mRNA_H-elongata_contig120732.1595.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120732.1595.1
Unique NamemRNA_H-elongata_contig120732.1595.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120732.1595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120732contigH-elongata_contig120732:78..625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size548
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120732.1595.1prot_H-elongata_contig120732.1595.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120732 205..504 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.454802-UTR-H-elongata_contig120732:77..2041622929709.454802-UTR-H-elongata_contig120732:77..204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120732 78..204 +
1691679127.6760254-UTR-H-elongata_contig120732:77..2041691679127.6760254-UTR-H-elongata_contig120732:77..204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120732 78..204 +
1622929709.4891562-UTR-H-elongata_contig120732:504..6251622929709.4891562-UTR-H-elongata_contig120732:504..625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120732 505..625 +
1691679127.6954455-UTR-H-elongata_contig120732:504..6251691679127.6954455-UTR-H-elongata_contig120732:504..625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120732 505..625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929709.4736323-CDS-H-elongata_contig120732:204..5041622929709.4736323-CDS-H-elongata_contig120732:204..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120732 205..504 +
1691679127.6843143-CDS-H-elongata_contig120732:204..5041691679127.6843143-CDS-H-elongata_contig120732:204..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120732 205..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120732.1595.1

>prot_H-elongata_contig120732.1595.1 ID=prot_H-elongata_contig120732.1595.1|Name=mRNA_H-elongata_contig120732.1595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MSARVPEYLPHCTFVRRPDPHLRISSLLALILDINNSTDSWAGGDELIRR
QPWFLLANVGFLPRLAAIALLPCRRLPLNMLELERPARCLALMLPSNVT*
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mRNA from alignment at H-elongata_contig120732:78..625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120732.1595.1 ID=mRNA_H-elongata_contig120732.1595.1|Name=mRNA_H-elongata_contig120732.1595.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=548bp|location=Sequence derived from alignment at H-elongata_contig120732:78..625+ (Himanthalia elongata Himel1 dioecious)
CCATCTCGACAGGGACGCGAAACATCATACATCGTGACTAGCGGTGGATC
ATAATGATCATCCAAAATCAAAATAGTTCAACCGCCGGGTGCGCGTTGAT
TATCAACGCATCGATCGCCCCGCTCGCATGTCTGCCAGAGTCCCAGAGTA
CCTCCCACACTGCACATTCGTCAGACGACCCGACCCACACCTGCGGATTT
CATCTCTCTTAGCGCTAATCCTCGACATCAATAATTCCACTGATTCCTGG
GCAGGGGGTGACGAGCTCATTCGTAGACAACCGTGGTTTCTCCTTGCCAA
TGTCGGATTCCTTCCACGGCTTGCAGCGATCGCGCTCCTTCCTTGTCGCC
GACTGCCCCTCAATATGTTGGAGCTAGAAAGACCCGCCAGGTGCCTCGCT
CTCATGCTACCGAGTAATGTGACTTGAGACGATGAACCAGGCACAAAAGC
TGCCGTTCGGCATGCTGTTGATAGAACAGCCATCGTCGCTACCGCGGCAC
TGGCCGGAGGGAAGGTACGTCGCATGTGATTCGGAGATGTTGGAAATG
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Coding sequence (CDS) from alignment at H-elongata_contig120732:78..625+

>mRNA_H-elongata_contig120732.1595.1 ID=mRNA_H-elongata_contig120732.1595.1|Name=mRNA_H-elongata_contig120732.1595.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig120732:78..625+ (Himanthalia elongata Himel1 dioecious)
ATGTCTGCCAGAGTCCCAGAGTACCTCCCACACTGCACATTCGTCAGACG
ACCCGACCCACACCTGCGGATTTCATCTCTCTTAGCGCTAATCCTCGACA
TCAATAATTCCACTGATTCCTGGGCAGGGGGTGACGAGCTCATTCGTAGA
CAACCGTGGTTTCTCCTTGCCAATGTCGGATTCCTTCCACGGCTTGCAGC
GATCGCGCTCCTTCCTTGTCGCCGACTGCCCCTCAATATGTTGGAGCTAG
AAAGACCCGCCAGGTGCCTCGCTCTCATGCTACCGAGTAATGTGACTTGA
ATGTCTGCCAGAGTCCCAGAGTACCTCCCACACTGCACATTCGTCAGACG
ACCCGACCCACACCTGCGGATTTCATCTCTCTTAGCGCTAATCCTCGACA
TCAATAATTCCACTGATTCCTGGGCAGGGGGTGACGAGCTCATTCGTAGA
CAACCGTGGTTTCTCCTTGCCAATGTCGGATTCCTTCCACGGCTTGCAGC
GATCGCGCTCCTTCCTTGTCGCCGACTGCCCCTCAATATGTTGGAGCTAG
AAAGACCCGCCAGGTGCCTCGCTCTCATGCTACCGAGTAATGTGACTTGA
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