mRNA_H-elongata_contig12058.1580.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12058.1580.1
Unique NamemRNA_H-elongata_contig12058.1580.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: D7FQ08_ECTSI (Metallophos domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ08_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.160e-38
Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 1
Query:   19 QTIGSAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLGSVAEHSRQCKKMREEGPLVVYSHDGREGGLSPQVPTFWGDYYREHARDVREVSV 312
            + IGSAPLERQIRELGS +H+FGHTHIPID+  +GVRY+QWPLG++ E S +   MRE+GPL+VYSHDG EGGL P V T+WG++Y+ + RD  +  +
Sbjct:  351 KVIGSAPLERQIRELGSDVHIFGHTHIPIDMTSEGVRYVQWPLGTLREQSYRTNDMREKGPLLVYSHDGSEGGLRPPVHTWWGEFYKAYPRDPHDTEI 448          
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: A0A835Z6X9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.620e-32
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   31 SAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLGSVAEHSRQCKKMREEGPLVVYSHDG---------REGGL--SPQVPTFWGDYYREHARDVREVS 309
            + PL  Q+R+L S +HVFGHTHIPID+  DGVRYLQWPLGS  E +RQC++MRE GPL++Y+            R GG   + + PT WG YY EHARD  +VS
Sbjct:    1 AVPLRAQVRQLRSDMHVFGHTHIPIDMEVDGVRYLQWPLGSPREQARQCRRMREAGPLLLYNXXXXXXXXXXXQRPGGALATGRHPTLWGSYYSEHARDTSQVS 104          
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: A0A7S4D9V0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9V0_HETAK)

HSP 1 Score: 114 bits (285), Expect = 2.560e-29
Identity = 51/98 (52.04%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   19 QTIGSAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLGSVAEHSRQCKKMREEGPLVVYSHDGREGGLSPQVPTFWGDYYREHARDVREVSV 312
            + IGS PLERQ+R LGS LH++GH HIP+DI   GVRY  WPLGS  E  RQC  +   GPL VY       G      T WGD+YREHARD     +
Sbjct:  128 KVIGSDPLERQVRRLGSDLHIYGHLHIPMDIELGGVRYCHWPLGSAREQGRQCAPVLAAGPLAVYDTAAAAAGPLEVQATMWGDHYREHARDPSNAEI 225          
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: W7T6H8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6H8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.130e-27
Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   19 QTIGSAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLGSVAEHSRQCKKMREEGPLVVYSHDGREGGLSPQVPTFWGDYYREHARDVREVSV 312
            + IGS PL +Q+  L   LHVFGHTHIPID+   G+RYLQWPLGSV E SRQ  +M   GP++V+  D   GGL   +PT WG +YRE AR+V E  +
Sbjct:  439 KVIGSTPLRKQVEALRPDLHVFGHTHIPIDLTVQGIRYLQWPLGSVGEQSRQTYEMGRRGPVLVF--DEERGGLVGTIPTRWGAHYREAARNVLETEL 534          
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: F0Y4R2_AURAN (Metallophos domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4R2_AURAN)

HSP 1 Score: 95.1 bits (235), Expect = 1.170e-20
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   28 GSAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLGSVAEHSRQCKKMREEGPLVVYSHDGREGGLSPQVPTFWGDYYREHARD 294
            GS  +E Q+R LG   HVFGHTH+  D+  DGVRY+ WPLGS  E + Q + +   G LV++  DG + G +P+  TFWGD+YR+  RD
Sbjct:  384 GSELIEAQLRVLGPDAHVFGHTHLCYDLELDGVRYVNWPLGSAREMANQTRVVAGSGALVLF--DGAKDGFAPRQWTFWGDWYRDRRRD 470          
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: A0A7S2CUQ4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CUQ4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.430e-16
Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   19 QTIGSAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLGSVAEHSRQCKKMREEGPLVVYSHDGREGGLSPQVPTFWGDYYREHARD 294
            +  GS  +ERQ+RE  S++H+FGH+HIP+D+  +GVRY+ W LGS  E   Q + +   G L++      +   +P   T+W +YY +H RD
Sbjct:    7 KVCGSNEIERQLREAKSSVHIFGHSHIPMDMTLEGVRYVNWCLGSPREMKNQTRLVAGTGILLLLD----DVAWAPPQWTYWSEYYDQHPRD 94          
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: A0A7S0JDJ9_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JDJ9_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 1.830e-16
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   28 GSAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLGSVAEHSRQCKKMREEGPLVVYSHDGREGGLSPQVPTFWGDYYREHARDV 297
            GS  LE QIR+L   +H+FGHTHIP D   +GVRY+QW LG+  E   Q + +    PL VY  D   GG +PQ  T WG +Y  +ARD+
Sbjct:  373 GSRKLEEQIRQLMPDMHLFGHTHIPFDTTIEGVRYVQWALGTPREQRGQTRVVF--APLCVY--DTHCGGEAPQHWTHWGHHYEVYARDL 458          
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: R1CX54_EMIHU (Metallophos domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CX54_EMIHU)

