mRNA_H-elongata_contig119827.1529.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119827.1529.1
Unique NamemRNA_H-elongata_contig119827.1529.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: D8LBV6_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV6_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.170e-36
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 3 
Query:    3 IHSKAKGHYAVLGVEKMATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDDGPQ 233
            ++SKAKGHY VLG+EK A +D IKK+YRKLALR HPDKNGAPQAHEAFQAIGTAFAVLSD +KR HYDRYGD DGPQ
Sbjct:  132 LNSKAKGHYDVLGIEKGANDDQIKKAYRKLALRLHPDKNGAPQAHEAFQAIGTAFAVLSDADKRAHYDRYGDGDGPQ 208
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BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: A0A6H5JQ06_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ06_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.040e-35
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 3 
Query:    9 SKAKGHYAVLGVEKMATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDDGPQ 233
            SK KGHY VLGVEK A +D IKK+YRKLALR HPDKNGAPQAHEAFQAIGTAFAVLSD +KR HYDRYGDDDGPQ
Sbjct:  165 SKKKGHYDVLGVEKGANDDQIKKAYRKLALRLHPDKNGAPQAHEAFQAIGTAFAVLSDGDKRAHYDRYGDDDGPQ 239
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BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: A0A4D9D2B9_9STRA (J domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2B9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.550e-28
Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 3 
Query:    3 IHSKAKGHYAVLGVEKMATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDDGPQ 233
            I SK KGHY VL V + AT+D IKKSYRKLAL+FHPDKN APQA EAF+AI TAF VLSD +KR  YD++GDDDG +
Sbjct:  118 IQSKKKGHYEVLSVSRTATDDQIKKSYRKLALKFHPDKNAAPQADEAFKAISTAFQVLSDPDKRRSYDQFGDDDGTE 194
[Close]
BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: A0A8J2SL43_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL43_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.630e-27
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 3 
Query:    3 IHSKAKGHYAVLGVEKMATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDD 224
            I +K +GHYAVLG+EK A ED IK++YRKLAL+FHPDKN AP A EAF+ IG AFA LSD++KR HYD YGDD+
Sbjct:   89 IAAKRRGHYAVLGIEKTADEDQIKRAYRKLALKFHPDKNRAPDADEAFKCIGLAFATLSDKDKRRHYDMYGDDE 162
[Close]
BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: A0A7S2XU25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XU25_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.540e-26
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 3 
Query:    3 IHSKAKGHYAVLGVEK-MATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDD 224
            +  K +GHYAVLGV+K  AT+D IK++YRKLAL+ HPDKN AP A EAF+ +G A+A+LSD EK+ HYDR+GD+D
Sbjct:   30 VQKKGQGHYAVLGVDKETATDDTIKRAYRKLALKLHPDKNKAPSASEAFKLLGHAYAILSDNEKKAHYDRWGDED 104
[Close]
BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: A0A835ZD03_9STRA (DnaJ subfamily B protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD03_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.550e-26
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:   21 GHYAVLGVEKMATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDD 224
            GHY VL +EK AT+D IK+SYRKLAL+FHPDKNGAP A EAF+AIG AFAVLSD +KR  YDRYGDD+
Sbjct:  103 GHYEVLCIEKTATDDDIKRSYRKLALKFHPDKNGAPHAPEAFKAIGHAFAVLSDPDKRAAYDRYGDDE 170
[Close]
BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: A0A2P4YST8_9STRA (DnaJ subfamily B protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YST8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 7.090e-25
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 3 
Query:   18 KGHYAVLGVEKMATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDDGPQVQ 239
            K HY VL V++ ATE+ IKK+YRKLAL+ HPDKN AP A +AF+A+G AFA+LSD +KR HYDRYGDD   Q Q
Sbjct:  112 KNHYEVLAVQQAATENEIKKAYRKLALKLHPDKNSAPGAEDAFKAVGKAFAILSDPDKRAHYDRYGDDAPVQQQ 185
[Close]
BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: F0YIU4_AURAN (J domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIU4_AURAN)

