mRNA_H-elongata_contig12014.1555.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12014.1555.1
Unique NamemRNA_H-elongata_contig12014.1555.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig12014.1555.1 vs. uniprot
Match: A0A6H5KTD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.120e-9
Identity = 56/145 (38.62%), Postives = 75/145 (51.72%), Query Frame = -2 
Query:  473 TQLFRSM-VPIRLSAQDIMSMMYLRRRLKSAGPLVSDALAVLSRLVLGDG--------------------------------GALQPAAYSGPGTIMFADSIIPLTKLLVKAGQIRAKQERDIEAEKMMVTEAKAAMSRATARAR 808
            TQLF S  +PIR+S++ ++++  LR RLK+AGP   DALAVLSRLVLGDG                                 ALQ AAY+GP ++ F +S I  T +  KA      Q +++E +   V  A A  +RA ARAR
Sbjct:  246 TQLFSSAPMPIRVSSEAMLALSRLRWRLKAAGPQALDALAVLSRLVLGDGCNPGGGDGVXXXXXXXXXXXXXXXXXXXTRGGSALQAAAYTGPCSLAFVESNISTTSMTSKA------QAQEVETKSREVEAAMAKEARAAARAR 384
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12014.1555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTD5_9PHAE4.120e-938.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12014contigH-elongata_contig12014:4504..5312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size809
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12014.1555.1prot_H-elongata_contig12014.1555.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12014 4617..5270 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.5230608-UTR-H-elongata_contig12014:4503..46161622929704.5230608-UTR-H-elongata_contig12014:4503..4616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12014 4504..4616 +
1691679125.5570502-UTR-H-elongata_contig12014:4503..46161691679125.5570502-UTR-H-elongata_contig12014:4503..4616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12014 4504..4616 +
1622929704.552996-UTR-H-elongata_contig12014:5270..53121622929704.552996-UTR-H-elongata_contig12014:5270..5312Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12014 5271..5312 +
1691679125.5773087-UTR-H-elongata_contig12014:5270..53121691679125.5773087-UTR-H-elongata_contig12014:5270..5312Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12014 5271..5312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.5394104-CDS-H-elongata_contig12014:4616..52701622929704.5394104-CDS-H-elongata_contig12014:4616..5270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12014 4617..5270 +
1691679125.5668423-CDS-H-elongata_contig12014:4616..52701691679125.5668423-CDS-H-elongata_contig12014:4616..5270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12014 4617..5270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12014.1555.1

>prot_H-elongata_contig12014.1555.1 ID=prot_H-elongata_contig12014.1555.1|Name=mRNA_H-elongata_contig12014.1555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
MGGSSGSSGKRNENVKEALHEGFTAAADAGLRARTFKLWVSGASDSSMPD
SMMRSTSRRKPSLRRDSGYSFPSAILLSPTRVRSSAASYAAYVEDIMFIR
SKRERAASPVLGRGAIFPSPRARAVALLIAAFASVTIIFSASMSLSCFAR
ICPALTSSFVKGIMESANIIVPGPEYAAGCSAPPSPRTSRDRTASASETS
GPADLRRRRRYIMDMMS*
back to top

mRNA from alignment at H-elongata_contig12014:4504..5312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12014.1555.1 ID=mRNA_H-elongata_contig12014.1555.1|Name=mRNA_H-elongata_contig12014.1555.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=809bp|location=Sequence derived from alignment at H-elongata_contig12014:4504..5312+ (Himanthalia elongata Himel1 dioecious)
CCCCGAAATGACCGCTGCTTTCCACCGTCTCATGCAAGTCTCCGACAGAC
TCTGTTGCTCGCGTTCCAGCACTGTTTGATACTTTCACCCTTTCTTCATG
TTCGCCGCCCGCCATGGGCGGAAGCTCGGGGAGTTCCGGAAAGCGCAACG
AAAACGTCAAAGAGGCTTTGCACGAGGGGTTCACAGCCGCGGCGGATGCC
GGGCTTCGAGCAAGAACTTTTAAACTGTGGGTTTCGGGCGCCAGCGATTC
GTCGATGCCAGATTCGATGATGCGCTCCACGTCTCGCCGTAAACCCTCGC
TGCGGCGAGACTCTGGATATTCCTTTCCGTCTGCGATATTACTGTCGCCG
ACTCGCGTCCGTTCGAGTGCGGCCTCGTACGCTGCGTATGTTGAAGATAT
CATGTTCATTCGTTCGAAGAGAGAACGGGCTGCGTCTCCAGTTCTTGGTC
GCGGCGCGATATTCCCCTCGCCCCGTGCTCGGGCTGTCGCCCTACTCATT
GCCGCCTTCGCCTCCGTGACCATCATCTTCTCTGCCTCGATGTCCCTTTC
CTGTTTCGCTCGGATCTGCCCCGCCTTGACGAGCAGCTTCGTCAAAGGAA
TAATGGAGTCGGCAAACATTATCGTGCCCGGCCCCGAGTACGCAGCCGGC
TGCAGCGCGCCGCCGTCGCCGAGAACTAGCCGTGACAGAACCGCCAGCGC
GTCGGAGACAAGCGGGCCCGCGGACTTGAGGCGCCGGCGCAGGTACATCA
TGGACATGATGTCCTGAGCGGAGAGTCGGATGGGTACCATCGAGCGGAAC
AGCTGGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12014:4504..5312+

