mRNA_H-elongata_contig119963.1541.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119963.1541.1
Unique NamemRNA_H-elongata_contig119963.1541.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119963.1541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119963contigH-elongata_contig119963:299..1237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size939
Cds size939
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.2531624-CDS-H-elongata_contig119963:298..12371622929703.2531624-CDS-H-elongata_contig119963:298..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119963 299..1237 -
1691679125.0996177-CDS-H-elongata_contig119963:298..12371691679125.0996177-CDS-H-elongata_contig119963:298..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119963 299..1237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119963.1541.1prot_H-elongata_contig119963.1541.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119963 299..1237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119963.1541.1

>prot_H-elongata_contig119963.1541.1 ID=prot_H-elongata_contig119963.1541.1|Name=mRNA_H-elongata_contig119963.1541.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp
SASRLSWAKDSGCLWNDVMFMHVAEVGNLDAVKRARSEGCPWDEKTCSAA
AVGGHLGVLEWLRANGCPWDSDVCASAAIGGHLDLLRWCRARGCPWTGTT
IGYAAWGGHLDVCKWARANGCPWDSGACSLAAEQGHLDVLKWLRDGGCPW
DEGTAAVAAGGGHLETLDWTRANGCPWNEFACVSAARSGRLEALKWCRAN
GCPWNELVPSLAAESGFLNVLKWCRENDCPWDERVCASAARRGRLEILRW
CRENGCPWNRVTCSSAAAGGHLDVLKWCRENGCPWDESTCHKAAAAKHDD
VLEWCRANGCPE*
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mRNA from alignment at H-elongata_contig119963:299..1237-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119963.1541.1 ID=mRNA_H-elongata_contig119963.1541.1|Name=mRNA_H-elongata_contig119963.1541.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=939bp|location=Sequence derived from alignment at H-elongata_contig119963:299..1237- (Himanthalia elongata Himel1 dioecious)
TCGGCGTCCCGACTCTCTTGGGCCAAAGACAGCGGATGTCTCTGGAACGA
CGTCATGTTCATGCACGTGGCCGAGGTGGGAAACTTGGACGCCGTGAAGC
GCGCACGCTCCGAAGGATGTCCTTGGGATGAAAAAACTTGCTCTGCGGCC
GCCGTGGGCGGACACCTCGGCGTTCTCGAGTGGCTGAGGGCGAACGGGTG
CCCCTGGGACAGCGATGTTTGCGCCTCGGCCGCCATCGGGGGCCACCTGG
ATCTCCTCAGGTGGTGTCGAGCTCGAGGCTGCCCTTGGACGGGCACCACG
ATAGGGTACGCCGCTTGGGGGGGACACCTGGACGTGTGCAAGTGGGCGAG
GGCGAATGGCTGCCCGTGGGATTCCGGGGCGTGCTCCCTAGCCGCCGAGC
AGGGACACCTGGACGTGCTGAAGTGGCTGCGTGACGGGGGCTGTCCATGG
GACGAAGGAACGGCGGCGGTCGCCGCGGGGGGCGGTCACCTGGAGACGCT
GGATTGGACTCGGGCCAACGGATGCCCCTGGAATGAGTTCGCGTGCGTGA
GTGCCGCGAGGTCGGGGCGCCTGGAGGCCCTGAAGTGGTGCCGTGCCAAC
GGGTGCCCCTGGAACGAGCTAGTGCCCTCTTTGGCGGCCGAAAGTGGGTT
