mRNA_H-elongata_contig119738.1521.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig119738.1521.1
Unique Name	mRNA_H-elongata_contig119738.1521.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: D8LCS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 9.000e-14
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGHH 111
            +++CPNGH YGVGDCGMLN  G CPECGL IGG G+H
Sbjct:  231 YHKCPNGHVYGVGDCGMLNGRGVCPECGLAIGGPGYH 267

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: A0A1I7ZJG1_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7ZJG1_9BILA)

HSP 1 Score: 63.9 bits (154), Expect = 6.630e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGH 108
            WY+CPNGH YG+GDCG  +  G CP+CG  IGG  H
Sbjct:   63 WYKCPNGHLYGIGDCGRADVVGTCPDCGAEIGGTRH 98

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: A0A1B9H8H0_9TREE (Uncharacterized protein n=2 Tax=Kwoniella heveanensis TaxID=89924 RepID=A0A1B9H8H0_9TREE)

HSP 1 Score: 66.2 bits (160), Expect = 1.160e-11
Identity = 25/37 (67.57%), Postives = 26/37 (70.27%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGHH 111
            W +CPNGHAY VGDCG  N  G CPECG  IGG G H
Sbjct: 2189 WMKCPNGHAYAVGDCGQANEGGTCPECGATIGGGGFH 2225

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: A0A7M7P6U3_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7P6U3_STRPU)

HSP 1 Score: 63.5 bits (153), Expect = 1.030e-10
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGH 108
            WY+CP GH Y +G+CG     G+CPECGL IGG GH
Sbjct: 3174 WYKCPKGHVYAIGECGGATQTGKCPECGLGIGGTGH 3209

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: A0A1I8A7P8_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8A7P8_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-10
Identity = 22/36 (61.11%), Postives = 25/36 (69.44%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGH 108
            WY+CPNGH YG+GDCG     G CP+CG  IGG  H
Sbjct:  404 WYKCPNGHLYGIGDCGRAEVVGTCPDCGAEIGGTQH 439

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: A0A1Y2GYA4_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GYA4_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 1.930e-10
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGHH 111
            WYRCPNGH Y +G+CGM     RCPECG  +GG GHH
Sbjct: 2113 WYRCPNGHTYVIGECGMAMEQSRCPECGANVGG-GHH 2148

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: A0A8K1C7X4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7X4_PYTOL)

HSP 1 Score: 62.0 bits (149), Expect = 3.600e-10
Identity = 23/36 (63.89%), Postives = 25/36 (69.44%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGH 108
            WYRCPNGH Y VG+CGM      CPECG V+GG  H
Sbjct: 1913 WYRCPNGHPYSVGECGMPMQESSCPECGAVVGGSDH 1948

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: A0A5N5PEC3_9PEZI (C3H1-type domain-containing protein n=1 Tax=Coniochaeta sp. 2T2.1 TaxID=1571157 RepID=A0A5N5PEC3_9PEZI)

HSP 1 Score: 61.6 bits (148), Expect = 4.930e-10
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGH 108
            WY+CPNGH + +G+CGM     RCPECG  IGG GH
Sbjct: 1891 WYKCPNGHTFAIGECGMPMELARCPECGSGIGGQGH 1926

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: A0A0G4IMB1_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMB1_PLABS)

HSP 1 Score: 61.2 bits (147), Expect = 6.730e-10
Identity = 23/36 (63.89%), Postives = 24/36 (66.67%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGH 108
            WYRCPNGH Y VG+CGM      CPECG  IGG  H
Sbjct: 2013 WYRCPNGHMYTVGECGMAMQRSTCPECGATIGGADH 2048

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BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Match: A0A6A0HCV0_HYAAZ (Uncharacterized protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0HCV0_HYAAZ)

HSP 1 Score: 60.1 bits (144), Expect = 8.920e-10
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 1

Query:    1 WYRCPNGHAYGVGDCGMLNAAGRCPE--CGLVIGGLGHH 111
            WY+CP GH Y +GDCG+ N   RCPE  CG VIGG  HH
Sbjct:   15 WYKCPRGHVYAIGDCGLANQVSRCPEAGCGAVIGG--HH 51