>mRNA_H-elongata_contig12014.1555.1 ID=mRNA_H-elongata_contig12014.1555.1|Name=mRNA_H-elongata_contig12014.1555.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig12014:4504..5312+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGGAAGCTCGGGGAGTTCCGGAAAGCGCAACGAAAACGTCAAAGA
GGCTTTGCACGAGGGGTTCACAGCCGCGGCGGATGCCGGGCTTCGAGCAA
GAACTTTTAAACTGTGGGTTTCGGGCGCCAGCGATTCGTCGATGCCAGAT
TCGATGATGCGCTCCACGTCTCGCCGTAAACCCTCGCTGCGGCGAGACTC
TGGATATTCCTTTCCGTCTGCGATATTACTGTCGCCGACTCGCGTCCGTT
CGAGTGCGGCCTCGTACGCTGCGTATGTTGAAGATATCATGTTCATTCGT
TCGAAGAGAGAACGGGCTGCGTCTCCAGTTCTTGGTCGCGGCGCGATATT
CCCCTCGCCCCGTGCTCGGGCTGTCGCCCTACTCATTGCCGCCTTCGCCT
CCGTGACCATCATCTTCTCTGCCTCGATGTCCCTTTCCTGTTTCGCTCGG
ATCTGCCCCGCCTTGACGAGCAGCTTCGTCAAAGGAATAATGGAGTCGGC
AAACATTATCGTGCCCGGCCCCGAGTACGCAGCCGGCTGCAGCGCGCCGC
CGTCGCCGAGAACTAGCCGTGACAGAACCGCCAGCGCGTCGGAGACAAGC
GGGCCCGCGGACTTGAGGCGCCGGCGCAGGTACATCATGGACATGATGTC
CTGAATGGGCGGAAGCTCGGGGAGTTCCGGAAAGCGCAACGAAAACGTCA
AAGAGGCTTTGCACGAGGGGTTCACAGCCGCGGCGGATGCCGGGCTTCGA
GCAAGAACTTTTAAACTGTGGGTTTCGGGCGCCAGCGATTCGTCGATGCC
AGATTCGATGATGCGCTCCACGTCTCGCCGTAAACCCTCGCTGCGGCGAG
ACTCTGGATATTCCTTTCCGTCTGCGATATTACTGTCGCCGACTCGCGTC
CGTTCGAGTGCGGCCTCGTACGCTGCGTATGTTGAAGATATCATGTTCAT
TCGTTCGAAGAGAGAACGGGCTGCGTCTCCAGTTCTTGGTCGCGGCGCGA
TATTCCCCTCGCCCCGTGCTCGGGCTGTCGCCCTACTCATTGCCGCCTTC
GCCTCCGTGACCATCATCTTCTCTGCCTCGATGTCCCTTTCCTGTTTCGC
TCGGATCTGCCCCGCCTTGACGAGCAGCTTCGTCAAAGGAATAATGGAGT
CGGCAAACATTATCGTGCCCGGCCCCGAGTACGCAGCCGGCTGCAGCGCG
CCGCCGTCGCCGAGAACTAGCCGTGACAGAACCGCCAGCGCGTCGGAGAC
AAGCGGGCCCGCGGACTTGAGGCGCCGGCGCAGGTACATCATGGACATGA
TGTCCTGA
back to top