mRNA_H-elongata_contig11976.1523.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11976.1523.1
Unique NamemRNA_H-elongata_contig11976.1523.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JA97_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA97_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.930e-53
Identity = 103/280 (36.79%), Postives = 166/280 (59.29%), Query Frame = 1
Query:   28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHT 867
            +A+G  Q E + + E Y+PT S + +RML A A   + +LCHFD EQAF+ +++++++Y+ +P+      G + +L K+++GL +A R W+      + A+GFEQ   D CVFR +  G   +++VVHV+DI A   ++   D+F  +L +   +K++G+ R+Y GC   R+++   L I Q  + + +  ++ V  G  +P +SGV  LS  D        EE  +FP+RE  G+LM  AT TRPDIA+AVR VAR+C +P   H  A M I+ + + T
Sbjct:  174 VARGDMQREYIDFGELYAPTVSVSCVRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALAGMIVKLGKSLHGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERSKETGRLTISQQTFTDELAAEYGVAGGKSVPMSSGVK-LSDFDA------DEEATDFPFRELGGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAMRT 445          
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.720e-53
Identity = 107/282 (37.94%), Postives = 168/282 (59.57%), Query Frame = 1
Query:   28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
            +A+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+    +D+E+++++P         + + E+AIYGL ++GR W       +   GFEQ K DPCVFR++VD    +++V++V+DIL    D+   +  A+ L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK   ++PAT G     K        E EE   +P RE +G++M  +T +RPD++ AVR VAR    P   H  A+ KI+ +L  T+D
Sbjct:  806 VARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1079          
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.990e-53
Identity = 107/282 (37.94%), Postives = 168/282 (59.57%), Query Frame = 1
Query:   28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
            +A+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+    +D+E+++++P         + + E+AIYGL ++GR W       +   GFEQ K DPCVFR++VD    +++V++V+DIL    D+   +  A+ L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK   ++PAT G     K        E EE   +P RE +G++M  +T +RPD++ AVR VAR    P   H  A+ KI+ +L  T+D
Sbjct: 1185 VARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1458          
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 5.020e-53
Identity = 107/282 (37.94%), Postives = 168/282 (59.57%), Query Frame = 1
Query:   28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
            +A+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+    +D+E+++++P         + + E+AIYGL ++GR W       +   GFEQ K DPCVFR++VD    +++V++V+DIL    D+   +  A+ L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK   ++PAT G     K        E EE   +P RE +G++M  +T +RPD++ AVR VAR    P   H  A+ KI+ +L  T+D
Sbjct: 1205 VARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1478          
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 5.060e-53
Identity = 107/282 (37.94%), Postives = 168/282 (59.57%), Query Frame = 1
Query:   28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
            +A+GF Q+  V Y    SP PS+ASI+++LA A  K   L H+D +QA+    +D+E+++++P         + + E+AIYGL ++GR W       +   GFEQ K DPCVFR++VD    +++V++V+DIL    D+   +  A+ L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK   ++PAT G     K        E EE   +P RE +G++M  +T +RPD++ AVR VAR    P   H  A+ KI+ +L  T+D
Sbjct: 1348 VARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1621          
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 8.880e-53
Identity = 100/268 (37.31%), Postives = 165/268 (61.57%), Query Frame = 1
Query:   70 EKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
            E Y+PT + +S+R+L A A  ++  L HFD +QAF+ +D+D+++++ +PE   +  G + +L K++YGL +A R W++     +  +GF Q   D CVFR + +G   V +VVHV+DI +  +++   D+F  +L     +K++GD R+Y GC   R+  A  LKI Q  Y E +  +F V+ G ++P   G+  LS+ D+       EE+ ++P+RE +G+LM  AT TRPDIA+AVR VAR+C +P   H +A + I+ +++ T D
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSD 269          
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 188 bits (477), Expect = 9.230e-52
Identity = 108/293 (36.86%), Postives = 170/293 (58.02%), Query Frame = 1
