mRNA_H-elongata_contig119810.1527.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119810.1527.1
Unique NamemRNA_H-elongata_contig119810.1527.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: D7FZY9_ECTSI (Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.290e-32
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 1
Query:   10 PPPPGSTTLWFDGGSRGNPGLSGAGAVIFDDTGKELYSGYKYLGERKTNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV 264
            P P G +TLWFDGG RGNPG SGAGAVIF+D+ KELYSGYKYLGE KTNNEAEYE ++LGL+A  +L   +LVVKGDSMLVIQQ+
Sbjct:   40 PAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQM 124          
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: A0A6H5L4R0_9PHAE (RNase H type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R0_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.800e-32
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 1
Query:   10 PPPPGSTTLWFDGGSRGNPGLSGAGAVIFDDTGKELYSGYKYLGERKTNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV 264
            P P G +TLWFDGG RGNPG SGAGAVIF+D+ KELYSGYKYLGE KTNNEAEYE ++LGL+A  +L   +LVVKGDSMLVIQQ+
Sbjct:   63 PAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQM 147          
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: A0A7S2KCF7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.950e-23
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   34 LWFDGGSRGNPGLSGAGAVIFDDTGKELYSGYKYLGERKTNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV 264
            L FDGGSRGNPG +GAG V++D+ G E++ G  YLGE  TNNEAEY GLL GL+    +G   +VV+GDS L+++Q+
Sbjct:   13 LQFDGGSRGNPGTAGAGMVLYDEVGHEVWHGRHYLGEHSTNNEAEYTGLLAGLKCARAIGVSNIVVQGDSELIVKQL 89          
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: A0A7S3VAX5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAX5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.070e-21
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   34 LWFDGGSRGNPGLSGAGAVIFD-DTGKELYSGYKYLGERKTNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV 264
            L FDGGSRGNPG++G+G VIFD ++G E++S YKYL E  TNN AEYEGLL GLR  + LG + ++ +GDS LV++QV
Sbjct:  477 LHFDGGSRGNPGVAGSGMVIFDYESGLEVWSAYKYLEEETTNNVAEYEGLLTGLRIAYGLGVRNIIAEGDSTLVVKQV 554          
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: A0A6C0I5H6_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0I5H6_9ZZZZ)

HSP 1 Score: 86.3 bits (212), Expect = 1.000e-19
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   31 TLWFDGGSRGNPGLSGAGAVIFDDTGKELYSGYKYLGERKTNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV 264
            TL+FDG S+GNPG +GAGAV++D  G EL++   + G   TNNEAEY GL+LGL    + G   L V+GDS LVI+Q+
Sbjct:    3 TLFFDGCSKGNPGRAGAGAVLYDPNGAELFAESVFAGYSATNNEAEYTGLILGLNTALKQGITELQVRGDSQLVIRQM 80          
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: A0A7S4LFG3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LFG3_9EUGL)

HSP 1 Score: 85.1 bits (209), Expect = 1.440e-19
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   34 LWFDGGSRGNPGLSGAGAVIFD-DTGKELYSGYKYLGERKTNNEAEYEGLLLGLRATFR--LGAKRLVVKGDSMLVIQQV 264
            L FDGGSRGNPG++GAGAV++D DT   L+ G++++G R TNN AEYEGLLLGL+A       + ++ V+GDS LV+ Q+
Sbjct:   18 LCFDGGSRGNPGVAGAGAVLYDADTDATLWQGHRFVGRRATNNVAEYEGLLLGLQAVVCHFANSAQMTVQGDSHLVLNQM 97          
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: D7FHF8_ECTSI (Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF8_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.630e-19
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   25 STT--LWFDGGSRGNPGLSGAGAVIF--DDTGK--ELYSGYKYLGERKTNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV 264
            STT  L FDGGSRGNPG SG GAV++  D++G+  E++S   ++GE++TNNEAEY GL+ GL A  +LG KRL V+GDS LVIQQ+
Sbjct:  181 STTHLLQFDGGSRGNPGPSGCGAVLYRLDESGEREEVWSSSVWIGEKRTNNEAEYRGLIEGLIAAEKLGIKRLSVEGDSKLVIQQM 266          
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: A0A6T8JIG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JIG0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.760e-19
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   34 LWFDGGSRGNPGLSGAGAVIFDDTGKELYSGYKYLGERKTNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV 264
            L FDGGSRGNPGLSGAG VI++D  +E+++G   L +  TNNEAEY  L+ GL+   RLG + L V+GDS L++ Q+
Sbjct:   39 LQFDGGSRGNPGLSGAGMVIYNDKSQEVWNGSYLLPKEATNNEAEYTALVKGLQHARRLGIRHLAVQGDSNLIVMQI 115          
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: A0A7S1HED2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HED2_HEMAN)

HSP 1 Score: 84.7 bits (208), Expect = 8.620e-19
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   34 LWFDGGSRGNPGLSGAGAVIF-DDTGKELYSGYKYLGERKTNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV 264
            L+FDGGSRGNPGL+G+GAVI+   T +E+++G  ++G  +TNN AEY GLL GL A  ++  K L+VKGDS LVI QV
Sbjct:   27 LYFDGGSRGNPGLAGSGAVIYLAGTTEEVWTGSVFVGICETNNVAEYRGLLSGLSAAEKIRGKSLMVKGDSKLVINQV 104          
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Match: A0A2P6TD28_CHLSO (Ribonuclease H n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TD28_CHLSO)