HSP 1 Score: 80.9 bits (198), Expect = 9.160e-16
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   28 GSAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLGSVAEHSRQCKKMREEGPLVVYSHDGREGGLSPQVPTFWGDYYREHARDVREVS 309
            GS  LE Q+R+L   +H FGHTHIP+D+  DGVRY+QW LG+  E   Q + +   GP+ +Y  DG  GG  PQ    W  +Y  +ARD+   +
Sbjct:  275 GSDHLEAQLRQLMPDVHCFGHTHIPMDLTLDGVRYVQWSLGTPREQKGQTRVVF--GPMRIY--DGSTGGELPQHWCHWTRHYELYARDLSRTA 364          
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: A0A7S4E732_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E732_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.360e-15
Identity = 42/95 (44.21%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   16 AQTIGSAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLGSVAEHSRQCKKMREEGPLVVYSHDG---REGGLSPQVPTFWGDYYREHAR 291
            A+  GS  L   +  L   +HVFGHTHIPIDI  DG  ++QWPLGS  E SRQC + +  GPL ++  D    R G       T WG YY +  R
Sbjct:  243 AKVSGSDHLGDVVLALRPDVHVFGHTHIPIDIELDGTYHVQWPLGSPREQSRQCARAKALGPLELFRTDTGVRRLGHDGAPERTAWGQYYSDKPR 337          
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Match: A0A7S4NQC9_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NQC9_GUITH)

HSP 1 Score: 64.7 bits (156), Expect = 7.240e-11
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   19 QTIGSAPLERQIRELGSTLHVFGHTHIPIDIGCDGVRYLQWPLG 150
            + +GS  +ERQ+R++ S LHVFGHTHIPID+  + VRYLQW LG
Sbjct:  106 KVVGSDLIERQLRQVKSDLHVFGHTHIPIDLDVEHVRYLQWSLG 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12058.1580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ08_ECTSI3.160e-3861.22Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A835Z6X9_9STRA1.620e-3253.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D9V0_HETAK2.560e-2952.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7T6H8_9STRA1.130e-2754.08Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
F0Y4R2_AURAN1.170e-2048.31Metallophos domain-containing protein n=1 Tax=Aure... [more]
A0A7S2CUQ4_9STRA1.430e-1639.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0JDJ9_9EUKA1.830e-1647.78Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
R1CX54_EMIHU9.160e-1643.62Metallophos domain-containing protein n=1 Tax=Emil... [more]
A0A7S4E732_9STRA1.360e-1544.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4NQC9_GUITH7.240e-1161.36Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12058contigH-elongata_contig12058:7698..8379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12058.1580.1prot_H-elongata_contig12058.1580.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12058 7703..8303 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.8403726-UTR-H-elongata_contig12058:7697..77021622929706.8403726-UTR-H-elongata_contig12058:7697..7702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12058 7698..7702 -
1691679126.5259626-UTR-H-elongata_contig12058:7697..77021691679126.5259626-UTR-H-elongata_contig12058:7697..7702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12058 7698..7702 -
1622929706.9108903-UTR-H-elongata_contig12058:8303..83791622929706.9108903-UTR-H-elongata_contig12058:8303..8379Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12058 8304..8379 -
1691679126.5560682-UTR-H-elongata_contig12058:8303..83791691679126.5560682-UTR-H-elongata_contig12058:8303..8379Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12058 8304..8379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.8641195-CDS-H-elongata_contig12058:7702..78611622929706.8641195-CDS-H-elongata_contig12058:7702..7861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12058 7703..7861 -
1691679126.5359201-CDS-H-elongata_contig12058:7702..78611691679126.5359201-CDS-H-elongata_contig12058:7702..7861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12058 7703..7861 -
1622929706.8843038-CDS-H-elongata_contig12058:8231..83031622929706.8843038-CDS-H-elongata_contig12058:8231..8303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12058 8232..8303 -
1691679126.5461047-CDS-H-elongata_contig12058:8231..83031691679126.5461047-CDS-H-elongata_contig12058:8231..8303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12058 8232..8303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12058.1580.1

