mRNA_H-elongata_contig120655.1584.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120655.1584.1
Unique NamemRNA_H-elongata_contig120655.1584.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 2.250e-62
Identity = 124/221 (56.11%), Postives = 147/221 (66.52%), Query Frame = 1
Query:    1 ILEDKEGKRRQPQGFKLRQVCATVLDPRSKHLYGILPEEQPVVWRVVASEAVEMALRNKSGDTVVVPVTMLT---IETSPVP-AAGQGGPKRPRLNPFKATAAVHAVSSSTAGD--STDEIREQMFTIVDMQVSAFKTAPGIRVSEV----VGGKTVYNDPLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRLLPENVEVLVYL 633
            ILE +EGKRRQPQGFK +QV AT LDPR+KHLYGI   E   VWR VAS AV++AL   +GD             ++T P P   GQG  KRPR++ F+A AA             S DE REQ+  IVDM+VSAFK APGIRV ++     G K V+N+PL  W  K+ E+P+LA L R VLAIP+SQAQSER FSTAGL VTPTR+RLL ENVE+LVYL
Sbjct:  323 ILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYL 543          
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 5.460e-53
Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 1
Query:    1 ILEDKEGKRRQPQGFKLRQVCATVLDPRSKHLYGILPEEQPVVWRVVASEAVEMALRNKSGDTVVVPVTMLTIE---TSPVPAAGQGGPKRPRLNPFKATAAVHA--VSSSTAGDSTDEIREQMFTIVDMQVSAFKTAPGIRVSEV-VGGKTVYNDPLGWWPTKEREFPILATLTRCVLAIPASQAQSER 552
            ILE +EGKRRQPQGFKL+QVCAT +DPR+KHLYGI   E   VWR VA++AV++A    S D      +    +   T PV   GQG PKR RL+ F+A AA HA   +SS  G + DE REQ+ ++VD++V++F+T PGI +      GK VYNDPL WW T++ EFP LA L R VLAIP+SQA SER
Sbjct:  359 ILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSER 548          
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.150e-31
Identity = 88/239 (36.82%), Postives = 120/239 (50.21%), Query Frame = 1
Query:    1 ILEDKEGKRRQPQGFKLRQVCATVLDPRSKHLYGILPEEQPVVWRVVASEAVEMALRNKSGDT---------------------------VVVPVTMLTIETSPVPAAGQGGPKRPRLNPFKATAAVHAVSSSTAGDSTDEIREQMFTIVDMQVSAFKTAPGIRV-SEVVGGKTVYNDPLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRLLPENVEVLVYL 633
            IL  KEG+RRQP GFK  QV AT LDPR+K LYG+  +E+  VW++V  EAV++A+  ++ +                                            A   GG + P+L+    ++ V  ++SS                V ++++AFK + GI++  E   G  VY DPL WW  +  +FP LA L R VLAIPA+QA+SER FS AG IVT  RN L P  VE+LV L
Sbjct:   61 ILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFVRLITSS----------------VRVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLL 283          
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.570e-23
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  298 VHAVSSSTAGDSTDEIREQMFTIVDMQVSAFKTAPGIRVSEVVGGKTVYNDPLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRLLPENVEVLVYL 633
             H     +A  S+  +R QM +I+  +V AFK  PG+ VS    G+ V   PL WW  K RE+P LA+L R VL IPA QAQSER FS+AGL+VT TR R+ PENV ++V+L
Sbjct:  429 AHGDKQQSANASSSPLRRQMESIISREVDAFKITPGLAVSWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFL 540          
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: A0A8B8G1F8_9HEMI (zinc finger BED domain-containing protein 1-like n=4 Tax=Aphididae TaxID=27482 RepID=A0A8B8G1F8_9HEMI)

HSP 1 Score: 77.4 bits (189), Expect = 1.490e-14
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  448 DPLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRLLPENVEVLVYL 633
            +PL WW T+E ++P +AT+ +  LAIP++ A SER FSTAG IVTP R+ LLPENV++LV+L
Sbjct:   76 NPLEWWRTREEKYPAIATIAKKYLAIPSTSASSERCFSTAGNIVTPKRSCLLPENVDMLVFL 137          
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: UPI0005F55F89 (zinc finger BED domain-containing protein 1-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F55F89)

HSP 1 Score: 77.0 bits (188), Expect = 2.240e-13
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  367 VDMQVSAFKTAPGIRVSEVVGGKTVYNDPLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRLLPENVEVLVYL 633
            V+ Q  A+ + P +RV           D L WW T+  +FP LA L R  L+IPA+ A +ERTFSTAG IVTP RN L PENV +LV+L
Sbjct:  189 VESQFQAYLSEPQLRVDL---------DYLEWWKTRADKFPALAILARKYLSIPATSASAERTFSTAGNIVTPKRNCLSPENVNMLVFL 268          
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: A0A2S2P4C5_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2P4C5_SCHGA)