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot

BLAST of mRNA_H-elongata_contig119738.1521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LCS0_ECTSI	9.000e-14	72.97	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A1I7ZJG1_9BILA	6.630e-12	61.11	Uncharacterized protein n=1 Tax=Steinernema glaser...	[more]
A0A1B9H8H0_9TREE	1.160e-11	67.57	Uncharacterized protein n=2 Tax=Kwoniella heveanen...	[more]
A0A7M7P6U3_STRPU	1.030e-10	61.11	Uncharacterized protein n=1 Tax=Strongylocentrotus...	[more]
A0A1I8A7P8_9BILA	1.040e-10	61.11	Uncharacterized protein n=1 Tax=Steinernema glaser...	[more]
A0A1Y2GYA4_9FUNG	1.930e-10	64.86	Uncharacterized protein n=1 Tax=Lobosporangium tra...	[more]
A0A8K1C7X4_PYTOL	3.600e-10	63.89	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A5N5PEC3_9PEZI	4.930e-10	61.11	C3H1-type domain-containing protein n=1 Tax=Conioc...	[more]
A0A0G4IMB1_PLABS	6.730e-10	63.89	Uncharacterized protein n=2 Tax=Plasmodiophora bra...	[more]
A0A6A0HCV0_HYAAZ	8.920e-10	61.54	Uncharacterized protein n=1 Tax=Hyalella azteca Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig119738	contig	H-elongata_contig119738:710..823 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	62.8
Seed ortholog evalue	4.1e-08
Seed eggNOG ortholog	400682.PAC_15716902
Preferred name	ZNFX1
KEGG ko	ko:K21626
GOs	GO:0000981,GO:0003674,GO:0003700,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.	NFX1-type zinc finger-containing protein
EggNOG OGs	38E0G@33154,3BCP1@33208,COG1112@1,KOG1807@2759
COG Functional cat.	L
Best tax level	Metazoa
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03000
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	114
Cds size	114
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929701.2061617-CDS-H-elongata_contig119738:709..823	1622929701.2061617-CDS-H-elongata_contig119738:709..823	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig119738 710..823 -
1691679124.3756402-CDS-H-elongata_contig119738:709..823	1691679124.3756402-CDS-H-elongata_contig119738:709..823	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig119738 710..823 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig119738.1521.1	prot_H-elongata_contig119738.1521.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig119738 710..823 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig119738:710..823-
coding sequence from alignment at H-elongata_contig119738:710..823-

protein sequence of mRNA_H-elongata_contig119738.1521.1

>prot_H-elongata_contig119738.1521.1 ID=prot_H-elongata_contig119738.1521.1|Name=mRNA_H-elongata_contig119738.1521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
WYRCPNGHAYGVGDCGMLNAAGRCPECGLVIGGLGHH*

mRNA from alignment at H-elongata_contig119738:710..823-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig119738.1521.1 ID=mRNA_H-elongata_contig119738.1521.1|Name=mRNA_H-elongata_contig119738.1521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig119738:710..823- (Himanthalia elongata Himel1 dioecious)
TGGTACCGGTGCCCAAATGGCCACGCTTACGGGGTGGGGGACTGCGGCAT
GCTTAACGCCGCTGGGAGATGCCCCGAATGCGGATTAGTTATCGGAGGCC
TGGGCCATCACTAG

Coding sequence (CDS) from alignment at H-elongata_contig119738:710..823-

>mRNA_H-elongata_contig119738.1521.1 ID=mRNA_H-elongata_contig119738.1521.1|Name=mRNA_H-elongata_contig119738.1521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig119738:710..823- (Himanthalia elongata Himel1 dioecious)
TGGTACCGGTGCCCAAATGGCCACGCTTACGGGGTGGGGGACTGCGGCAT
GCTTAACGCCGCTGGGAGATGCCCCGAATGCGGATTAGTTATCGGAGGCC
TGGGCCATCACTAGTGGTACCGGTGCCCAAATGGCCACGCTTACGGGGTG
GGGGACTGCGGCATGCTTAACGCCGCTGGGAGATGCCCCGAATGCGGATT
AGTTATCGGAGGCCTGGGCCATCACTAG