HSP 1 Score: 104 bits (259), Expect = 7.550e-25
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 3 
Query:   12 KAKGHYAVLGVEKMATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDD 224
            K +GHY VLGV K A +D IKK+YRKLAL+FHPDKN AP A EAF+ +G A+AVLSD EKR  YDRYGD+D
Sbjct:  107 KNRGHYEVLGVSKSAGDDEIKKAYRKLALKFHPDKNRAPMADEAFKCVGLAYAVLSDGEKRASYDRYGDED 177
[Close]
BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: A0A0P1AZM3_PLAHL (Molecular chaperone (DnaJ superfamily) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZM3_PLAHL)

HSP 1 Score: 102 bits (254), Expect = 1.860e-24
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 3 
Query:   18 KGHYAVLGVEKMATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDDGPQVQ 239
            K HY VL V++ ATE  IKK+YRKLAL+ HPDKN AP A +AF+A+G AFAVLSD +KR HYDRYGDD   Q Q
Sbjct:  113 KTHYEVLAVQQNATESEIKKAYRKLALKLHPDKNSAPGAEDAFKAVGKAFAVLSDHDKRAHYDRYGDDAPVQQQ 186
[Close]
BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Match: A0A833SRF8_PHYIN (J domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A833SRF8_PHYIN)

HSP 1 Score: 102 bits (255), Expect = 2.780e-24
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 3 
Query:   18 KGHYAVLGVEKMATEDLIKKSYRKLALRFHPDKNGAPQAHEAFQAIGTAFAVLSDREKRVHYDRYGDDDGPQVQ 239
            K HY VL V++ ATE+ +KK+YRKLAL+ HPDKN AP A +AF+A+G AFAVLSD +KR HYDRYGDD   Q Q
Sbjct:  113 KNHYEVLAVQQTATENEVKKAYRKLALKLHPDKNSAPGAEDAFKAVGKAFAVLSDPDKRAHYDRYGDDAPVQQQ 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119827.1529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBV6_ECTSI3.170e-3681.82Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A6H5JQ06_9PHAE1.040e-3585.33HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A4D9D2B9_9STRA9.550e-2870.13J domain-containing protein n=2 Tax=Monodopsidacea... [more]
A0A8J2SL43_9STRA2.630e-2768.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2XU25_9STRA2.540e-2662.67Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZD03_9STRA6.550e-2675.00DnaJ subfamily B protein n=1 Tax=Tribonema minus T... [more]
A0A2P4YST8_9STRA7.090e-2564.86DnaJ subfamily B protein n=1 Tax=Phytophthora palm... [more]
F0YIU4_AURAN7.550e-2569.01J domain-containing protein n=1 Tax=Aureococcus an... [more]
A0A0P1AZM3_PLAHL1.860e-2466.22Molecular chaperone (DnaJ superfamily) n=1 Tax=Pla... [more]
A0A833SRF8_PHYIN2.780e-2464.86J domain-containing protein n=3 Tax=Phytophthora T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119827contigH-elongata_contig119827:195..1458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.890774-CDS-H-elongata_contig119827:194..3441622929701.890774-CDS-H-elongata_contig119827:194..344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119827 195..344 +
1691679124.6065574-CDS-H-elongata_contig119827:194..3441691679124.6065574-CDS-H-elongata_contig119827:194..344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119827 195..344 +
1622929701.9084072-CDS-H-elongata_contig119827:1362..14581622929701.9084072-CDS-H-elongata_contig119827:1362..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119827 1363..1458 +
1691679124.6156445-CDS-H-elongata_contig119827:1362..14581691679124.6156445-CDS-H-elongata_contig119827:1362..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119827 1363..1458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119827.1529.1prot_H-elongata_contig119827.1529.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119827 195..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119827.1529.1

