mRNA_H-elongata_contig120235.1561.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120235.1561.1
Unique NamemRNA_H-elongata_contig120235.1561.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig120235.1561.1 vs. uniprot
Match: D7G1S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S5_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 5.130e-57
Identity = 84/111 (75.68%), Postives = 94/111 (84.68%), Query Frame = 1 
Query:    1 GRLQPTGVRQKARPDIYFNKGGSDFRCPRTFSSFGRQVVSRDIYRTASTTAFTRQDRFYVPGDKFKAYGGTPISSLGNQPTSTRKSASRAHFGTSIRDSAFKMYALWSVNQ 333
            GRLQPT VRQK RP++ F+KGGSDFRCPRTFS  G+Q +SRD+YR+A    FTRQDR+YVPGDKF+ +GGTPISSLGNQPTSTR SA RAHFGTS R SA KMYALWSV Q
Sbjct:    2 GRLQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRVHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQ 112
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BLAST of mRNA_H-elongata_contig120235.1561.1 vs. uniprot
Match: A0A6H5K9L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L3_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.140e-55
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 1 
Query:    1 GRLQPTGVRQKARPDIYFNKGGSDFRCPRTFSSFGRQVVSRDIYRTASTTAFTRQDRFYVPGDKFKAYGGTPISSLGNQPTSTRKSASRAHFGTSIRDSAFKMYALWSVNQ 333
            GR QPT VRQK RP++ F+KGGSDFRCPRTFS  G+Q +SRD+YR+A    FTRQDR++VPGDKF+A+GGTPISSLGNQPTSTR SA RAHFGTS R SA KMYALWSV Q
Sbjct:   31 GRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWHVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAKKMYALWSVGQ 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120235.1561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1S5_ECTSI5.130e-5775.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9L3_9PHAE2.140e-5574.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120235contigH-elongata_contig120235:1193..1726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004330.1
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.9729881-CDS-H-elongata_contig120235:1192..13291622929704.9729881-CDS-H-elongata_contig120235:1192..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120235 1193..1329 -
1691679125.7028036-CDS-H-elongata_contig120235:1192..13291691679125.7028036-CDS-H-elongata_contig120235:1192..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120235 1193..1329 -
1622929704.9900649-CDS-H-elongata_contig120235:1527..17261622929704.9900649-CDS-H-elongata_contig120235:1527..1726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120235 1528..1726 -
1691679125.7134473-CDS-H-elongata_contig120235:1527..17261691679125.7134473-CDS-H-elongata_contig120235:1527..1726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120235 1528..1726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120235.1561.1prot_H-elongata_contig120235.1561.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120235 1193..1726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120235.1561.1

>prot_H-elongata_contig120235.1561.1 ID=prot_H-elongata_contig120235.1561.1|Name=mRNA_H-elongata_contig120235.1561.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
GRLQPTGVRQKARPDIYFNKGGSDFRCPRTFSSFGRQVVSRDIYRTASTT
AFTRQDRFYVPGDKFKAYGGTPISSLGNQPTSTRKSASRAHFGTSIRDSA
FKMYALWSVNQ*
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mRNA from alignment at H-elongata_contig120235:1193..1726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120235.1561.1 ID=mRNA_H-elongata_contig120235.1561.1|Name=mRNA_H-elongata_contig120235.1561.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig120235:1193..1726- (Himanthalia elongata Himel1 dioecious)
GGTCGATTACAGCCAACAGGCGTCCGCCAGAAGGCCCGTCCAGATATTTA
CTTCAACAAAGGGGGTAGCGATTTCCGTTGTCCGCGGACGTTCAGCAGCT
TCGGACGGCAAGTCGTCTCTCGAGATATCTACCGCACGGCCTCCACCACC
GCGTTTACGAGGCAAGATAGATTTTATGTCCCGGGCGACAAATTCAAAGG
TGAGGAAGAAACGCCGTGGACATTTACTTCTAACTACGATGATAAGTACC
GTAGTTTGTCAGGCAGTCATGAGCAGAGGTTGATCCATCACCACTGAGTT
CATCCGAATGTCAGTCCCTGCATCGGTGTATCGATTTATCTCTGTCCCTT
ACGGCGCGATGATGCCTCGTTGGTTGATGCGTGCGCTCCGTCCACAGCCT
ACGGAGGAACGCCCATCTCATCACTAGGCAACCAGCCCACCTCCACCCGG
AAGTCGGCGAGTCGAGCGCATTTCGGCACGTCTATTCGCGACAGCGCTTT
TAAGATGTATGCGCTATGGTCGGTGAACCAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig120235:1193..1726-

>mRNA_H-elongata_contig120235.1561.1 ID=mRNA_H-elongata_contig120235.1561.1|Name=mRNA_H-elongata_contig120235.1561.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig120235:1193..1726- (Himanthalia elongata Himel1 dioecious)
GGTCGATTACAGCCAACAGGCGTCCGCCAGAAGGCCCGTCCAGATATTTA
CTTCAACAAAGGGGGTAGCGATTTCCGTTGTCCGCGGACGTTCAGCAGCT
TCGGACGGCAAGTCGTCTCTCGAGATATCTACCGCACGGCCTCCACCACC
GCGTTTACGAGGCAAGATAGATTTTATGTCCCGGGCGACAAATTCAAAGG
GTCGATTACAGCCAACAGGCGTCCGCCAGAAGGCCCGTCCAGATATTTAC
TTCAACAAAGGGGGTAGCGATTTCCGTTGTCCGCGGACGTTCAGCAGCTT
CGGACGGCAAGTCGTCTCTCGAGATATCTACCGCACGGCCTCCACCACCG
CGTTTACGAGGCAAGATAGATTTTATGTCCCGGGCGACAAATTCAAAGCC
TACGGAGGAACGCCCATCTCATCACTAGGCAACCAGCCCACCTCCACCCG
GAAGTCGGCGAGTCGAGCGCATTTCGGCACGTCTATTCGCGACAGCGCTT
TTAAGATGTATGCGCTATGGTCGGTGAACCAGTAGCCTACGGAGGAACGC
CCATCTCATCACTAGGCAACCAGCCCACCTCCACCCGGAAGTCGGCGAGT
CGAGCGCATTTCGGCACGTCTATTCGCGACAGCGCTTTTAAGATGTATGC
GCTATGGTCGGTGAACCAGTAG
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