mRNA_H-elongata_contig120703.1589.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A182HEZ5_AEDAL (CCHC-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HEZ5_AEDAL) HSP 1 Score: 56.6 bits (135), Expect = 1.600e-7 Identity = 29/95 (30.53%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 13 AVLGGKIGDE-RWVCDTGASQHLSNDSAHMLDFRECQTFMRTASGKRFPIEGHGD-LILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
A GG DE +W+ DTG S+H++ + + + + A G+ +G G I+ EGE+ ++K++ + YVP+LS N+L++ + D G
Sbjct: 88 ATTGGCASDEEKWIVDTGCSKHMTRSTVSLGWWNPYAEKVSVADGRTVKAKGSGTGRIIGRGLEGEIVDIKVKELLYVPELSTNVLSVSRMTDEG 182
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: UPI0016589FE9 (uncharacterized protein LOC118514016 isoform X1 n=1 Tax=Anopheles stephensi TaxID=30069 RepID=UPI0016589FE9) HSP 1 Score: 56.2 bits (134), Expect = 4.640e-7 Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 37 DERWVCDTGASQHLSND-SAHMLDFRECQTFMRTASGKRFPIEGHGDLILHFRCE-GEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
D W+ D+GAS H+ +D SA + + ++ + A G +EG GD ++ E GE+ + LR V YVP L N++++ ++A+ G
Sbjct: 269 DRSWLIDSGASSHMCSDKSAFTVMEQSLRSNVTVADGSENRVEGVGDCLIKCAVENGEIIEITLRGVLYVPTLEGNMISIGKLAEKG 355
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A8D8G7H1_CULPI (Copia protein n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8G7H1_CULPI) HSP 1 Score: 52.0 bits (123), Expect = 1.410e-5 Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 1
Query: 37 DERWVCDTGASQHLSNDSAHMLDFRECQ--TFMRTA-SGKRFPIEGHGDLILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
D RW D+GAS+H+SND +E + ++TA +G G + + GE+ + + +V ++P+L+ NLL+LR + +SG
Sbjct: 280 DSRWYLDSGASEHMSNDKEMFESLQELEDPVVIQTAKAGINLLARHKGRVNVQSTVGGEMIEIAIEDVLFIPELTLNLLSLRRLENSG 367
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A6T8CNI4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T8CNI4_9CRYP) HSP 1 Score: 51.6 bits (122), Expect = 1.920e-5 Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 46 WVCDTGASQHLSNDSAHMLDFRECQTFMRTAS-GKRFPIEGHGDL-ILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVA 282
W+ D+GAS H NDS+ + ++C + TA G+ G G+ I GE+ NL L +V YVP+ NLL++ +++
Sbjct: 624 WILDSGASCHFCNDSSKFVSMKKCNVSVSTAKKGESILAIGIGNCQITTQTANGELVNLVLHDVLYVPEARRNLLSVSKLS 704
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A445KLL8_GLYSO (Uncharacterized protein n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445KLL8_GLYSO) HSP 1 Score: 50.1 bits (118), Expect = 6.060e-5 Identity = 29/92 (31.52%), Postives = 45/92 (48.91%), Query Frame = 1
Query: 28 KIGDERWVCDTGASQHLSNDSAHMLDFRECQ----TFMRTASGKRFPIEGHGDLILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
K D W D+G S+H+ D + + DF + TF GK I G G++ G +++NV YV +L HNLL++ ++ D G
Sbjct: 171 KARDSLWYLDSGCSRHMMGDKSKLTDFMSKEGGYVTFGDNNKGK---IMGEGNI-------GNQYKTQIKNVLYVDELKHNLLSISQLCDKG 252
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A0L7KS65_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KS65_9NEOP) HSP 1 Score: 50.1 bits (118), Expect = 6.070e-5 Identity = 28/95 (29.47%), Postives = 56/95 (58.95%), Query Frame = 1
Query: 10 FAVLGGK--IGDERWVCDTGASQHLSNDSAHMLDFRECQ-TFMRTASGKRFPIEGHGDLILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVAD 285
F+ LG +G +W D+GAS+H++ D + + + + A+G++ G GD+ ++ C V + +++VAYVP+L+ NL+++++V D
Sbjct: 146 FSALGVSTCLGKNKWFIDSGASKHMTPRRDWFKDIKPLEGSTVTVANGEKIVCGGIGDISINTACN--VVD-SIKDVAYVPELTSNLISVKKVVD 237
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: UPI001929BEAC (uncharacterized protein LOC120253897 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929BEAC) HSP 1 Score: 49.7 bits (117), Expect = 7.640e-5 Identity = 32/97 (32.99%), Postives = 48/97 (49.48%), Query Frame = 1
Query: 10 FAVLGGKIGDER--WVCDTGASQHLSNDSAHMLDFRE-CQTFMRTASGKRFPIEGHGDLILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
F GG+ + W+ D+G S H+S H D E Q R GK +EG G + G++ LK V +VPQL+HNLL++ ++ +G
Sbjct: 169 FMASGGRCVEASSVWLIDSGCSNHMSGIREHFHDLDENVQQVARLGDGKTIKVEGVGTVEFQTN-NGKIKYLK--EVQFVPQLAHNLLSVSQLILTG 262
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Match: A0A8H8NUS4_9AGAM (Integrase core domain protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NUS4_9AGAM) HSP 1 Score: 49.7 bits (117), Expect = 9.360e-5 Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 1
Query: 19 LGGKIGDERWVCDTGASQHLSNDSAHMLDFRECQTFMRTASGKRFPIEGHGD---LILHFRCEGEVANLKLRNVAYVPQLSHNLLTLREVADSG 291
L GK D W+ D+G + H++ D ++ + ++ +GK PI G G L L+ + E ++L NVA+VP L NL++L V D G
Sbjct: 340 LIGKTPDT-WIADSGTTTHIAIDRNAFSNYTKSSGYVAGVTGKE-PIMGRGTVELLCLNNTEKNEYTKIRLTNVAHVPSLPANLISLSLVTDKG 431 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120703.1589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig120703.1589.1 >prot_H-elongata_contig120703.1589.1 ID=prot_H-elongata_contig120703.1589.1|Name=mRNA_H-elongata_contig120703.1589.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp FERFAVLGGKIGDERWVCDTGASQHLSNDSAHMLDFRECQTFMRTASGKRback to top mRNA from alignment at H-elongata_contig120703:256..546- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig120703.1589.1 ID=mRNA_H-elongata_contig120703.1589.1|Name=mRNA_H-elongata_contig120703.1589.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig120703:256..546- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig120703:256..546- >mRNA_H-elongata_contig120703.1589.1 ID=mRNA_H-elongata_contig120703.1589.1|Name=mRNA_H-elongata_contig120703.1589.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig120703:256..546- (Himanthalia elongata Himel1 dioecious)back to top |