mRNA_H-elongata_contig120790.1598.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120790.1598.1
Unique NamemRNA_H-elongata_contig120790.1598.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: A0A6H5J883_9PHAE (GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J883_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.780e-22
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MNGEDPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            +N + PGVLILSEFAGSAQSLSGAIRVNPWNTEELANA++QAL LSRVER+LRQ KLYR
Sbjct:  292 LNDDGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMNQALALSRVERELRQHKLYR 350
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: A0A835Z8I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.490e-21
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:   10 EDPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            + PGVLILSEFAGSAQSLSGAIRVNPWNT++LA AI QALTLSRVER+LRQ KLYR
Sbjct:  409 DGPGVLILSEFAGSAQSLSGAIRVNPWNTDQLAGAIKQALTLSRVERELRQHKLYR 464
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: F0Y2I9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2I9_AURAN)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-19
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   10 EDPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            + PG L+LSEFAGSAQSLSGAIRVNPWNTEELA AIH+ALTL+RVER+LR  KL+R
Sbjct:  451 DGPGALVLSEFAGSAQSLSGAIRVNPWNTEELARAIHEALTLTRVERELRWAKLHR 506
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: A0A5D6Y0F9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0F9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-19
Identity = 43/54 (79.63%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:   16 PGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            PGVL+LSEFAGS+QSLSGAI +NPWNTE+LA +IHQAL++SR+ER+LRQQKLYR
Sbjct:  634 PGVLVLSEFAGSSQSLSGAIVINPWNTEDLAASIHQALSMSRIERELRQQKLYR 687
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: A0A8J2S9Z6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9Z6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.310e-19
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:   10 EDPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            E PG L+LSEFAGSAQSLSGAIRVNPWNT+ELA AIH ALTL+RVER+LR  KL+R
Sbjct:  503 EGPGALVLSEFAGSAQSLSGAIRVNPWNTDELARAIHDALTLTRVERELRWAKLHR 558
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: K8YXH8_NANGC (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXH8_NANGC)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-18
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:   10 EDPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            + PGVL+LSEFAGSAQSLSGAIR+NPWNTEE+ +AI QALTLSR ER++RQ KL R
Sbjct:  451 DGPGVLVLSEFAGSAQSLSGAIRINPWNTEEVCHAIQQALTLSRAEREIRQHKLSR 506
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: M2XRH8_GALSU (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XRH8_GALSU)

HSP 1 Score: 84.0 bits (206), Expect = 1.810e-17
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   19 GVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            GVLILSEFAGSAQSLSGAIRVNPWN EELANAIH+AL++ R ER+++  KLYR
Sbjct:  563 GVLILSEFAGSAQSLSGAIRVNPWNVEELANAIHEALSMPRREREIKHWKLYR 615
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: A0A662WWT3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWT3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.820e-17
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    7 GED--PGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            GED  PGVL+LSEFAG +QSLSGAI +NPWNTE++A +IHQAL++ R ER++RQQKLYR
Sbjct:  692 GEDGGPGVLVLSEFAGCSQSLSGAIVINPWNTEDVALSIHQALSMCRTEREIRQQKLYR 750
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: A0A225VFF4_9STRA (Trehalose-phosphatase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFF4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.390e-17
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    7 GED--PGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            GED  PGVL++SEFAG +QSLSGAI VNPWNTE++A +IHQAL++ R ER++RQQKLYR
Sbjct:  651 GEDGGPGVLVVSEFAGCSQSLSGAIVVNPWNTEDVALSIHQALSMCRTEREIRQQKLYR 709
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BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Match: H3GW52_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GW52_PHYRM)