>prot_H-elongata_contig12058.1580.1 ID=prot_H-elongata_contig12058.1580.1|Name=mRNA_H-elongata_contig12058.1580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MCSDTRIFQSTLAAMAFDTCNGHLEASRNIPDSARRCARRGLLSYTPTTG
ERAACHLRCPLSGATITASTPATCER*
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mRNA from alignment at H-elongata_contig12058:7698..8379-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12058.1580.1 ID=mRNA_H-elongata_contig12058.1580.1|Name=mRNA_H-elongata_contig12058.1580.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=682bp|location=Sequence derived from alignment at H-elongata_contig12058:7698..8379- (Himanthalia elongata Himel1 dioecious)
AACCACCGAAACCCTGCGCAGACCATTGGGTCAGCGCCGCTTGAGAGGCA GATAAGGGAGCTAGGGTCCACCTTGCATGTGTTCGGACACACGCATATTC CAATCGACATTGGCTGCGATGGCGTTCGATACCTGCAATGGCCACTTGGT AAGCGACCGGAGGTGACGTAATTCTGAGGCATGGTTTGTTTTACTGCTGG AAACGGGAGGCGATAGGGAGGGATGCGGGAGAGCATCTTCCCGTCCCGTC CCATTCCATCCTCCGAAAAAAACATATTTTGTATTTTTCTTCGTGTATGT TCAGCTCCGACGAGCGCAGTAGGATCGAAGGTTTCAAGTGCTTGTTTAGG AAAGTGGTGAATGATAATGTCGGGGGTCTTTTATCGATCGCACTGGTGCT ACAACCATACTCGCATTTTTCTCCGCCCCCTGGCGAGCTTGTCCACGAAA AGAGGGAAAAGAGCCTGCAACCTTTGACCCTTTCGACCTCACCGTGCGTT CACCTTTTTTCCTCTCAGGAAGCGTCGCGGAACATTCCCGACAGTGCAAG AAGATGCGCGAGGAGGGGCCTCTTGTCGTATACTCCCACGACGGGCGAGA GGGCGGCCTGTCACCTCAGGTGCCCACTTTCTGGGGCGACTATTACCGCG AGCACGCCCGCGACGTGCGAGAGGTGAGTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig12058:7698..8379-

>mRNA_H-elongata_contig12058.1580.1 ID=mRNA_H-elongata_contig12058.1580.1|Name=mRNA_H-elongata_contig12058.1580.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig12058:7698..8379- (Himanthalia elongata Himel1 dioecious)
ATGTGTTCGGACACACGCATATTCCAATCGACATTGGCTGCGATGGCGTT
CGATACCTGCAATGGCCACTTGATGTGTTCGGACACACGCATATTCCAAT
CGACATTGGCTGCGATGGCGTTCGATACCTGCAATGGCCACTTGGAAGCG
TCGCGGAACATTCCCGACAGTGCAAGAAGATGCGCGAGGAGGGGCCTCTT
GTCGTATACTCCCACGACGGGCGAGAGGGCGGCCTGTCACCTCAGGTGCC
CACTTTCTGGGGCGACTATTACCGCGAGCACGCCCGCGACGTGCGAGAGG
TGAGAAGCGTCGCGGAACATTCCCGACAGTGCAAGAAGATGCGCGAGGAG
GGGCCTCTTGTCGTATACTCCCACGACGGGCGAGAGGGCGGCCTGTCACC
TCAGGTGCCCACTTTCTGGGGCGACTATTACCGCGAGCACGCCCGCGACG
TGCGAGAGGTGA
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