mRNA_H-elongata_contig119685.1517.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119685.1517.1
Unique NamemRNA_H-elongata_contig119685.1517.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 1.950e-81
Identity = 135/241 (56.02%), Postives = 168/241 (69.71%), Query Frame = 1
Query:   19 SLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKETCDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
            +LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV  R  Y+  KRKLALR P W RV+  +L  EE    +G+K      V H GQDES+YKAYAREG EWV++GVR LRKKTEGP EMVS FQDER GFGLPL++  L+ VNA RK++G + L  SPGLRF    KN++G+WG+ EF+EQ         V E   Q V E+DHS+GHT+  ++GLHV NMNVK+GGKQK L D+ M
Sbjct:  378 NLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLLPEELQRLDGIKGK----VRHIGQDESLYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVM 614          
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 5.380e-76
Identity = 138/312 (44.23%), Postives = 176/312 (56.41%), Query Frame = 1
Query:   19 SLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKET-----------------------------------------------------------------------CDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
            +LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV  R  Y+  KRKLALR P W RV+  +L  EE    +G+K                                                                         C++ V H GQDES+YKAYAREG EWV++GVR LRKKTEGP EMVS FQDER GFGLPL++  L+ VNA RK++G + L  SPGLRF    KN++G+WG+ EF+EQ  D +D ++V E   Q V E+DHS+GHT+  ++GLHV NMNVK+GGKQK L D+ M
Sbjct:  454 NLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAKDFCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQMEDALDVLDVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVM 765          
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.720e-72
Identity = 148/372 (39.78%), Postives = 188/372 (50.54%), Query Frame = 1
Query:    1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKE-------------------------------------------------TC-------------------------------------------------------DQA-------------------VYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGH--KPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
            L  Y ++LP+SM+T + WM +LGCK +R  +S+YTD HE+ +VV  R +Y+ ++RK+ALR P W RV+ ++L +EE    + LK                                                  TC                                                       DQA                   V+H GQDES YKAYAREG EWVIRGVR LRKKTEGP EMVSGFQDER GFGLP+S+A+L  VNA R +EG+  KPL  SPGLRF    K ++G+WG+ +FEEQ  DVMD +E ++   Q V EVDHS+GH K  ++GLHV+NMNVK+GGKQK L DS M
Sbjct:   54 LHAYQVNLPVSMSTTHSWMIRLGCKYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLLRDDGSVDNFDKLRAALDAARTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPEGGDYSVRFDQAAAAQCEHFHPPNKCRCGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKPLTRSPGLRFLEYGKGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVM 425          
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 2.600e-72
Identity = 132/290 (45.52%), Postives = 169/290 (58.28%), Query Frame = 1
Query:    1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKETCDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQV-------------------------------------------EEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
            L  Y ++LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV  R  Y+  KRKLALR P W RV+  +L  EE    +G+K     A     +DES+YKAYA EG +WV++GVR +RKKTEGP EMVSGFQDER GFGLPL++  L+ VNA RK++G + L  SPGLRF    KN++G+WG+ EF+EQ         V E   Q V                                            E+DHS+GHT+  ++GLHV NMNVK+GGKQK L D+ M
Sbjct:  203 LLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIK---GPAKDFCAEDESVYKAYAHEGKKWVVQGVRGIRKKTEGPGEMVSGFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVM 489          