HSP 1 Score: 71.6 bits (174), Expect = 8.750e-13
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  448 DPLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRLLPENVEVLVYL 633
            DP  WW + E+++P++A + +  L+IPA+   SER FSTAG +VTP RN L PENV +LV+L
Sbjct:   36 DPFEWWKSHEKKYPLVAKVAKKFLSIPATSVSSERCFSTAGNVVTPKRNCLAPENVNMLVFL 97          
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: A0A151I7P1_9HYME (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7P1_9HYME)

HSP 1 Score: 69.3 bits (168), Expect = 3.670e-12
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  448 DPLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRLLPENVEVLVYL 633
            D + WW      FPILA + R  LAIPA+Q  SER FS AG IVT TR++L+PENVE L +L
Sbjct:   16 DIIDWWKCNVTRFPILAAVARQYLAIPATQVSSERLFSDAGNIVTATRSKLIPENVEKLCFL 77          
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: UPI000BBD9CAA (zinc finger BED domain-containing protein 1-like n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD9CAA)

HSP 1 Score: 72.8 bits (177), Expect = 4.640e-12
Identity = 59/190 (31.05%), Postives = 88/190 (46.32%), Query Frame = 1
Query:   64 ATVLDPRSKHLYGILPEEQPVVWRVVASEAVEMALRNKSGDTVVVPVTMLTIETSPVPAAGQGGPKRPRLNPFKATAAVHAVSSSTAGDSTDEIREQMFTIVDMQVSAFKTAPGIRVSEVVGGKTVYNDPLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRLLPENVEVLVYL 633
            AT LDPR K L  +       +W  +  E V +  + +         +    E+ P     +  P   +     A A V A   +T   ST  + E     +  +V+++K    I V E         DPL WW T   ++P +A L +  LA+P +   SER FSTAG IVT +R+RLLPENV+ L+++
Sbjct:   60 ATALDPRFKSLPYLDEACVQKIWDDLTLEIVNLEEQAQQHCEAQAASSSSAAESEP----SETSPPHKK----SAMATVFADFFTTEARSTKPLPET----IREEVTSYKETSCISVDE---------DPLAWWKTNAHKYPHVAKLAQRDLAVPGTSVPSERVFSTAGDIVTASRSRLLPENVDKLIFM 228          
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Match: A0A151XCN0_9HYME (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Trachymyrmex zeteki TaxID=64791 RepID=A0A151XCN0_9HYME)

HSP 1 Score: 68.9 bits (167), Expect = 6.170e-12
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  370 DMQVSAFKTAPGIRVSEVVGGKTVYNDPLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRLLPENVEVLVYL 633
            + Q+ A+ T P +R +          D L WW  +   FPIL+ L R  L IPA+ A SERTF TAG IVTP R+ L PENV +LV+L
Sbjct:    1 ESQLQAYLTKPQLRFNL---------DYLKWWKARADRFPILSNLARKYLCIPATSANSERTFFTAGNIVTPKRS-LFPENVNMLVFL 78          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120655.1584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI2.250e-6256.11Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE5.460e-5353.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI1_9PHAE2.150e-3136.82Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE6.570e-2350.00Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A8B8G1F8_9HEMI1.490e-1458.06zinc finger BED domain-containing protein 1-like n... [more]
UPI0005F55F892.240e-1349.44zinc finger BED domain-containing protein 1-like n... [more]
A0A2S2P4C5_SCHGA8.750e-1351.61Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A151I7P1_9HYME3.670e-1256.45Zinc finger BED domain-containing protein 1 (Fragm... [more]
UPI000BBD9CAA4.640e-1231.05zinc finger BED domain-containing protein 1-like n... [more]
A0A151XCN0_9HYME6.170e-1246.59Zinc finger BED domain-containing protein 1 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120655contigH-elongata_contig120655:968..1600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue4.3e-59
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size633
Cds size633
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.0492256-CDS-H-elongata_contig120655:967..16001622929708.0492256-CDS-H-elongata_contig120655:967..1600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120655 968..1600 -
1691679127.1422114-CDS-H-elongata_contig120655:967..16001691679127.1422114-CDS-H-elongata_contig120655:967..1600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120655 968..1600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120655.1584.1prot_H-elongata_contig120655.1584.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120655 968..1600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120655.1584.1