HSP 1 Score: 83.2 bits (204), Expect = 3.390e-17
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    7 GED--PGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVERKLRQQKLYR 177
            GED  PGVL++SEFAG +QSLSGAI VNPWNTE++A +IHQAL++ R ER++RQQKLYR
Sbjct:  654 GEDGGPGVLVVSEFAGCSQSLSGAIVVNPWNTEDVALSIHQALSMCRTEREIRQQKLYR 712
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120790.1598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J883_9PHAE1.780e-2284.75GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8I3_9STRA7.490e-2185.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0Y2I9_AURAN1.240e-1980.36Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A5D6Y0F9_9STRA1.240e-1979.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8J2S9Z6_9STRA2.310e-1980.36Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K8YXH8_NANGC1.100e-1876.79Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
M2XRH8_GALSU1.810e-1779.25Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
A0A662WWT3_9STRA1.820e-1771.19Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225VFF4_9STRA3.390e-1771.19Trehalose-phosphatase n=1 Tax=Phytophthora megakar... [more]
H3GW52_PHYRM3.390e-1771.19Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120790contigH-elongata_contig120790:1369..1548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog44056.XP_009034302.1
Preferred nameTPS2
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K01087,ko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009311,GO:0009312,GO:0009743,GO:0009756,GO:0009790,GO:0009791,GO:0009793,GO:0009832,GO:0009987,GO:0010033,GO:0010154,GO:0010182,GO:0016051,GO:0016311,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0022414,GO:0023052,GO:0032501,GO:0032502,GO:0033554,GO:0034637,GO:0035251,GO:0042221,GO:0042546,GO:0042578,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044464,GO:0046351,GO:0046527,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051301,GO:0051716,GO:0061458,GO:0065007,GO:0070413,GO:0070887,GO:0071310,GO:0071322,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size180
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.781623-CDS-H-elongata_contig120790:1368..15481622929709.781623-CDS-H-elongata_contig120790:1368..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120790 1369..1548 +
1691679127.800694-CDS-H-elongata_contig120790:1368..15481691679127.800694-CDS-H-elongata_contig120790:1368..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120790 1369..1548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120790.1598.1prot_H-elongata_contig120790.1598.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120790 1369..1548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120790.1598.1

>prot_H-elongata_contig120790.1598.1 ID=prot_H-elongata_contig120790.1598.1|Name=mRNA_H-elongata_contig120790.1598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MNGEDPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAIHQALTLSRVER
KLRQQKLYR*
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mRNA from alignment at H-elongata_contig120790:1369..1548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120790.1598.1 ID=mRNA_H-elongata_contig120790.1598.1|Name=mRNA_H-elongata_contig120790.1598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig120790:1369..1548+ (Himanthalia elongata Himel1 dioecious)
ATGAACGGCGAAGACCCCGGCGTGCTGATCCTGAGTGAGTTCGCTGGCAG
CGCGCAGTCCCTGAGCGGAGCCATACGAGTCAACCCCTGGAACACGGAGG
AGCTGGCGAACGCGATACATCAGGCCCTGACGCTCAGCCGCGTGGAGCGG
AAGCTGCGGCAGCAAAAGCTTTACCGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig120790:1369..1548+

>mRNA_H-elongata_contig120790.1598.1 ID=mRNA_H-elongata_contig120790.1598.1|Name=mRNA_H-elongata_contig120790.1598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig120790:1369..1548+ (Himanthalia elongata Himel1 dioecious)
ATGAACGGCGAAGACCCCGGCGTGCTGATCCTGAGTGAGTTCGCTGGCAG
CGCGCAGTCCCTGAGCGGAGCCATACGAGTCAACCCCTGGAACACGGAGG
AGCTGGCGAACGCGATACATCAGGCCCTGACGCTCAGCCGCGTGGAGCGG
AAGCTGCGGCAGCAAAAGCTTTACCGGTAAATGAACGGCGAAGACCCCGG
CGTGCTGATCCTGAGTGAGTTCGCTGGCAGCGCGCAGTCCCTGAGCGGAG
CCATACGAGTCAACCCCTGGAACACGGAGGAGCTGGCGAACGCGATACAT
CAGGCCCTGACGCTCAGCCGCGTGGAGCGGAAGCTGCGGCAGCAAAAGCT
TTACCGGTAA
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