mRNA_H-elongata_contig120680.1586.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120680.1586.1
Unique NamemRNA_H-elongata_contig120680.1586.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: A0A6H5KVQ9_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVQ9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.040e-44
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 EQDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQADIDWLPVGLKTVDLR 264
            +QDCFMSSVDVHTHCGYQLMLPEAVAVVYAP DNKKR+GVFRLT+PEGMKLIQ+C LKGFH HP+ + IYEQAD+ W PV +  VDLR
Sbjct:  320 KQDCFMSSVDVHTHCGYQLMLPEAVAVVYAPGDNKKRVGVFRLTQPEGMKLIQECKLKGFHQHPDDITIYEQADLTWAPVRMTIVDLR 407
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: A0A7S3XHL2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XHL2_HETAK)

HSP 1 Score: 121 bits (303), Expect = 1.590e-31
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    4 QDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQADIDWLPVGLKTVDLR 264
            Q CFMSSVD+HTH  YQ +LPEAVAVV AP DN KR+GVFRLTEP G++ +  CTL GFH HP  V+IY+  +IDW     +TVD+R
Sbjct:  231 QTCFMSSVDLHTHAPYQALLPEAVAVVVAPTDNAKRVGVFRLTEPAGLQTVMACTLTGFHQHPADVEIYQDVNIDWKNRPFETVDMR 317
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: A0A836C7U4_9STRA (MPN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.670e-31
Identity = 56/88 (63.64%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:    4 QDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQADIDW-LPVGLKTVDLR 264
            QDCFMSSVD+HTH GYQ+MLPEAVAVV AP D  KR+GVFRL  P G++LI  C LKGFH HP  V IY  A ++W     L  VDLR
Sbjct:   90 QDCFMSSVDLHTHAGYQIMLPEAVAVVIAPTDAAKRVGVFRLEAPHGLRLILDCRLKGFHPHPTDVTIYGDARVEWDARAPLSVVDLR 177
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: W2H2M5_PHYPR (MPN domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2H2M5_PHYPR)

HSP 1 Score: 114 bits (285), Expect = 9.000e-29
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 EQDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQA-DIDWLP-VGLKTVDLR 264
            +QDCF+SSVDVHT CG+Q +LPEAVA+V AP+D +K +GVFRLTEP G++LIQ C L GFH HP  V+IY  A +  W+  V  + +D+R
Sbjct:  244 KQDCFLSSVDVHTQCGFQSILPEAVAIVVAPSDPRKNVGVFRLTEPSGLQLIQNCNLTGFHTHPSHVEIYSDAFECKWMEQVTTQLIDMR 333
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: W2H469_PHYPR (MPN domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2H469_PHYPR)

HSP 1 Score: 114 bits (285), Expect = 3.190e-28
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 EQDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQA-DIDWLP-VGLKTVDLR 264
            +QDCF+SSVDVHT CG+Q +LPEAVA+V AP+D +K +GVFRLTEP G++LIQ C L GFH HP  V+IY  A +  W+  V  + +D+R
Sbjct:  332 KQDCFLSSVDVHTQCGFQSILPEAVAIVVAPSDPRKNVGVFRLTEPSGLQLIQNCNLTGFHTHPSHVEIYSDAFECKWMEQVTTQLIDMR 421
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: G4YUY3_PHYSP (MPN domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=G4YUY3_PHYSP)

HSP 1 Score: 113 bits (282), Expect = 8.710e-28
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 EQDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQA-DIDWLP-VGLKTVDLR 264
            +QDCF+SSVDVHT CG+Q +LPEAVA+V AP+D  K +GVFRLTEP G++LIQ C L GFH HP  ++IY  A +  W+  +  + +D+R
Sbjct:  333 KQDCFLSSVDVHTQCGFQSILPEAVAIVVAPSDPHKNVGVFRLTEPSGLQLIQNCNLTGFHTHPSQIEIYSDAFECKWMEQISAQLIDMR 422
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: A0A0P1AFE4_PLAHL (Metalloprotease family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFE4_PLAHL)

