A0A7S1FYU0_9STRA1.950e-1445.12E3 ubiquitin-protein ligase n=1 Tax=Corethron hyst... [more]
A0A7S3KZJ0_9STRA4.990e-1448.89E3 ubiquitin-protein ligase n=1 Tax=Amphora coffei... [more]
B7GBX5_PHATC2.310e-1344.94E3 ubiquitin-protein ligase n=1 Tax=Phaeodactylum ... [more]
A0A448Z6T2_9STRA6.050e-1343.82E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzsch... [more]
W7U0V5_9STRA6.050e-1341.46E3 ubiquitin-protein ligase n=2 Tax=Monodopsidacea... [more]
A0A1E7FD43_9STRA1.090e-1246.07E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120915contigH-elongata_contig120915:625..1107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.4e-24
Seed eggNOG ortholog2880.D7G2M8
KEGG koko:K10625,ko:K11978
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.E3 ubiquitin-protein ligase
EggNOG OGsKOG1139@1,KOG1139@2759,KOG1140@1,KOG1140@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.6304743-CDS-H-elongata_contig120915:624..7321622929710.6304743-CDS-H-elongata_contig120915:624..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120915 625..732 -
1691679128.1344018-CDS-H-elongata_contig120915:624..7321691679128.1344018-CDS-H-elongata_contig120915:624..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120915 625..732 -
1622929710.644047-CDS-H-elongata_contig120915:960..11071622929710.644047-CDS-H-elongata_contig120915:960..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120915 961..1107 -
1691679128.1469514-CDS-H-elongata_contig120915:960..11071691679128.1469514-CDS-H-elongata_contig120915:960..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120915 961..1107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120915.1606.1prot_H-elongata_contig120915.1606.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120915 625..1107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120915.1606.1

>prot_H-elongata_contig120915.1606.1 ID=prot_H-elongata_contig120915.1606.1|Name=mRNA_H-elongata_contig120915.1606.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MDSSHLVLRNRRYTPIIADLKCVLNIEGVPPRFLTMCFSQWIDILRMVHH
MTPQIRHVRTHVEHEGRDWMISFNLIISLTSLFE*
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mRNA from alignment at H-elongata_contig120915:625..1107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120915.1606.1 ID=mRNA_H-elongata_contig120915.1606.1|Name=mRNA_H-elongata_contig120915.1606.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig120915:625..1107- (Himanthalia elongata Himel1 dioecious)
ATGGACAGCTCTCACCTGGTGTTGAGAAACCGTCGTTATACCCCCATCAT
CGCAGATCTGAAGTGCGTCCTAAATATCGAAGGCGTGCCGCCGCGCTTTT
TAACGATGTGCTTCAGCCAGTGGATCGATATCCTCCGCATGGTGCATGTA
AGCATCGATGGGAAACAGCGGTACATCTGTTTTTTGTTTTTGTTTTTTTG
AAGAGGCTTGCTCGCTGTGTTATATATCTTTTGATGACGAGGATGTACGT
AGGCCCCTATGTGTATGTGTCTCGTGTACCTTATGACGCGTGTCTGTGTG
AGCTCCCCTCCCCCTTCCACGGGCGTACCTTTACTCATCAAAACCCTGAT
ATTTTCCGCGCTGCTGCTGCTCCAGCATATGACGCCCCAAATCAGACACG
TGCGTACTCACGTGGAACATGAAGGCAGAGACTGGATGATCTCGTTCAAC
CTCATCATCAGCCTGACGTCACTTTTCGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig120915:625..1107-

>mRNA_H-elongata_contig120915.1606.1 ID=mRNA_H-elongata_contig120915.1606.1|Name=mRNA_H-elongata_contig120915.1606.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig120915:625..1107- (Himanthalia elongata Himel1 dioecious)
ATGGACAGCTCTCACCTGGTGTTGAGAAACCGTCGTTATACCCCCATCAT
CGCAGATCTGAAGTGCGTCCTAAATATCGAAGGCGTGCCGCCGCGCTTTT
TAACGATGTGCTTCAGCCAGTGGATCGATATCCTCCGCATGGTGCATATG
GACAGCTCTCACCTGGTGTTGAGAAACCGTCGTTATACCCCCATCATCGC
AGATCTGAAGTGCGTCCTAAATATCGAAGGCGTGCCGCCGCGCTTTTTAA
CGATGTGCTTCAGCCAGTGGATCGATATCCTCCGCATGGTGCATCATATG
ACGCCCCAAATCAGACACGTGCGTACTCACGTGGAACATGAAGGCAGAGA
CTGGATGATCTCGTTCAACCTCATCATCAGCCTGACGTCACTTTTCGAGT
GACATATGACGCCCCAAATCAGACACGTGCGTACTCACGTGGAACATGAA
GGCAGAGACTGGATGATCTCGTTCAACCTCATCATCAGCCTGACGTCACT
TTTCGAGTGA
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