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 3.150e-69
Identity = 142/356 (39.89%), Postives = 184/356 (51.69%), Query Frame = 1
Query:    1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKET-------------------------------------------------------------------------CDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGH--KPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAG----------------------------------HTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
            L  Y ++LP+SM+T + WM +LGC+ +R  +S+YTD HE+ +VV  R +Y+ ++RK+ALR P W RV+ ++L +EE    + LK                                                                           C + V+H GQDES YKAYAREG EWVIRGVR LRK+TEGP EMVSGFQDER GFGLP+S+A+L  VNA R +EG+  K L  SPGLRF    K ++G WG+ +FEEQ  DVMD +E ++  KQ V EVDHS+G                                  H K  ++GLHV+NMNVK+GGKQK L DS M
Sbjct:  389 LHAYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLLRDDGSVDNFDKLRAALGPEGGDYSVRFDQAAAAQCEYFHPTNKCRCGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKRTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKTLTRSPGLRFLEYGKGKDGCWGYDQFEEQVEDVMDVLEHIDPDKQIVFEVDHSSGPDAKPWTPVXXXXXXXXXXXXXXXXXXXXXXXXXHGKQREDGLHVSNMNVKYGGKQKVLRDSVM 744          
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 3.640e-68
Identity = 129/275 (46.91%), Postives = 166/275 (60.36%), Query Frame = 1
Query:   19 SLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLK--------ETCDQAV-------YHT-------------------GQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
            +LP+SM T + WM   GCK +R  +S+YTDGHE+ DVV  R  Y+  KRKLALR P W RV+  +L  EE    +G+K        E  D  V       +H                    G +   + AYAREG EWV++GVR LRKKTEGP EMV  FQDER GFGLPL++  L+ VNA RK++G + L   P LRF    KNR+G+ G+ EF+EQ  DV+D + V E   Q V E+DHS+GHT+  ++GLHV NMNVK+GGKQK L D+ +
Sbjct:  290 NLPVSMATTHSWMIVPGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAEEFGAEVYDCVVEGRESIEFHVDLVRDNDSVDRFDALRAELGPEGGHFSAYAREGKEWVVQGVRGLRKKTEGPGEMVPAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTQRPDLRFLQYWKNRDGYRGYDEFKEQIEDVLDVLNVFEPDMQVVVEIDHSSGHTRKREDGLHVGNMNVKYGGKQKVLRDTVI 564          
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 3.930e-62
Identity = 127/268 (47.39%), Postives = 158/268 (58.96%), Query Frame = 1
Query:    1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKL---------------ALRMPCWKRVEWSSLNKEEQAAF------NGLKETCDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
            L  Y ++LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV  R    R  R                 ALR          S+  EE AA          K   ++ V H GQDES+YKAYAREG EWV++GV  L KKTEGP EMVS FQDER GFGLPL++  L+ VNA RK++G + L  SPGL F    KN++G+WG+ EF+EQ         V E   Q V E+DHS+GHT+  ++GLHV NMNVK GGKQ  L D+ M
Sbjct:  392 LLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKGARVHRVPRRSPAGDNGSVDRFDALRAELGPEGGHYSVRFEEAAALPCEHFHTPAKCKGNKEVRHIGQDESVYKAYAREGKEWVVQGVPGLWKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLWFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKNGGKQTVLRDTIM 659          
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.070e-59
Identity = 104/163 (63.80%), Postives = 124/163 (76.07%), Query Frame = 1
Query:  259 CDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGH--KPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
            C + V+H GQDES YKAYAREG EWVIRGVR LRKKTEGP EMVSGFQDER GFGLP+S+A+L  VNA R +EG+  K L  SPGLRF    K ++G+WG+  FEEQ  DV+D +E ++   Q V EVDHS+GH K  ++GLHV+NMNVK+GGKQK L DS M
Sbjct:  108 CGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKTLTRSPGLRFLEYGKGKDGYWGYDLFEEQVEDVVDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVM 270          
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5KP29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP29_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.270e-59