HSP 1 Score: 112 bits (279), Expect = 1.310e-27
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 EQDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQA-DIDWLP-VGLKTVDLR 264
            +Q CF+SSVDVHT CG+Q +LPEAVA+V AP+D  + +GVFRLTEP G++LIQ C + GFH HP  +KIY  A + +W+  V  + VD+R
Sbjct:  286 KQACFLSSVDVHTQCGFQSILPEAVAIVVAPSDPNRNVGVFRLTEPSGLQLIQNCNMTGFHAHPSDIKIYSDAFECNWMEQVSAQLVDMR 375
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: A0A6A4ALY8_9STRA (MPN domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4ALY8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.710e-27
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 EQDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQA-DIDWLPVGL-KTVDLR 264
            +QDCF+SSVDVHT CG+Q +LPEAVA+V AP+D +K +GVFRLTEP G++LIQ C L GFH HP  ++IY  A +  W+     + +D+R
Sbjct:  334 KQDCFLSSVDVHTQCGFQSILPEAVAIVVAPSDPRKNVGVFRLTEPSGLQLIQNCNLTGFHTHPSQIEIYSNAFECKWMEQATAQLIDMR 423
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: A0A225WWV4_9STRA (Metalloprotease n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WWV4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.040e-27
Identity = 48/79 (60.76%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 EQDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQA-DIDWL 234
            +QDCF+SSVDVHT CG+Q +LPEAVA+V AP+D +K +GVFRLTEP G++LIQ C L GFH HP  ++IY  A +  W+
Sbjct:  343 KQDCFLSSVDVHTQCGFQSILPEAVAIVVAPSDPRKNVGVFRLTEPSGLQLIQNCNLTGFHTHPSQIEIYSDAFECKWM 421
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BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Match: A0A5D6Y791_9STRA (MPN domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y791_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.010e-27
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    4 QDCFMSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKCTLKGFHVHPEGVKIYEQA-DIDW---LPVGLKTVDLR 264
            Q CF+SSVD+HT CG+Q +LPEA+A+V AP D ++ +GVFRLTEP G++LIQ C L GFH HP  V+IY  A D DW    P  L  VD+R
Sbjct:  344 QTCFLSSVDIHTQCGFQSILPEAIAIVVAPTDRQRNVGVFRLTEPNGLQLIQNCNLTGFHEHPSNVQIYSDALDCDWGRHAPTAL--VDMR 432
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120680.1586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVQ9_9PHAE1.040e-4479.55MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3XHL2_HETAK1.590e-3162.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836C7U4_9STRA2.670e-3163.64MPN domain-containing protein n=1 Tax=Tribonema mi... [more]
W2H2M5_PHYPR9.000e-2957.78MPN domain-containing protein n=6 Tax=Phytophthora... [more]
W2H469_PHYPR3.190e-2857.78MPN domain-containing protein n=9 Tax=Phytophthora... [more]
G4YUY3_PHYSP8.710e-2855.56MPN domain-containing protein n=21 Tax=Phytophthor... [more]
A0A0P1AFE4_PLAHL1.310e-2755.56Metalloprotease family n=1 Tax=Plasmopara halstedi... [more]
A0A6A4ALY8_9STRA1.710e-2755.56MPN domain-containing protein n=4 Tax=Phytophthora... [more]
A0A225WWV4_9STRA5.040e-2760.76Metalloprotease n=2 Tax=Phytophthora TaxID=4783 Re... [more]
A0A5D6Y791_9STRA7.010e-2757.14MPN domain-containing protein n=1 Tax=Pythium bras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120680contigH-elongata_contig120680:347..1166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue8.1e-33
Seed eggNOG ortholog2880.D8LQD0
Preferred nameSTAMBP
KEGG koko:K11866,ko:K11867,ko:K12655
KEGG Pathwayko04144,ko04622,map04144,map04622
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0007034,GO:0007049,GO:0007154,GO:0007165,GO:0007259,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008270,GO:0008284,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0014066,GO:0014067,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019904,GO:0019941,GO:0022402,GO:0023051,GO:0023052,GO:0023057,GO:0030163,GO:0031410,GO:0031593,GO:0031974,GO:0031981,GO:0031982,GO:0032153,GO:0032154,GO:0032155,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0035871,GO:0036211,GO:0036459,GO:0042127,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043412,GO:0043523,GO:0043524,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046578,GO:0046580,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051179,GO:0051234,GO:0051301,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060548,GO:0061578,GO:0061640,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097696,GO:0097708,GO:0098590,GO:0101005,GO:0120113,GO:0140030,GO:0140096,GO:1901214,GO:1901215,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902532,GO:1903047
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1310@1,KOG2880@2759
EC3.4.19.12
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMPN/PAD-1 domain-containing protein
Ec32 orthologEc-10_005170.1
Exons2
Model size267
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120680.1586.1prot_H-elongata_contig120680.1586.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120680 362..1166 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.348862-UTR-H-elongata_contig120680:346..3611622929708.348862-UTR-H-elongata_contig120680:346..361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120680 347..361 +
1691679127.2921908-UTR-H-elongata_contig120680:346..3611691679127.2921908-UTR-H-elongata_contig120680:346..361Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120680 347..361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.3648393-CDS-H-elongata_contig120680:361..4561622929708.3648393-CDS-H-elongata_contig120680:361..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120680 362..456 +
1691679127.3025236-CDS-H-elongata_contig120680:361..4561691679127.3025236-CDS-H-elongata_contig120680:361..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120680 362..456 +
1622929708.3783946-CDS-H-elongata_contig120680:1009..11661622929708.3783946-CDS-H-elongata_contig120680:1009..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120680 1010..1166 +
1691679127.3110793-CDS-H-elongata_contig120680:1009..11661691679127.3110793-CDS-H-elongata_contig120680:1009..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120680 1010..1166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120680.1586.1