Query:   28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKF---------PGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVK--KGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
            +A+G+ Q  G+ Y E YSP     S+R +LA   A+  E+   D + AFL  ++++E+Y+E+PE  R+             V  L +++YGL +A R WN      + + GFE    DPCV+    +GE E +V ++V+D+L  ++ KA +      + +KF++KD+G AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+K DEP+  E+K ++++ PYR  VG+LM  A  TRPDI+ AV  ++RF ENPG  H  A +K++++LL TKD
Sbjct:  134 VAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKD 424          
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.360e-51
Identity = 104/283 (36.75%), Postives = 168/283 (59.36%), Query Frame = 1
Query:   25 KIAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
            ++A+GF Q+  +      SP PS+ASI+++LA A  K   L H+D +QA+    +D+E+++++P         + + E+AIYGL ++GR W       +   GFEQ K DPCVFR++VD    +++V++V+DIL    D+   +  A+ L +KF  K++G+ +++ GC I R+  A  L+I Q  Y++SMVE+FDVK   ++PAT G     K ++ +  E       +P RE VG++M  +T +RPD++ AVR VAR    P   H  A+ KI+ +L  T+D
Sbjct:  396 RVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 670          
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5KIP2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP2_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.420e-51
Identity = 104/281 (37.01%), Postives = 166/281 (59.07%), Query Frame = 1
Query:   28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTK 870
            +A+G  Q E + + E Y+PT S + +RML A A   + +LCHFD EQAF+ +++++++Y+  P+      G + +L K++YGL +A R W+      + A+GFEQ   D CVFR + DG   +++VVHV+DI A   ++ T D+   +L +   +K++ + R+Y GC   RN++   L I Q  + + +  ++ V  G  +P +SGV  LS  D        E   +FP+RE VG+LM  AT TRPDIA+AVR VAR+C +P   H+ A + I+ +   T+
Sbjct:  691 VARGDMQREYIDFGELYAPTVSVSCVRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRSPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERETCDKLGADLNKSVTVKNLEELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGKSVPMSSGVK-LSDFDA------DEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCPSPKQVHRDAAIDILGYARRTR 963          
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 2.290e-51
Identity = 100/268 (37.31%), Postives = 165/268 (61.57%), Query Frame = 1
Query:   70 EKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
            E Y+PT + +S+R+L A A  ++  L HFD +QAF+ +D+D+++++ +PE   +  G + +L K++YGL +A R W++     +  +GF Q   D CVFR + +G   V +VVHV+DI +  +++   D+F  +L     +K++GD R+Y GC   R+  A  LKI Q  Y E +  +F V+ G ++P   G+  LS+ D+       EE+ ++P+RE +G+LM  AT TRPDIA+AVR VAR+C +P   H +A + I+ +++ T D
Sbjct:  184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSD 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA97_9PHAE1.930e-5336.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE4.720e-5337.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.990e-5337.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE5.020e-5337.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.060e-5337.94Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JLN0_9PHAE8.880e-5337.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q908_9STRA9.230e-5236.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JQN6_9PHAE1.360e-5136.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIP2_9PHAE1.420e-5137.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQB8_9PHAE2.290e-5137.31Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11976contigH-elongata_contig11976:1917..2789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score180.6
Seed ortholog evalue1e-42
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size873
Cds size873
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.3603933-CDS-H-elongata_contig11976:1916..27891622929701.3603933-CDS-H-elongata_contig11976:1916..2789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11976 1917..2789 +
1691679124.4297304-CDS-H-elongata_contig11976:1916..27891691679124.4297304-CDS-H-elongata_contig11976:1916..2789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11976 1917..2789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11976.1523.1prot_H-elongata_contig11976.1523.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11976 1917..2789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11976.1523.1