>prot_H-elongata_contig120655.1584.1 ID=prot_H-elongata_contig120655.1584.1|Name=mRNA_H-elongata_contig120655.1584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp
ILEDKEGKRRQPQGFKLRQVCATVLDPRSKHLYGILPEEQPVVWRVVASE
AVEMALRNKSGDTVVVPVTMLTIETSPVPAAGQGGPKRPRLNPFKATAAV
HAVSSSTAGDSTDEIREQMFTIVDMQVSAFKTAPGIRVSEVVGGKTVYND
PLGWWPTKEREFPILATLTRCVLAIPASQAQSERTFSTAGLIVTPTRNRL
LPENVEVLVYL
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mRNA from alignment at H-elongata_contig120655:968..1600-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120655.1584.1 ID=mRNA_H-elongata_contig120655.1584.1|Name=mRNA_H-elongata_contig120655.1584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=633bp|location=Sequence derived from alignment at H-elongata_contig120655:968..1600- (Himanthalia elongata Himel1 dioecious)
ATCCTCGAAGACAAGGAGGGCAAGCGGCGCCAACCCCAGGGCTTTAAGCT GAGGCAGGTGTGCGCAACCGTCCTCGACCCGAGGTCCAAGCATCTCTACG GCATACTCCCGGAGGAACAGCCAGTTGTGTGGCGTGTTGTCGCCAGCGAA GCAGTGGAGATGGCTCTGAGGAACAAGTCCGGCGACACGGTAGTCGTCCC CGTGACAATGCTAACCATTGAGACGTCGCCGGTCCCGGCCGCCGGACAGG GGGGACCGAAGCGACCTCGCTTGAACCCGTTCAAGGCCACCGCGGCTGTC CACGCCGTGAGTAGCAGTACCGCTGGGGACTCCACCGATGAGATCCGGGA GCAAATGTTCACCATCGTCGACATGCAGGTCTCCGCCTTCAAGACTGCAC CTGGCATAAGGGTTTCGGAGGTGGTAGGAGGAAAGACGGTCTACAACGAT CCTCTTGGCTGGTGGCCCACCAAGGAGCGAGAATTCCCTATCCTGGCCAC ACTAACTCGTTGTGTGCTTGCCATTCCTGCCTCGCAAGCACAATCCGAGC GCACATTTTCTACGGCAGGGCTAATCGTAACGCCCACGCGGAATAGACTA CTTCCTGAGAACGTAGAGGTTCTCGTGTACTTG
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Coding sequence (CDS) from alignment at H-elongata_contig120655:968..1600-

>mRNA_H-elongata_contig120655.1584.1 ID=mRNA_H-elongata_contig120655.1584.1|Name=mRNA_H-elongata_contig120655.1584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at H-elongata_contig120655:968..1600- (Himanthalia elongata Himel1 dioecious)
ATCCTCGAAGACAAGGAGGGCAAGCGGCGCCAACCCCAGGGCTTTAAGCT
GAGGCAGGTGTGCGCAACCGTCCTCGACCCGAGGTCCAAGCATCTCTACG
GCATACTCCCGGAGGAACAGCCAGTTGTGTGGCGTGTTGTCGCCAGCGAA
GCAGTGGAGATGGCTCTGAGGAACAAGTCCGGCGACACGGTAGTCGTCCC
CGTGACAATGCTAACCATTGAGACGTCGCCGGTCCCGGCCGCCGGACAGG
GGGGACCGAAGCGACCTCGCTTGAACCCGTTCAAGGCCACCGCGGCTGTC
CACGCCGTGAGTAGCAGTACCGCTGGGGACTCCACCGATGAGATCCGGGA
GCAAATGTTCACCATCGTCGACATGCAGGTCTCCGCCTTCAAGACTGCAC
CTGGCATAAGGGTTTCGGAGGTGGTAGGAGGAAAGACGGTCTACAACGAT
CCTCTTGGCTGGTGGCCCACCAAGGAGCGAGAATTCCCTATCCTGGCCAC
ACTAACTCGTTGTGTGCTTGCCATTCCTGCCTCGCAAGCACAATCCGAGC
GCACATTTTCTACGGCAGGGCTAATCGTAACGCCCACGCGGAATAGACTA
CTTCCTGAGAACGTAGAGGTTCTCGTGTACTTGATCCTCGAAGACAAGGA
GGGCAAGCGGCGCCAACCCCAGGGCTTTAAGCTGAGGCAGGTGTGCGCAA
CCGTCCTCGACCCGAGGTCCAAGCATCTCTACGGCATACTCCCGGAGGAA
CAGCCAGTTGTGTGGCGTGTTGTCGCCAGCGAAGCAGTGGAGATGGCTCT
GAGGAACAAGTCCGGCGACACGGTAGTCGTCCCCGTGACAATGCTAACCA
TTGAGACGTCGCCGGTCCCGGCCGCCGGACAGGGGGGACCGAAGCGACCT
CGCTTGAACCCGTTCAAGGCCACCGCGGCTGTCCACGCCGTGAGTAGCAG
TACCGCTGGGGACTCCACCGATGAGATCCGGGAGCAAATGTTCACCATCG
TCGACATGCAGGTCTCCGCCTTCAAGACTGCACCTGGCATAAGGGTTTCG
GAGGTGGTAGGAGGAAAGACGGTCTACAACGATCCTCTTGGCTGGTGGCC
CACCAAGGAGCGAGAATTCCCTATCCTGGCCACACTAACTCGTTGTGTGC
TTGCCATTCCTGCCTCGCAAGCACAATCCGAGCGCACATTTTCTACGGCA
GGGCTAATCGTAACGCCCACGCGGAATAGACTACTTCCTGAGAACGTAGA
GGTTCTCGTGTACTTG
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