mRNA_H-elongata_contig120544.1576.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120544.1576.1
Unique NamemRNA_H-elongata_contig120544.1576.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 6.970e-60
Identity = 105/149 (70.47%), Postives = 122/149 (81.88%), Query Frame = 1 
Query:   13 RSVLGKISDGAKVTFNTVMAVSTLASLLLAAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQVLGLAARVIRVIVTLPIMLSGTWVILQNIPQLLPRGVDLKGAGALAALLATPEVLEAAVIVAFLGGTMLWAINFAATTVEAM 459
            +SVL K  +  K  FN  MA STLASL LAAE  W+L G PLTLSNAVPTLTKLLP TGIGVFGAAQ++GL ARV+RVIVTLP+M+SGTWVILQN P+L P+G+DL GAG+LAALLATPEVLEAA ++A LGGT +WA+NFA   V A+
Sbjct:  185 KSVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGAL 333
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BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.300e-35
Identity = 72/102 (70.59%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:    1 EEEERSVLGKISDGAKVTFNTVMAVSTLASLLLAAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQVLGLAARVIRVIVTLPIMLSGTWVILQNIPQ 306
            EE  + VL K  +  K  FN  MA STLASL+LAAE  W+L G PLTLSNAVPTLTKLLP TGIGVFGAAQ++GL ARV+RVIVTLP+M+SGTWVILQN P+
Sbjct:  182 EEGGKPVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283
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BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.560e-18
Identity = 58/153 (37.91%), Postives = 89/153 (58.17%), Query Frame = 1 
Query:   31 ISDGAKVTFNTVMAVSTLASLLLAAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQVLGLAARVIRVIVTLPIMLSGTWVILQNIPQLLPRGVDLKGAGALAALLATPEVLEAAVIVAFLGGTMLWAINFAATTVEAMA--RRRDGSD 483
            I +  +  +N ++   T+AS++LA +   +L+  P+TL     TL  LLP    GV GAA+++ +  R++RV+VT+P++L G ++   +IP LL    DL   G L A+LATPEVLEA  ++A + G  +W +   A  V  MA  R  DG D
Sbjct:   26 IGEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPITLD----TLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDL-ATGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMASVRGNDGDD 173
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BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.820e-14
Identity = 46/157 (29.30%), Postives = 83/157 (52.87%), Query Frame = 1 
Query:   10 ERSVLGKIS-----DGAKVTFNTVMAVSTLASLLLAAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQVLGLAARVIRVIVTLPIMLSGTWVILQNIPQLLPRGVDLKGAGALAALLATPEVLEAAVIVAFLGGTMLWAINFAATTVEAMAR 465
            +R   GKI+     D AK  F  ++    + S+  A    ++L   P TLSN   T+T +LPA   G FG  +++G   R++R+++++PI++ GTW +   +P+ +    DL     L  + A PE++EA +++ F+G  + W        VE++ +
Sbjct:  114 DRDQKGKITFQSVLDSAKKAFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLASTSLLG-IFAVPEIVEAIILILFVGSFLFWLTQQFLKLVESLTK 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120544.1576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGI5_9PHAE6.970e-6070.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX7_ECTSI1.300e-3570.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM52_9STRA4.560e-1837.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4B2_9STRA3.820e-1429.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120544contigH-elongata_contig120544:935..1893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002870.1
Exons2
Model size623
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120544.1576.1prot_H-elongata_contig120544.1576.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120544 1066..1827 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.587229-UTR-H-elongata_contig120544:934..10651622929706.587229-UTR-H-elongata_contig120544:934..1065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120544 935..1065 -
1691679126.3936627-UTR-H-elongata_contig120544:934..10651691679126.3936627-UTR-H-elongata_contig120544:934..1065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120544 935..1065 -
1622929706.632729-UTR-H-elongata_contig120544:1827..18931622929706.632729-UTR-H-elongata_contig120544:1827..1893Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120544 1828..1893 -
