mRNA_H-elongata_contig11976.1523.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JA97_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA97_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.930e-53 Identity = 103/280 (36.79%), Postives = 166/280 (59.29%), Query Frame = 1
Query: 28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHT 867
+A+G Q E + + E Y+PT S + +RML A A + +LCHFD EQAF+ +++++++Y+ +P+ G + +L K+++GL +A R W+ + A+GFEQ D CVFR + G +++VVHV+DI A ++ D+F +L + +K++G+ R+Y GC R+++ L I Q + + + ++ V G +P +SGV LS D EE +FP+RE G+LM AT TRPDIA+AVR VAR+C +P H A M I+ + + T
Sbjct: 174 VARGDMQREYIDFGELYAPTVSVSCVRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALAGMIVKLGKSLHGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERSKETGRLTISQQTFTDELAAEYGVAGGKSVPMSSGVK-LSDFDA------DEEATDFPFRELGGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAMRT 445
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 196 bits (498), Expect = 4.720e-53 Identity = 107/282 (37.94%), Postives = 168/282 (59.57%), Query Frame = 1
Query: 28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
+A+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ +D+E+++++P + + E+AIYGL ++GR W + GFEQ K DPCVFR++VD +++V++V+DIL D+ + A+ L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDVK ++PAT G K E EE +P RE +G++M +T +RPD++ AVR VAR P H A+ KI+ +L T+D
Sbjct: 806 VARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1079
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 196 bits (498), Expect = 4.990e-53 Identity = 107/282 (37.94%), Postives = 168/282 (59.57%), Query Frame = 1
Query: 28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
+A+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ +D+E+++++P + + E+AIYGL ++GR W + GFEQ K DPCVFR++VD +++V++V+DIL D+ + A+ L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDVK ++PAT G K E EE +P RE +G++M +T +RPD++ AVR VAR P H A+ KI+ +L T+D
Sbjct: 1185 VARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1458
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 196 bits (498), Expect = 5.020e-53 Identity = 107/282 (37.94%), Postives = 168/282 (59.57%), Query Frame = 1
Query: 28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
+A+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ +D+E+++++P + + E+AIYGL ++GR W + GFEQ K DPCVFR++VD +++V++V+DIL D+ + A+ L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDVK ++PAT G K E EE +P RE +G++M +T +RPD++ AVR VAR P H A+ KI+ +L T+D
Sbjct: 1205 VARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1478
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 196 bits (498), Expect = 5.060e-53 Identity = 107/282 (37.94%), Postives = 168/282 (59.57%), Query Frame = 1
Query: 28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
+A+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ +D+E+++++P + + E+AIYGL ++GR W + GFEQ K DPCVFR++VD +++V++V+DIL D+ + A+ L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDVK ++PAT G K E EE +P RE +G++M +T +RPD++ AVR VAR P H A+ KI+ +L T+D
Sbjct: 1348 VARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1621
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 187 bits (475), Expect = 8.880e-53 Identity = 100/268 (37.31%), Postives = 165/268 (61.57%), Query Frame = 1
Query: 70 EKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
E Y+PT + +S+R+L A A ++ L HFD +QAF+ +D+D+++++ +PE + G + +L K++YGL +A R W++ + +GF Q D CVFR + +G V +VVHV+DI + +++ D+F +L +K++GD R+Y GC R+ A LKI Q Y E + +F V+ G ++P G+ LS+ D+ EE+ ++P+RE +G+LM AT TRPDIA+AVR VAR+C +P H +A + I+ +++ T D
Sbjct: 10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSD 269
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 188 bits (477), Expect = 9.230e-52 Identity = 108/293 (36.86%), Postives = 170/293 (58.02%), Query Frame = 1
