mRNA_H-elongata_contig119698.1518.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119698.1518.1
Unique NamemRNA_H-elongata_contig119698.1518.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: D8LB19_ECTSI (Similar to RING finger protein 122 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB19_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 2.780e-59
Identity = 118/193 (61.14%), Postives = 142/193 (73.58%), Query Frame = 1
Query:    1 DPNQAAAQRLAKLEQDALARGDELLALSLAAREEARVERHASRGRVHRRSRRSS------PLVLNAAT---AAAVATGGQVSDAVLALQFQDIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDMQPVVPDSP 552
            D ++AAA+R AK EQ+A AR DELLAL LAAREEA  ER ASR RV RRS  SS      P  ++  +   A A A GG +SDAV ALQFQDID NDFETLL LDE GG GGR C GG+GL+++A+E +L++GKAA   LEE+CA+C+  F LG+EI+ LPC H FH  CIRKWLLMRNRCPT ++ V+PDSP
Sbjct:  773 DEDEAAARRFAKQEQEAQAREDELLALRLAAREEAGAERRASRRRVQRRSNASSARRNSIPGYISPDSNHPAVASAAGGNLSDAVRALQFQDIDENDFETLLALDEAGGEGGRCCAGGKGLADEAMEAVLQTGKAAGARLEESCAVCMEEFGLGDEISVLPCLHAFHGACIRKWLLMRNRCPTCLKAVIPDSP 965          
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A6H5L8B3_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B3_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 4.440e-42
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 1
Query:  214 VSDAVLALQFQDIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDMQPVVPDSP 552
            VSDA+ ALQFQDID NDFETLL LDE GG GGR C GG+GL+E+A+E  L++G AA   LEE+CA+C+  F LG+EI+ LPC H FH  CIRKWLLMRNRCPT ++ V+PDSP
Sbjct:  856 VSDAIRALQFQDIDENDFETLLALDEAGGEGGRCCAGGKGLAEEAMEAALQAGTAAGARLEESCAVCMEEFGLGDEISVLPCLHAFHGACIRKWLLMRNRCPTCLKAVIPDSP 968          
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A6U1H468_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1H468_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 3.490e-10
Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 1
Query:  241 FQDIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEEN--CAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCP 519
            + D+D   +E LL + E  G   R      G S+ A++ L     +  G  EE   CA+C + FE G++ ATLPC H +H  CI +WL +   CP
Sbjct:  167 YPDVDQMSYEALLAVGEMAGHVSR------GASDAALKTLKMGCYSRCGSAEEEEQCAVCRMEFETGDDTATLPCSHFYHPDCINQWLKINKACP 255          
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A1Y1WMH7_9FUNG (RING-type domain-containing protein (Fragment) n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WMH7_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 3.830e-10
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  337 SEKAVEDL-LRSGKAAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCP 519
            SE A+++L LR+      G +E+C+IC   ++ GEE+  LPC+H FHD+CI+ WL +   CP
Sbjct:   34 SEDAIKELRLRAVTGEEAGRKEDCSICQDEYKQGEEVVELPCKHLFHDECIKHWLNVNGTCP 95          
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A075B2Q6_ROZAC (RING-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B2Q6_ROZAC)

HSP 1 Score: 65.5 bits (158), Expect = 2.080e-9
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  328 RGLSEKAVEDLLRSGKAAAGGLEENC---------AICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDMQPV 537
            RG  +K +++L +  K   G L E C         +ICLV +E+GE+I  LPC+H FH KC+  WL M   CP  +QP+
Sbjct:  209 RGADQKHIDNLPKC-KFKQGQLPEGCEIKEEDNLCSICLVNYEIGEDIRFLPCKHHFHIKCVDTWLKMNKTCPLCVQPI 286          
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: UPI00109F7253 (E3 ubiquitin-protein ligase MBR2 isoform X2 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F7253)

HSP 1 Score: 64.7 bits (156), Expect = 5.710e-9
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 1
Query:  247 DIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCP 519
            DID   +E L+ L E+   G  + G   G   K +   + S        E +C ICL  ++ G+ I  L CRH FH +CI+KWLL++N CP
Sbjct:  279 DIDNMSYEELVDLGER--IGNVSTGLSGGDMAKCLTSAIYSSGVIQDVDEGSCVICLEEYKEGQSIGRLNCRHDFHSRCIKKWLLIKNACP 367          
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: UPI000C1D6D6B (E3 ubiquitin-protein ligase MBR2-like isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D6D6B)

HSP 1 Score: 64.7 bits (156), Expect = 7.020e-9
Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = 1
Query:  247 DIDANDFETLLTLDEQGGFGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEEN---CAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCP 519
            D+D   +E LL L+EQ G          GLSE+ +   +   K    G   N   C IC   +  G++I  L C+H FH KCI++WL+++N CP
Sbjct:  619 DVDNMSYEELLALEEQIG------NVSTGLSEEKILGSMEHRKYEPFGFSSNFEPCCICQEDYIAGDDIGILDCKHEFHTKCIKQWLMLKNLCP 706          
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A835G1A5_9POAL (RING-type domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835G1A5_9POAL)

