mRNA_H-elongata_contig120763.1597.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120763.1597.1
Unique NamemRNA_H-elongata_contig120763.1597.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120763.1597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120763contigH-elongata_contig120763:992..1372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size202
Cds size150
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120763.1597.1prot_H-elongata_contig120763.1597.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120763 1042..1372 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.6745162-UTR-H-elongata_contig120763:991..10411622929709.6745162-UTR-H-elongata_contig120763:991..1041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120763 992..1041 -
1691679127.7720385-UTR-H-elongata_contig120763:991..10411691679127.7720385-UTR-H-elongata_contig120763:991..1041Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120763 992..1041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.7040024-CDS-H-elongata_contig120763:1041..11351622929709.7040024-CDS-H-elongata_contig120763:1041..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120763 1042..1135 -
1691679127.7791145-CDS-H-elongata_contig120763:1041..11351691679127.7791145-CDS-H-elongata_contig120763:1041..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120763 1042..1135 -
1622929709.7231665-CDS-H-elongata_contig120763:1316..13721622929709.7231665-CDS-H-elongata_contig120763:1316..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120763 1317..1372 -
1691679127.7863755-CDS-H-elongata_contig120763:1316..13721691679127.7863755-CDS-H-elongata_contig120763:1316..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120763 1317..1372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120763.1597.1

>prot_H-elongata_contig120763.1597.1 ID=prot_H-elongata_contig120763.1597.1|Name=mRNA_H-elongata_contig120763.1597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
ATRLLRCASPFGLWLSQRIHLPSHVFNGFGIGVSAISSKRATYVGSIPS*
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mRNA from alignment at H-elongata_contig120763:992..1372-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120763.1597.1 ID=mRNA_H-elongata_contig120763.1597.1|Name=mRNA_H-elongata_contig120763.1597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig120763:992..1372- (Himanthalia elongata Himel1 dioecious)
GCTACCCGCCTCCTACGGTGCGCCTCCCCCTTTGGCTTGTGGCTTTCGCA
ACGCATGCAGTGTGATAGACGCGGCGGCTATGCGTTTTTGAACAAGCCGA
TTGCTCCTGCACGGTTTAGCGGGTTCGGGGTCGGCGCTTCGGCTAATAAC
GTTCAAAGAGAGCGGGATGAGCCGACTAGCTACCCGCCTTCTACAGTGTC
TGGCTTCCCCTCTTGGCTTGTGCTCTTCGCAACGCAGTCATTTACCTTCG
CACGTTTTTAATGGATTCGGGATCGGCGTTTCGGCTATAAGTTCAAAGAG
AGCGACATACGTTGGGTCGATACCTAGCTAACCGCCTCTATAGTGCATAT
CTTCCCCCCTTGGCTTGTGCCTGAAGCAACG
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Coding sequence (CDS) from alignment at H-elongata_contig120763:992..1372-

>mRNA_H-elongata_contig120763.1597.1 ID=mRNA_H-elongata_contig120763.1597.1|Name=mRNA_H-elongata_contig120763.1597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig120763:992..1372- (Himanthalia elongata Himel1 dioecious)
GCTACCCGCCTCCTACGGTGCGCCTCCCCCTTTGGCTTGTGGCTTTCGCA
ACGCATGCTACCCGCCTCCTACGGTGCGCCTCCCCCTTTGGCTTGTGGCT
TTCGCAACGCATTCATTTACCTTCGCACGTTTTTAATGGATTCGGGATCG
GCGTTTCGGCTATAAGTTCAAAGAGAGCGACATACGTTGGGTCGATACCT
AGCTAATCATTTACCTTCGCACGTTTTTAATGGATTCGGGATCGGCGTTT
CGGCTATAAGTTCAAAGAGAGCGACATACGTTGGGTCGATACCTAGCTAA
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