>prot_H-elongata_contig11976.1523.1 ID=prot_H-elongata_contig11976.1523.1|Name=mRNA_H-elongata_contig11976.1523.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=291bp
PCSGSTGLKIAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELC
HFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWN
NKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKAT
MDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVE
KFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTA
TMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD
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mRNA from alignment at H-elongata_contig11976:1917..2789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11976.1523.1 ID=mRNA_H-elongata_contig11976.1523.1|Name=mRNA_H-elongata_contig11976.1523.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig11976:1917..2789+ (Himanthalia elongata Himel1 dioecious)
CCATGCAGTGGATCGACGGGCCTGAAAATAGCTCAAGGGTTCTGGCAGGT AGAGGGTGTCCACTATACGGAGAAATACTCACCCACGCCATCGACCGCAT CAATCCGGATGCTTTTGGCCACAGCAGCGGCCAAGGACGGTGAGCTGTGC CATTTCGACGCGGAGCAGGCATTCCTGACAACGGACATCGATGATGAATT GTACATTGAGATCCCCGAGAAGTACCGGAAGTTTCCGGGGGCAGTGGGAC GACTGGAGAAGGCCATTTACGGACTCGTACGGGCGGGGAGGTGCTGGAAC AACAAGTTTTGCAGCGAGATGGCAGCGATTGGATTCGAGCAGGGAAAGAC GGATCCGTGCGTGTTCCGTGAGGTCGTTGACGGCGAGGCGGAAGTGGTGG TGGTCGTTCACGTGAACGATATTCTTGCTCACGCCAAAGACAAAGCGACT ATGGATAGATTCGCGACTGAGCTCGGACAAAAGTTTAAATTGAAGGACAT GGGTGACGCCAGATACTACATGGGCTGTCACATTACTAGGAACCGCAAGG CGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGTGGAA AAGTTCGACGTCAAGAAGGGAATCAAGTTACCGGCTACGTCGGGGGTGCC ACCCCTCTCAAAGGTGGACGAGCCACGAAACCCGGAGGAGAAGGAGGAAA TAAGGAATTTTCCATACCGAGAAACAGTGGGGGCGCTTATGCGGACGGCG ACGATGACACGGCCGGACATTGCGAGCGCAGTACGCGTTGTGGCCAGGTT CTGCGAAAACCCTGGGTCGGCGCATAAGAAGGCAGTGATGAAGATTATGC AGCATCTCCTTCACACGAAGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig11976:1917..2789+

>mRNA_H-elongata_contig11976.1523.1 ID=mRNA_H-elongata_contig11976.1523.1|Name=mRNA_H-elongata_contig11976.1523.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at H-elongata_contig11976:1917..2789+ (Himanthalia elongata Himel1 dioecious)
CCATGCAGTGGATCGACGGGCCTGAAAATAGCTCAAGGGTTCTGGCAGGT
AGAGGGTGTCCACTATACGGAGAAATACTCACCCACGCCATCGACCGCAT
CAATCCGGATGCTTTTGGCCACAGCAGCGGCCAAGGACGGTGAGCTGTGC
CATTTCGACGCGGAGCAGGCATTCCTGACAACGGACATCGATGATGAATT
GTACATTGAGATCCCCGAGAAGTACCGGAAGTTTCCGGGGGCAGTGGGAC
GACTGGAGAAGGCCATTTACGGACTCGTACGGGCGGGGAGGTGCTGGAAC
AACAAGTTTTGCAGCGAGATGGCAGCGATTGGATTCGAGCAGGGAAAGAC
GGATCCGTGCGTGTTCCGTGAGGTCGTTGACGGCGAGGCGGAAGTGGTGG
TGGTCGTTCACGTGAACGATATTCTTGCTCACGCCAAAGACAAAGCGACT
ATGGATAGATTCGCGACTGAGCTCGGACAAAAGTTTAAATTGAAGGACAT
GGGTGACGCCAGATACTACATGGGCTGTCACATTACTAGGAACCGCAAGG
CGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGTGGAA
AAGTTCGACGTCAAGAAGGGAATCAAGTTACCGGCTACGTCGGGGGTGCC
ACCCCTCTCAAAGGTGGACGAGCCACGAAACCCGGAGGAGAAGGAGGAAA
TAAGGAATTTTCCATACCGAGAAACAGTGGGGGCGCTTATGCGGACGGCG
ACGATGACACGGCCGGACATTGCGAGCGCAGTACGCGTTGTGGCCAGGTT
CTGCGAAAACCCTGGGTCGGCGCATAAGAAGGCAGTGATGAAGATTATGC
AGCATCTCCTTCACACGAAGGATCCATGCAGTGGATCGACGGGCCTGAAA
ATAGCTCAAGGGTTCTGGCAGGTAGAGGGTGTCCACTATACGGAGAAATA
CTCACCCACGCCATCGACCGCATCAATCCGGATGCTTTTGGCCACAGCAG
CGGCCAAGGACGGTGAGCTGTGCCATTTCGACGCGGAGCAGGCATTCCTG
ACAACGGACATCGATGATGAATTGTACATTGAGATCCCCGAGAAGTACCG
GAAGTTTCCGGGGGCAGTGGGACGACTGGAGAAGGCCATTTACGGACTCG
TACGGGCGGGGAGGTGCTGGAACAACAAGTTTTGCAGCGAGATGGCAGCG
ATTGGATTCGAGCAGGGAAAGACGGATCCGTGCGTGTTCCGTGAGGTCGT
TGACGGCGAGGCGGAAGTGGTGGTGGTCGTTCACGTGAACGATATTCTTG
CTCACGCCAAAGACAAAGCGACTATGGATAGATTCGCGACTGAGCTCGGA
CAAAAGTTTAAATTGAAGGACATGGGTGACGCCAGATACTACATGGGCTG
TCACATTACTAGGAACCGCAAGGCGCGCGAGCTGAAGATCGACCAACACT
TGTACGTGGAGTCGATGGTGGAAAAGTTCGACGTCAAGAAGGGAATCAAG
TTACCGGCTACGTCGGGGGTGCCACCCCTCTCAAAGGTGGACGAGCCACG
AAACCCGGAGGAGAAGGAGGAAATAAGGAATTTTCCATACCGAGAAACAG
TGGGGGCGCTTATGCGGACGGCGACGATGACACGGCCGGACATTGCGAGC
GCAGTACGCGTTGTGGCCAGGTTCTGCGAAAACCCTGGGTCGGCGCATAA
GAAGGCAGTGATGAAGATTATGCAGCATCTCCTTCACACGAAGGAT
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