HSP 1 Score: 63.2 bits (152), Expect = 8.760e-9
Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 1
Query:  295 GGFGG--RTCGGGRGLSEKAVEDLLRSGKAAAGGLEENCAICLVGFELGEEIATLPC--RHTFHDKCIRKWLLMRNRCPTDMQP 534
            GGFGG   +     GL ++       +    AGG    CAICL GF+ GEE++ +PC  RH FH  CI KWL+  N CP  + P
Sbjct:  151 GGFGGVPASAAAMAGLDKQTFR---ATAGGCAGGGGTGCAICLEGFDDGEEVSVMPCSHRHGFHPVCITKWLIRSNMCPVCLPP 231          
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A7E4VT43_PANRE (RING-type domain-containing protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4VT43_PANRE)

HSP 1 Score: 62.8 bits (151), Expect = 9.170e-9
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1
Query:  394 EENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDMQPV 537
            E+ CAIC++ FEL ++I  LPCRHT+H +CI  WL     CP+ M+PV
Sbjct:  132 EDECAICMIDFELEDQIRRLPCRHTYHVQCIDDWLQRSFTCPSCMEPV 179          
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Match: A0A7S2IHT6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2IHT6_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 1.590e-8
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1
Query:  376 AAAGGLEENCAICLVGFELGEEIATLPCRHTFHDKCIRKWLLMRNRCPTDM 528
            A A G    C +C+  F+ G+E+A LPC H+FH +CI  WL   NRCP  M
Sbjct:  115 AGAEGFNTRCVVCIADFDEGDELARLPCAHSFHCQCIEPWLRKNNRCPLCM 165          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119698.1518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB19_ECTSI2.780e-5961.14Similar to RING finger protein 122 n=1 Tax=Ectocar... [more]
A0A6H5L8B3_9PHAE4.440e-4266.37RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6U1H468_9CHLO3.490e-1035.79Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A1Y1WMH7_9FUNG3.830e-1043.55RING-type domain-containing protein (Fragment) n=1... [more]
A0A075B2Q6_ROZAC2.080e-940.51RING-type domain-containing protein n=1 Tax=Rozell... [more]
UPI00109F72535.710e-937.36E3 ubiquitin-protein ligase MBR2 isoform X2 n=2 Ta... [more]
UPI000C1D6D6B7.020e-936.17E3 ubiquitin-protein ligase MBR2-like isoform X1 n... [more]
A0A835G1A5_9POAL8.760e-941.67RING-type domain-containing protein n=1 Tax=Digita... [more]
A0A7E4VT43_PANRE9.170e-952.08RING-type domain-containing protein n=1 Tax=Panagr... [more]
A0A7S2IHT6_9DINO1.590e-847.06Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119698contigH-elongata_contig119698:389..1312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue4.5e-52
Seed eggNOG ortholog2880.D8LB19
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-27_005580.1
Exons2
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.9704678-CDS-H-elongata_contig119698:388..8291622929700.9704678-CDS-H-elongata_contig119698:388..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119698 389..829 +
1691679124.2826712-CDS-H-elongata_contig119698:388..8291691679124.2826712-CDS-H-elongata_contig119698:388..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119698 389..829 +
1622929700.9947827-CDS-H-elongata_contig119698:1201..13121622929700.9947827-CDS-H-elongata_contig119698:1201..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119698 1202..1312 +
1691679124.2918537-CDS-H-elongata_contig119698:1201..13121691679124.2918537-CDS-H-elongata_contig119698:1201..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119698 1202..1312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119698.1518.1prot_H-elongata_contig119698.1518.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119698 389..1312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119698.1518.1