CCTGAACGTGCTGAAGTGGTGTCGAGAGAACGACTGCCCATGGGACGAGA
GGGTCTGTGCGAGCGCCGCCCGCCGGGGTCGGCTCGAGATCCTTCGATGG
TGTCGAGAGAATGGATGCCCATGGAACCGAGTGACCTGCTCCAGCGCGGC
CGCCGGGGGGCACCTGGACGTCCTGAAATGGTGTCGAGAGAACGGCTGCC
CCTGGGACGAAAGCACTTGCCACAAGGCAGCCGCGGCGAAACACGACGAC
GTACTGGAATGGTGCAGGGCCAACGGGTGCCCGGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig119963:299..1237-

>mRNA_H-elongata_contig119963.1541.1 ID=mRNA_H-elongata_contig119963.1541.1|Name=mRNA_H-elongata_contig119963.1541.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig119963:299..1237- (Himanthalia elongata Himel1 dioecious)
TCGGCGTCCCGACTCTCTTGGGCCAAAGACAGCGGATGTCTCTGGAACGA
CGTCATGTTCATGCACGTGGCCGAGGTGGGAAACTTGGACGCCGTGAAGC
GCGCACGCTCCGAAGGATGTCCTTGGGATGAAAAAACTTGCTCTGCGGCC
GCCGTGGGCGGACACCTCGGCGTTCTCGAGTGGCTGAGGGCGAACGGGTG
CCCCTGGGACAGCGATGTTTGCGCCTCGGCCGCCATCGGGGGCCACCTGG
ATCTCCTCAGGTGGTGTCGAGCTCGAGGCTGCCCTTGGACGGGCACCACG
ATAGGGTACGCCGCTTGGGGGGGACACCTGGACGTGTGCAAGTGGGCGAG
GGCGAATGGCTGCCCGTGGGATTCCGGGGCGTGCTCCCTAGCCGCCGAGC
AGGGACACCTGGACGTGCTGAAGTGGCTGCGTGACGGGGGCTGTCCATGG
GACGAAGGAACGGCGGCGGTCGCCGCGGGGGGCGGTCACCTGGAGACGCT
GGATTGGACTCGGGCCAACGGATGCCCCTGGAATGAGTTCGCGTGCGTGA
GTGCCGCGAGGTCGGGGCGCCTGGAGGCCCTGAAGTGGTGCCGTGCCAAC
GGGTGCCCCTGGAACGAGCTAGTGCCCTCTTTGGCGGCCGAAAGTGGGTT
CCTGAACGTGCTGAAGTGGTGTCGAGAGAACGACTGCCCATGGGACGAGA
GGGTCTGTGCGAGCGCCGCCCGCCGGGGTCGGCTCGAGATCCTTCGATGG
TGTCGAGAGAATGGATGCCCATGGAACCGAGTGACCTGCTCCAGCGCGGC
CGCCGGGGGGCACCTGGACGTCCTGAAATGGTGTCGAGAGAACGGCTGCC
CCTGGGACGAAAGCACTTGCCACAAGGCAGCCGCGGCGAAACACGACGAC
GTACTGGAATGGTGCAGGGCCAACGGGTGCCCGGAGTAGTCGGCGTCCCG
ACTCTCTTGGGCCAAAGACAGCGGATGTCTCTGGAACGACGTCATGTTCA
TGCACGTGGCCGAGGTGGGAAACTTGGACGCCGTGAAGCGCGCACGCTCC
GAAGGATGTCCTTGGGATGAAAAAACTTGCTCTGCGGCCGCCGTGGGCGG
ACACCTCGGCGTTCTCGAGTGGCTGAGGGCGAACGGGTGCCCCTGGGACA
GCGATGTTTGCGCCTCGGCCGCCATCGGGGGCCACCTGGATCTCCTCAGG
TGGTGTCGAGCTCGAGGCTGCCCTTGGACGGGCACCACGATAGGGTACGC
CGCTTGGGGGGGACACCTGGACGTGTGCAAGTGGGCGAGGGCGAATGGCT
GCCCGTGGGATTCCGGGGCGTGCTCCCTAGCCGCCGAGCAGGGACACCTG
GACGTGCTGAAGTGGCTGCGTGACGGGGGCTGTCCATGGGACGAAGGAAC
GGCGGCGGTCGCCGCGGGGGGCGGTCACCTGGAGACGCTGGATTGGACTC
GGGCCAACGGATGCCCCTGGAATGAGTTCGCGTGCGTGAGTGCCGCGAGG
TCGGGGCGCCTGGAGGCCCTGAAGTGGTGCCGTGCCAACGGGTGCCCCTG
GAACGAGCTAGTGCCCTCTTTGGCGGCCGAAAGTGGGTTCCTGAACGTGC
TGAAGTGGTGTCGAGAGAACGACTGCCCATGGGACGAGAGGGTCTGTGCG
AGCGCCGCCCGCCGGGGTCGGCTCGAGATCCTTCGATGGTGTCGAGAGAA
TGGATGCCCATGGAACCGAGTGACCTGCTCCAGCGCGGCCGCCGGGGGGC
ACCTGGACGTCCTGAAATGGTGTCGAGAGAACGGCTGCCCCTGGGACGAA
AGCACTTGCCACAAGGCAGCCGCGGCGAAACACGACGACGTACTGGAATG
GTGCAGGGCCAACGGGTGCCCGGAGTAG
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