Identity = 98/191 (51.31%), Postives = 130/191 (68.06%), Query Frame = 1
Query:    1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKETCDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQ 573
            L  Y ++LP+SM+T + WM  LGCK ++  +S+YTDGHE   VV  R  Y+  KRKLALR P W RV+  +L  EE    +G+K   +       +DES+YK YAREG EWV++GVR +RK+ EGP EMVS FQDER GFGLPL++  L+ VNA RK++G + L  SP LRF    KN++G+WG+ EF+EQ
Sbjct:  115 LLSYQVNLPVSMSTTHSWMIALGCKYEQATKSFYTDGHEEKVVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAEDFC---AEDESVYKVYAREGKEWVLQGVRGIRKRNEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEDLTRSPDLRFLQHGKNKDGYWGYDEFKEQ 302          
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.310e-50
Identity = 117/328 (35.67%), Postives = 147/328 (44.82%), Query Frame = 1
Query:   19 SLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKET---------------------------------------------------------------------------------------------------------------------CDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAG 651
            +LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV  R  Y+  KRKLALR P W RV+  +L  EE    +G+K                                                                                                                       C++ V H GQDES+YKAYAREG EWV++GVR LRKKTEGP EMVS FQDER GFGLPL++  L+ VNA RK++G + L  SPGLRF    KN++G+WG+ EF+EQ         V E   Q V E+DHS+G
Sbjct:  375 NLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAEEFGAERGASASSSTSISCGTTAPSIDSTISVLNLXXXXXXXXXXXXXXXAEVYDCVVEGRECIEFHVDLLRDIGSVDRFDARRAKLGPEGGHYSVRFEEAAALPCEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSG 702          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JUX8_9PHAE1.950e-8156.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE5.380e-7644.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXL0_9PHAE1.720e-7239.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV8_9PHAE2.600e-7245.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE3.150e-6939.89Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5X3_9PHAE3.640e-6846.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE3.930e-6247.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB9_9PHAE1.070e-5963.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP29_9PHAE1.270e-5951.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4M4_9PHAE1.310e-5035.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119685contigH-elongata_contig119685:37..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score88.6
Seed ortholog evalue4.5e-15
Seed eggNOG ortholog160860.XP_007357160.1
EggNOG OGs22F53@155619,29JY0@1,2RT6R@2759,39VBJ@33154,3H41B@355688,3P12S@4751,3V3WY@5204
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size741
Cds size741
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.9016345-CDS-H-elongata_contig119685:36..5191622929700.9016345-CDS-H-elongata_contig119685:36..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119685 37..519 -
1691679124.2499774-CDS-H-elongata_contig119685:36..5191691679124.2499774-CDS-H-elongata_contig119685:36..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119685 37..519 -
1622929700.9146583-CDS-H-elongata_contig119685:732..9901622929700.9146583-CDS-H-elongata_contig119685:732..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119685 733..990 -
1691679124.2726011-CDS-H-elongata_contig119685:732..9901691679124.2726011-CDS-H-elongata_contig119685:732..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119685 733..990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119685.1517.1prot_H-elongata_contig119685.1517.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119685 37..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119685.1517.1