>prot_H-elongata_contig119827.1529.1 ID=prot_H-elongata_contig119827.1529.1|Name=mRNA_H-elongata_contig119827.1529.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
LSTRRQRATTRYSGWKRWPRKTLSKSPIENWRSGSTRTRTGPLRLTKRSK
RSARPSLFSATGRRGCTTTAMGTTMVLRYSK*
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mRNA from alignment at H-elongata_contig119827:195..1458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119827.1529.1 ID=mRNA_H-elongata_contig119827.1529.1|Name=mRNA_H-elongata_contig119827.1529.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1264bp|location=Sequence derived from alignment at H-elongata_contig119827:195..1458+ (Himanthalia elongata Himel1 dioecious)
TTATCCACTCGAAGGCAAAGGGCCACTACGCGGTACTCGGGGTGGAAAAG
ATGGCCACGGAAGACCTTATCAAAAAGTCCTATCGAAAACTGGCGCTCAG
GTTCCACCCGGACAAGAACGGGGCCCCTCAGGCTCACGAAGCGTTCCAAG
GTAGGGAAACCCTCATCCTCTTTCTTATTGGTTGCGCGTTAAAGCGGGGC
GGGGTTTGAAGAGCGGAGGCGTTTTAATGCTCGTGGTAAGACAAAACAGG
ATCATGATAAACCAGCGGGGTTTCTAGATTTTCTTGAGGCGTGTTTCGCT
GTTCTGTTGTGAACCCCCCGCCTCTCCCTTCTACTTTTTTCCCTCCGAGA
GCAATCGTAGACCATAATAATTATTTCCACTTTTTCTCACCATGCTTAAG
GTGTACGAGGTACTGCTGTTTCATTTGTCGGTTTTCGGGCATGCGGTGGA
AAAGGTAATGTCGTGTACCCGATTCGCTCGTGGTATGTGCCCTACCATCG
TGTATCTGTGTACCCGATTTACTCAGGGGGTTGTACCCTTCTGTAATGTG
GTATAATATGCGACTGTGTTTGCTTGTACCCAACTGGAGTGGGGTGTGTG
TAATCTACTCTCATGTGCTGCTGGTACTATGTACTGTTGTACTGTATGGA
GCATGTGTGTCCTGTCCATGGGTGCCTATACCCGATTCACGTGGGATATG
TACCCTACTGTATTGTTCTACGTAGCCTATGTGCCTGTACTGTACCCGAT
TCAAGTGGGATATATGCTCATTCATCTGATGTAATGTACCCGATTCAAGT
GGGATGTATCTTCATTTATCGGATATAATGTAATACATAGGGTGTTAACG
ATTTCCCAATTTTGGTTTTGAAATCTGGGAAATATTCACCCGAGAGCGCT
GAACCGAAACATAAACCAAAATATGCCAAATGTGCAAATCAAAATATGGG
AAATTTTGGCCATCTAACCAACATTTGAAACCCAATTATTATTTAGGTTT
AGGCCTTGTCAGCGATTGGTCGAATCGGCCCGTTCTATCTCTCCGGGCAC
ACACCACAGGTAGTAGTACTGTACAACAAGAGTAGTAGTACAGAAGGTAG
TACAGTATATTAAAATTAATAATTCATCGTTTTGTCTACTTCCCGTCCGC
CCCTCCTTCCTTTTACAGCGATCGGCACGGCCTTCGCTGTTCTCAGCGAC
AGGGAGAAGAGGGTGCACTACGACCGCTATGGGGACGACGATGGTCCTCA
GGTACAGTAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig119827:195..1458+

>mRNA_H-elongata_contig119827.1529.1 ID=mRNA_H-elongata_contig119827.1529.1|Name=mRNA_H-elongata_contig119827.1529.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig119827:195..1458+ (Himanthalia elongata Himel1 dioecious)
TTATCCACTCGAAGGCAAAGGGCCACTACGCGGTACTCGGGGTGGAAAAG
ATGGCCACGGAAGACCTTATCAAAAAGTCCTATCGAAAACTGGCGCTCAG
GTTCCACCCGGACAAGAACGGGGCCCCTCAGGCTCACGAAGCGTTCCAAG
TTATCCACTCGAAGGCAAAGGGCCACTACGCGGTACTCGGGGTGGAAAAG
ATGGCCACGGAAGACCTTATCAAAAAGTCCTATCGAAAACTGGCGCTCAG
GTTCCACCCGGACAAGAACGGGGCCCCTCAGGCTCACGAAGCGTTCCAAG
CGATCGGCACGGCCTTCGCTGTTCTCAGCGACAGGGAGAAGAGGGTGCAC
TACGACCGCTATGGGGACGACGATGGTCCTCAGGTACAGTAAATAGCGAT
CGGCACGGCCTTCGCTGTTCTCAGCGACAGGGAGAAGAGGGTGCACTACG
ACCGCTATGGGGACGACGATGGTCCTCAGGTACAGTAAATAG
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