>prot_H-elongata_contig120680.1586.1 ID=prot_H-elongata_contig120680.1586.1|Name=mRNA_H-elongata_contig120680.1586.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MSSVDVHTHCGYQLMLPEAVAVVYAPNDNKKRIGVFRLTEPEGMKLIQKC
TLKGFHVHPEGVKIYEQADIDWLPVGLKTVDLR*
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mRNA from alignment at H-elongata_contig120680:347..1166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120680.1586.1 ID=mRNA_H-elongata_contig120680.1586.1|Name=mRNA_H-elongata_contig120680.1586.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=820bp|location=Sequence derived from alignment at H-elongata_contig120680:347..1166+ (Himanthalia elongata Himel1 dioecious)
GAGCAGGACTGCTTCATGTCGAGCGTGGACGTCCACACGCACTGCGGCTA
CCAACTCATGCTTCCCGAGGCGGTTGCGGTGGTGTACGCCCCTAACGATA
ACAAAAAAAGGTTCGTGTAGGTTCAATAGTCTCTGCCAGCGCGCGAAAAA
AAAACGTTTCGCCATTTTACGTGTTTGCCGAAGGGGCTCTACCGCCGAGC
GCGTTGAGGTTTTAATGAAGAGGCGAAGGATAGGCGGTCTGGCTGCTTGC
GTTTCCCGCCTAAATCTGAGAGGAGGAATCTCCCGCGAGCGAGGGGATGC
TCGCGTTTTCGTTTTTTTTGTTTTGTTTTTTGTCAAACGAGAACCACGAG
AGTCTCGTGGTGCACACGCCGCGAAGATCTTGTCTCTCGGTGATAATTTT
TTTTTCACCCGCCCAGGAGTGGGGGATTCGTTTATGTAACCGTCATAGTA
TGAAGAACGTGGACATTCTTCGCGGGTGTGGGTTTCCATTGTCCCCGGAA
GCTACGTCGCTAAAGTGAAAACACTATCGATCCCCCCCCCCGCCCCCGAG
GACGCGTGGTCAATGGCCTTGCAGCAAAGGCATGCAAAAATTTAGTACGC
CCCCCCCTCGCCTGTGTGTCCCCATATGTGCCTCAAACCTTCGAACGCCA
TTCCTTCTACCAGAATCGGCGTATTCCGCCTCACGGAACCGGAGGGCATG
AAGCTCATTCAGAAGTGCACGTTAAAGGGTTTCCACGTCCACCCCGAGGG
CGTCAAGATCTATGAACAGGCGGATATTGATTGGTTGCCGGTCGGCTTGA
AGACCGTAGACCTTAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig120680:347..1166+

>mRNA_H-elongata_contig120680.1586.1 ID=mRNA_H-elongata_contig120680.1586.1|Name=mRNA_H-elongata_contig120680.1586.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig120680:347..1166+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAGCGTGGACGTCCACACGCACTGCGGCTACCAACTCATGCTTCC
CGAGGCGGTTGCGGTGGTGTACGCCCCTAACGATAACAAAAAAAGATGTC
GAGCGTGGACGTCCACACGCACTGCGGCTACCAACTCATGCTTCCCGAGG
CGGTTGCGGTGGTGTACGCCCCTAACGATAACAAAAAAAGAATCGGCGTA
TTCCGCCTCACGGAACCGGAGGGCATGAAGCTCATTCAGAAGTGCACGTT
AAAGGGTTTCCACGTCCACCCCGAGGGCGTCAAGATCTATGAACAGGCGG
ATATTGATTGGTTGCCGGTCGGCTTGAAGACCGTAGACCTTAGATGAAAT
CGGCGTATTCCGCCTCACGGAACCGGAGGGCATGAAGCTCATTCAGAAGT
GCACGTTAAAGGGTTTCCACGTCCACCCCGAGGGCGTCAAGATCTATGAA
CAGGCGGATATTGATTGGTTGCCGGTCGGCTTGAAGACCGTAGACCTTAG
ATGA
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