>prot_H-elongata_contig119685.1517.1 ID=prot_H-elongata_contig119685.1517.1|Name=mRNA_H-elongata_contig119685.1517.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp
LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDY
VRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKETCDQAVYHTGQDESM
YKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELE
RVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVE
VVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM
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mRNA from alignment at H-elongata_contig119685:37..990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119685.1517.1 ID=mRNA_H-elongata_contig119685.1517.1|Name=mRNA_H-elongata_contig119685.1517.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=954bp|location=Sequence derived from alignment at H-elongata_contig119685:37..990- (Himanthalia elongata Himel1 dioecious)
TTAGCACAGTATGGGCTGTCCCTGCCCATCTCCATGACTACTGTAAACGT GTGGATGCGCAAGTTGGGGTGCAAGATTGACCGGGTGAGACAATCGTACT ACACTGACGGCCACGAGAGGGCTGACGTCGTGGCGGACCGCAGCGATTAC GTCCGTAGGAAGCGGAAACTGGCGTTGCGGATGCCATGTTGGAAGCGGGT GGAGTGGTCTTCCCTGAACAAGGAGGAGCAGGCGGCCTTCAACGGTCTGA AGGAAACGGTCGAGGACGCTTTCTCCGCGGAGACGTTCAAATTCGAGCTG GGCGGCACGGAGTATATCGAGGTTCATGTCGATTTCCTGGGCGCCGGCTC GGACGAGAAGTACGATGCCGAGCGCGTGGGAGTGGGTGAAGCGGGGGGGT AGTACAGCATCCGATTCGCGGCAGCGGCGGCTGCCCCGTGCGAGTATTTC CATGCTCCCGAGGTGTGCAAGTGCGATCAAGCGGTGTACCACACCGGGCA AGACGAAAGTATGTACAAAGCGTACGCACGCGAGGGGACCGAGTGGGTAA TCCGAGGAGTGCGCAGCTTGAGGAAGAAAACGGAGGGTCCGGAGGAGATG GTGTCCGGATTTCAGGATGAGAGGCGTGGTTTTGGTCTTCCTCTCTCTGA GGCCGAGCTCGAAAGGGTAAATGCGTTTCGCAAGCAGGAGGGGCACAAGC CTCTGTTGACCTCTCCCGGTTTGCGCTTTTTTCTCCCCAGCAAGAACAGG GAGGGATTTTGGGGGTTCGCAGAGTTTGAGGAGCAGACGATTGATGTGAT GGACACAGTCGAGGTGGTTGAATCCGGCAAGCAGCAGGTGGAAGAGGTGG ATCACTCGGCAGGGCATACAAAGTACCTTGACAACGGGCTACACGTGGCA AACATGAACGTGAAGTGGGGAGGGAAGCAGAAGCCGCTTCATGATAGCAC CATG
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Coding sequence (CDS) from alignment at H-elongata_contig119685:37..990-

>mRNA_H-elongata_contig119685.1517.1 ID=mRNA_H-elongata_contig119685.1517.1|Name=mRNA_H-elongata_contig119685.1517.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at H-elongata_contig119685:37..990- (Himanthalia elongata Himel1 dioecious)
TTAGCACAGTATGGGCTGTCCCTGCCCATCTCCATGACTACTGTAAACGT
GTGGATGCGCAAGTTGGGGTGCAAGATTGACCGGGTGAGACAATCGTACT
ACACTGACGGCCACGAGAGGGCTGACGTCGTGGCGGACCGCAGCGATTAC
GTCCGTAGGAAGCGGAAACTGGCGTTGCGGATGCCATGTTGGAAGCGGGT
GGAGTGGTCTTCCCTGAACAAGGAGGAGCAGGCGGCCTTCAACGGTCTGA
AGGAAACGTTAGCACAGTATGGGCTGTCCCTGCCCATCTCCATGACTACT
GTAAACGTGTGGATGCGCAAGTTGGGGTGCAAGATTGACCGGGTGAGACA
ATCGTACTACACTGACGGCCACGAGAGGGCTGACGTCGTGGCGGACCGCA
GCGATTACGTCCGTAGGAAGCGGAAACTGGCGTTGCGGATGCCATGTTGG
AAGCGGGTGGAGTGGTCTTCCCTGAACAAGGAGGAGCAGGCGGCCTTCAA
CGGTCTGAAGGAAACGTGCGATCAAGCGGTGTACCACACCGGGCAAGACG
AAAGTATGTACAAAGCGTACGCACGCGAGGGGACCGAGTGGGTAATCCGA
GGAGTGCGCAGCTTGAGGAAGAAAACGGAGGGTCCGGAGGAGATGGTGTC
CGGATTTCAGGATGAGAGGCGTGGTTTTGGTCTTCCTCTCTCTGAGGCCG
AGCTCGAAAGGGTAAATGCGTTTCGCAAGCAGGAGGGGCACAAGCCTCTG
TTGACCTCTCCCGGTTTGCGCTTTTTTCTCCCCAGCAAGAACAGGGAGGG
ATTTTGGGGGTTCGCAGAGTTTGAGGAGCAGACGATTGATGTGATGGACA
CAGTCGAGGTGGTTGAATCCGGCAAGCAGCAGGTGGAAGAGGTGGATCAC
TCGGCAGGGCATACAAAGTACCTTGACAACGGGCTACACGTGGCAAACAT
GAACGTGAAGTGGGGAGGGAAGCAGAAGCCGCTTCATGATAGCACCATGT
GCGATCAAGCGGTGTACCACACCGGGCAAGACGAAAGTATGTACAAAGCG
TACGCACGCGAGGGGACCGAGTGGGTAATCCGAGGAGTGCGCAGCTTGAG
GAAGAAAACGGAGGGTCCGGAGGAGATGGTGTCCGGATTTCAGGATGAGA
GGCGTGGTTTTGGTCTTCCTCTCTCTGAGGCCGAGCTCGAAAGGGTAAAT
GCGTTTCGCAAGCAGGAGGGGCACAAGCCTCTGTTGACCTCTCCCGGTTT
GCGCTTTTTTCTCCCCAGCAAGAACAGGGAGGGATTTTGGGGGTTCGCAG
AGTTTGAGGAGCAGACGATTGATGTGATGGACACAGTCGAGGTGGTTGAA
TCCGGCAAGCAGCAGGTGGAAGAGGTGGATCACTCGGCAGGGCATACAAA
GTACCTTGACAACGGGCTACACGTGGCAAACATGAACGTGAAGTGGGGAG
GGAAGCAGAAGCCGCTTCATGATAGCACCATG
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