HSP 1 Score: 87.8 bits (216), Expect = 1.250e-18
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   34 LWFDGGSRGNPGLSGAGAVIFDD-TGKELYSGYKYLGERKTNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV 264
            L FDGGS+GNPG +G GAV++DD +G E+    +Y+G+  TNN+AEY GL+ GL A   LG  RL V+GDSMLVI QV
Sbjct:  140 LEFDGGSKGNPGPAGFGAVLYDDASGVEVARLCQYIGDHNTNNQAEYAGLIAGLAAALELGCSRLKVQGDSMLVINQV 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119810.1527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZY9_ECTSI2.290e-3274.12Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5L4R0_9PHAE5.800e-3274.12RNase H type-1 domain-containing protein n=1 Tax=E... [more]
A0A7S2KCF7_9STRA7.950e-2355.84Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3VAX5_9STRA1.070e-2160.26Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6C0I5H6_9ZZZZ1.000e-1953.85RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A7S4LFG3_9EUGL1.440e-1955.00Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
D7FHF8_ECTSI1.630e-1959.30Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A6T8JIG0_9STRA2.760e-1954.55Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1HED2_HEMAN8.620e-1957.69Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A2P6TD28_CHLSO1.250e-1857.69Ribonuclease H n=1 Tax=Chlorella sorokiniana TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119810contigH-elongata_contig119810:1426..1916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3.1e-27
Seed eggNOG ortholog2880.D7FZY9
EggNOG free text desc.RNase H
EggNOG OGs2S89Z@2759,COG0328@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.779287-CDS-H-elongata_contig119810:1425..15471622929701.779287-CDS-H-elongata_contig119810:1425..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119810 1426..1547 +
1691679124.5543756-CDS-H-elongata_contig119810:1425..15471691679124.5543756-CDS-H-elongata_contig119810:1425..1547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119810 1426..1547 +
1622929701.7953377-CDS-H-elongata_contig119810:1774..19161622929701.7953377-CDS-H-elongata_contig119810:1774..1916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119810 1775..1916 +
1691679124.5779479-CDS-H-elongata_contig119810:1774..19161691679124.5779479-CDS-H-elongata_contig119810:1774..1916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119810 1775..1916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119810.1527.1prot_H-elongata_contig119810.1527.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119810 1426..1916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119810.1527.1

>prot_H-elongata_contig119810.1527.1 ID=prot_H-elongata_contig119810.1527.1|Name=mRNA_H-elongata_contig119810.1527.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
EPGPPPPGSTTLWFDGGSRGNPGLSGAGAVIFDDTGKELYSGYKYLGERK
TNNEAEYEGLLLGLRATFRLGAKRLVVKGDSMLVIQQV
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mRNA from alignment at H-elongata_contig119810:1426..1916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119810.1527.1 ID=mRNA_H-elongata_contig119810.1527.1|Name=mRNA_H-elongata_contig119810.1527.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=491bp|location=Sequence derived from alignment at H-elongata_contig119810:1426..1916+ (Himanthalia elongata Himel1 dioecious)
GAGCCCGGCCCGCCCCCGCCGGGATCAACCACGCTATGGTTCGACGGAGG AAGCAGAGGAAACCCCGGCTTGTCTGGGGCGGGAGCGGTGATTTTCGATG ACACCGGAAAAGAGCTTTACAGGTAAGTGCTCATCCGCCACGGGCAAGGC TAGTAAAATGTTGTATCACCATAGGTCATGGTGCCGCTGCGCTTGCGTGT ATATCGGTGGCTGGAGCGTTTCCAGCATCTCGCGATAACTAATGTTACGC ATCCCGGGTTTTGTAGTAAACGTGTTGCTGTCGTGGACTCACGATGTCGT GACGTCTGGTAACGACTATTATGTTGTCAATGTCTCGACGAGCGTGCAGC GGCTACAAGTACTTGGGGGAGAGAAAGACGAACAACGAGGCCGAATACGA GGGCCTCCTGCTGGGCCTTCGAGCGACTTTCAGGCTCGGAGCAAAACGCC TCGTTGTAAAAGGCGATTCAATGCTTGTGATTCAGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig119810:1426..1916+

>mRNA_H-elongata_contig119810.1527.1 ID=mRNA_H-elongata_contig119810.1527.1|Name=mRNA_H-elongata_contig119810.1527.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig119810:1426..1916+ (Himanthalia elongata Himel1 dioecious)
GAGCCCGGCCCGCCCCCGCCGGGATCAACCACGCTATGGTTCGACGGAGG
AAGCAGAGGAAACCCCGGCTTGTCTGGGGCGGGAGCGGTGATTTTCGATG
ACACCGGAAAAGAGCTTTACAGGAGCCCGGCCCGCCCCCGCCGGGATCAA
CCACGCTATGGTTCGACGGAGGAAGCAGAGGAAACCCCGGCTTGTCTGGG
GCGGGAGCGGTGATTTTCGATGACACCGGAAAAGAGCTTTACAGCGGCTA
CAAGTACTTGGGGGAGAGAAAGACGAACAACGAGGCCGAATACGAGGGCC
TCCTGCTGGGCCTTCGAGCGACTTTCAGGCTCGGAGCAAAACGCCTCGTT
GTAAAAGGCGATTCAATGCTTGTGATTCAGCAGGTGCGGCTACAAGTACT
TGGGGGAGAGAAAGACGAACAACGAGGCCGAATACGAGGGCCTCCTGCTG
GGCCTTCGAGCGACTTTCAGGCTCGGAGCAAAACGCCTCGTTGTAAAAGG
CGATTCAATGCTTGTGATTCAGCAGGTG
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