1691679126.4381409-UTR-H-elongata_contig120544:1827..18931691679126.4381409-UTR-H-elongata_contig120544:1827..1893Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120544 1828..1893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.6024635-CDS-H-elongata_contig120544:1065..12511622929706.6024635-CDS-H-elongata_contig120544:1065..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120544 1066..1251 -
1691679126.4041636-CDS-H-elongata_contig120544:1065..12511691679126.4041636-CDS-H-elongata_contig120544:1065..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120544 1066..1251 -
1622929706.6164439-CDS-H-elongata_contig120544:1587..18271622929706.6164439-CDS-H-elongata_contig120544:1587..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120544 1588..1827 -
1691679126.4259198-CDS-H-elongata_contig120544:1587..18271691679126.4259198-CDS-H-elongata_contig120544:1587..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120544 1588..1827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120544.1576.1

>prot_H-elongata_contig120544.1576.1 ID=prot_H-elongata_contig120544.1576.1|Name=mRNA_H-elongata_contig120544.1576.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MAVSTLASLLLAAETFWELRGTPLTLSNAVPTLTKLLPATGIGVFGAAQV
LGLAARVIRVIVTLPIMLSGTWVILQNIPQLLPRGVDLKGAGALAALLAT
PEVLEAAVIVAFLGGTMLWAINFAATTVEAMARRRDGSDEG*
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mRNA from alignment at H-elongata_contig120544:935..1893-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120544.1576.1 ID=mRNA_H-elongata_contig120544.1576.1|Name=mRNA_H-elongata_contig120544.1576.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=959bp|location=Sequence derived from alignment at H-elongata_contig120544:935..1893- (Himanthalia elongata Himel1 dioecious)
GAGGAGGAAGAGAGGTCGGTGCTGGGGAAAATCAGTGACGGTGCTAAGGT
GACCTTCAACACGGTGATGGCAGTGAGCACCCTGGCCTCGCTGCTGCTCG
CGGCCGAGACGTTCTGGGAGCTTCGTGGGACGCCGCTCACGTTGTCAAAC
GCCGTGCCGACGCTGACCAAGCTCTTGCCCGCGACGGGCATCGGAGTCTT
CGGAGCGGCGCAGGTGTTGGGGCTGGCGGCGAGAGTCATCAGGGTGATCG
TGACACTACCAATCATGCTCAGCGGTACTTGGGTTATCCTGCAAAACATT
CCGCAGGTAGAGCCGAAGACGTGGTTGTTGTAGTGGTGGTGGTAATTTTC
GACGGTGTTAAAACTGGACGTACTTCGCCGCTTTTGGGGTATTTCGACGT
CTGGTTATTTAGTATTTTAAACGGTTGGTCGACAATCTCGCGCACTTTAC
CTACTCTCTTCATCGTAGTGAAACGCAGCGAGCTGGGTGCGTGGCAGTAA
AAATAGTCCAAAGTTTCACTTCCTCAACAACCGCAGGTGGCGACGGTGAA
GCCTATAAGTGATCTTCCCTCCGCGCTCACGTTTAATATATATCTTCCGC
CTCTCTTCTCCGCACCTCGCCGCCCTCACTGACCAACGTCAGCTGCTGCC
GAGGGGGGTAGACCTAAAGGGTGCGGGGGCTCTCGCGGCGTTGCTGGCCA
CACCGGAGGTGCTCGAAGCGGCGGTGATCGTGGCGTTCCTCGGGGGCACC
ATGCTCTGGGCGATCAACTTTGCGGCGACCACTGTCGAGGCGATGGCGCG
TCGAAGAGACGGCTCCGACGAGGGATGAAGAGCTATTGATGTATTGGAGT
CGATATTTGTTCGGCTGACTACCTTCCGGTGGGTTGGAAGGGTATTTTAA
GCTTCCGATTCGGGGAGTACCAATCGCGTGGTTTTGTTTGCAGCCGCTGG
GTTGCGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig120544:935..1893-

>mRNA_H-elongata_contig120544.1576.1 ID=mRNA_H-elongata_contig120544.1576.1|Name=mRNA_H-elongata_contig120544.1576.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig120544:935..1893- (Himanthalia elongata Himel1 dioecious)
ATGGCAGTGAGCACCCTGGCCTCGCTGCTGCTCGCGGCCGAGACGTTCTG
GGAGCTTCGTGGGACGCCGCTCACGTTGTCAAACGCCGTGCCGACGCTGA
CCAAGCTCTTGCCCGCGACGGGCATCGGAGTCTTCGGAGCGGCGCAGGTG
TTGGGGCTGGCGGCGAGAGTCATCAGGGTGATCGTGACACTACCAATCAT
GCTCAGCGGTACTTGGGTTATCCTGCAAAACATTCCGCAGATGGCAGTGA
GCACCCTGGCCTCGCTGCTGCTCGCGGCCGAGACGTTCTGGGAGCTTCGT
GGGACGCCGCTCACGTTGTCAAACGCCGTGCCGACGCTGACCAAGCTCTT
GCCCGCGACGGGCATCGGAGTCTTCGGAGCGGCGCAGGTGTTGGGGCTGG
CGGCGAGAGTCATCAGGGTGATCGTGACACTACCAATCATGCTCAGCGGT
ACTTGGGTTATCCTGCAAAACATTCCGCAGCTGCTGCCGAGGGGGGTAGA
CCTAAAGGGTGCGGGGGCTCTCGCGGCGTTGCTGGCCACACCGGAGGTGC
TCGAAGCGGCGGTGATCGTGGCGTTCCTCGGGGGCACCATGCTCTGGGCG
ATCAACTTTGCGGCGACCACTGTCGAGGCGATGGCGCGTCGAAGAGACGG
CTCCGACGAGGGATGACTGCTGCCGAGGGGGGTAGACCTAAAGGGTGCGG
GGGCTCTCGCGGCGTTGCTGGCCACACCGGAGGTGCTCGAAGCGGCGGTG
ATCGTGGCGTTCCTCGGGGGCACCATGCTCTGGGCGATCAACTTTGCGGC
GACCACTGTCGAGGCGATGGCGCGTCGAAGAGACGGCTCCGACGAGGGAT
GA
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