Query: 28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKF---------PGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVK--KGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
+A+G+ Q G+ Y E YSP S+R +LA A+ E+ D + AFL ++++E+Y+E+PE R+ V L +++YGL +A R WN + + GFE DPCV+ +GE E +V ++V+D+L ++ KA + + +KF++KD+G AR+ +G I + + R L I Q Y ES+++KF + K P GV L+K DEP+ E+K ++++ PYR VG+LM A TRPDI+ AV ++RF ENPG H A +K++++LL TKD
Sbjct: 134 VAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKD 424
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 191 bits (484), Expect = 1.360e-51 Identity = 104/283 (36.75%), Postives = 168/283 (59.36%), Query Frame = 1
Query: 25 KIAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
++A+GF Q+ + SP PS+ASI+++LA A K L H+D +QA+ +D+E+++++P + + E+AIYGL ++GR W + GFEQ K DPCVFR++VD +++V++V+DIL D+ + A+ L +KF K++G+ +++ GC I R+ A L+I Q Y++SMVE+FDVK ++PAT G K ++ + E +P RE VG++M +T +RPD++ AVR VAR P H A+ KI+ +L T+D
Sbjct: 396 RVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 670
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5KIP2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP2_9PHAE) HSP 1 Score: 191 bits (486), Expect = 1.420e-51 Identity = 104/281 (37.01%), Postives = 166/281 (59.07%), Query Frame = 1
Query: 28 IAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTK 870
+A+G Q E + + E Y+PT S + +RML A A + +LCHFD EQAF+ +++++++Y+ P+ G + +L K++YGL +A R W+ + A+GFEQ D CVFR + DG +++VVHV+DI A ++ T D+ +L + +K++ + R+Y GC RN++ L I Q + + + ++ V G +P +SGV LS D E +FP+RE VG+LM AT TRPDIA+AVR VAR+C +P H+ A + I+ + T+
Sbjct: 691 VARGDMQREYIDFGELYAPTVSVSCVRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRSPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERETCDKLGADLNKSVTVKNLEELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGKSVPMSSGVK-LSDFDA------DEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCPSPKQVHRDAAIDILGYARRTR 963
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 187 bits (475), Expect = 2.290e-51 Identity = 100/268 (37.31%), Postives = 165/268 (61.57%), Query Frame = 1
Query: 70 EKYSPTPSTASIRMLLATAAAKDGELCHFDAEQAFLTTDIDDELYIEIPEKYRKFPGAVGRLEKAIYGLVRAGRCWNNKFCSEMAAIGFEQGKTDPCVFREVVDGEAEVVVVVHVNDILAHAKDKATMDRFATELGQKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVEKFDVKKGIKLPATSGVPPLSKVDEPRNPEEKEEIRNFPYRETVGALMRTATMTRPDIASAVRVVARFCENPGSAHKKAVMKIMQHLLHTKD 873
E Y+PT + +S+R+L A A ++ L HFD +QAF+ +D+D+++++ +PE + G + +L K++YGL +A R W++ + +GF Q D CVFR + +G V +VVHV+DI + +++ D+F +L +K++GD R+Y GC R+ A LKI Q Y E + +F V+ G ++P G+ LS+ D+ EE+ ++P+RE +G+LM AT TRPDIA+AVR VAR+C +P H +A + I+ +++ T D
Sbjct: 184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSD 443 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11976.1523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11976.1523.1 >prot_H-elongata_contig11976.1523.1 ID=prot_H-elongata_contig11976.1523.1|Name=mRNA_H-elongata_contig11976.1523.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=291bp PCSGSTGLKIAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAAAKDGELCback to top mRNA from alignment at H-elongata_contig11976:1917..2789+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11976.1523.1 ID=mRNA_H-elongata_contig11976.1523.1|Name=mRNA_H-elongata_contig11976.1523.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig11976:1917..2789+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11976:1917..2789+ >mRNA_H-elongata_contig11976.1523.1 ID=mRNA_H-elongata_contig11976.1523.1|Name=mRNA_H-elongata_contig11976.1523.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at H-elongata_contig11976:1917..2789+ (Himanthalia elongata Himel1 dioecious)back to top |