>prot_H-elongata_contig119698.1518.1 ID=prot_H-elongata_contig119698.1518.1|Name=mRNA_H-elongata_contig119698.1518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp
DPNQAAAQRLAKLEQDALARGDELLALSLAAREEARVERHASRGRVHRRS
RRSSPLVLNAATAAAVATGGQVSDAVLALQFQDIDANDFETLLTLDEQGG
FGGRTCGGGRGLSEKAVEDLLRSGKAAAGGLEENCAICLVGFELGEEIAT
LPCRHTFHDKCIRKWLLMRNRCPTDMQPVVPDSP
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mRNA from alignment at H-elongata_contig119698:389..1312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119698.1518.1 ID=mRNA_H-elongata_contig119698.1518.1|Name=mRNA_H-elongata_contig119698.1518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=924bp|location=Sequence derived from alignment at H-elongata_contig119698:389..1312+ (Himanthalia elongata Himel1 dioecious)
GATCCGAACCAGGCCGCCGCTCAGAGGCTGGCAAAGCTGGAGCAAGATGC CCTGGCAAGGGGGGACGAGCTCCTGGCCCTCAGTCTGGCCGCACGGGAAG AGGCCCGAGTCGAGCGCCACGCGTCGCGCGGCCGTGTGCATCGCCGGAGC CGACGGAGTTCACCTCTAGTACTGAACGCGGCCACAGCGGCAGCAGTCGC AACGGGTGGCCAAGTGAGCGATGCTGTTCTTGCCCTCCAGTTCCAGGATA TCGACGCAAACGATTTTGAAACCCTGCTGACCCTGGACGAGCAGGGAGGC TTCGGGGGCAGGACTTGCGGGGGCGGGCGGGGGCTGAGCGAGAAAGCCGT GGAGGACTTGCTTCGGTCAGGAAAGGCTGCGGCTGGTGGACTTGAGGAGA ACTGCGCTATCTGCCTAGTTGGCTTCGAACTGGGAGAGGAGGTGCGGCCG CGGGGGAGTCCGCCAACATGCCGCGCGTTTTCTTCTCCCTGGTTTCGTTT CAAAATCTAATGATTGTTTCGCGGATCCCCGTAGCACGCTTCGTATTGCA CGCCGTAGAATTGGTACTGTAATAAGGCATGACTTGACTCTAACAAATTG TTTCCTGTTGTTTTTGTGATGTTTTTTGGCGAGCTTTCCCACTACTTTTT TTTACATAAGCTTTTTCGACAGAGGCTTAGAAATGAAATACTCTACCCCG AAGGTTAGACCGCCTTTGAAGGACCCGTCGGAGCCGATCCCCCGCTTGAA TCAATCTACACATTTCCATCGCTTCTCACGCCTTTCTATGCCCACTCCGT ACTTGGTACGCAGATCGCGACTCTTCCCTGCCGTCATACCTTTCATGACA AGTGCATCCGAAAATGGTTGCTCATGCGCAACCGTTGCCCCACCGATATG CAGCCAGTGGTGCCGGACAGCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig119698:389..1312+

>mRNA_H-elongata_contig119698.1518.1 ID=mRNA_H-elongata_contig119698.1518.1|Name=mRNA_H-elongata_contig119698.1518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig119698:389..1312+ (Himanthalia elongata Himel1 dioecious)
GATCCGAACCAGGCCGCCGCTCAGAGGCTGGCAAAGCTGGAGCAAGATGC
CCTGGCAAGGGGGGACGAGCTCCTGGCCCTCAGTCTGGCCGCACGGGAAG
AGGCCCGAGTCGAGCGCCACGCGTCGCGCGGCCGTGTGCATCGCCGGAGC
CGACGGAGTTCACCTCTAGTACTGAACGCGGCCACAGCGGCAGCAGTCGC
AACGGGTGGCCAAGTGAGCGATGCTGTTCTTGCCCTCCAGTTCCAGGATA
TCGACGCAAACGATTTTGAAACCCTGCTGACCCTGGACGAGCAGGGAGGC
TTCGGGGGCAGGACTTGCGGGGGCGGGCGGGGGCTGAGCGAGAAAGCCGT
GGAGGACTTGCTTCGGTCAGGAAAGGCTGCGGCTGGTGGACTTGAGGAGA
ACTGCGCTATCTGCCTAGTTGGCTTCGAACTGGGAGAGGAGGATCCGAAC
CAGGCCGCCGCTCAGAGGCTGGCAAAGCTGGAGCAAGATGCCCTGGCAAG
GGGGGACGAGCTCCTGGCCCTCAGTCTGGCCGCACGGGAAGAGGCCCGAG
TCGAGCGCCACGCGTCGCGCGGCCGTGTGCATCGCCGGAGCCGACGGAGT
TCACCTCTAGTACTGAACGCGGCCACAGCGGCAGCAGTCGCAACGGGTGG
CCAAGTGAGCGATGCTGTTCTTGCCCTCCAGTTCCAGGATATCGACGCAA
ACGATTTTGAAACCCTGCTGACCCTGGACGAGCAGGGAGGCTTCGGGGGC
AGGACTTGCGGGGGCGGGCGGGGGCTGAGCGAGAAAGCCGTGGAGGACTT
GCTTCGGTCAGGAAAGGCTGCGGCTGGTGGACTTGAGGAGAACTGCGCTA
TCTGCCTAGTTGGCTTCGAACTGGGAGAGGAGATCGCGACTCTTCCCTGC
CGTCATACCTTTCATGACAAGTGCATCCGAAAATGGTTGCTCATGCGCAA
CCGTTGCCCCACCGATATGCAGCCAGTGGTGCCGGACAGCCCGATCGCGA
CTCTTCCCTGCCGTCATACCTTTCATGACAAGTGCATCCGAAAATGGTTG
CTCATGCGCAACCGTTGCCCCACCGATATGCAGCCAGTGGTGCCGGACAG
CCCG
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