mRNA_H-elongata_contig119685.1517.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE) HSP 1 Score: 268 bits (684), Expect = 1.950e-81 Identity = 135/241 (56.02%), Postives = 168/241 (69.71%), Query Frame = 1
Query: 19 SLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKETCDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
+LP+SM T + WM LGCK +R +S+YTDGHE+ DVV R Y+ KRKLALR P W RV+ +L EE +G+K V H GQDES+YKAYAREG EWV++GVR LRKKTEGP EMVS FQDER GFGLPL++ L+ VNA RK++G + L SPGLRF KN++G+WG+ EF+EQ V E Q V E+DHS+GHT+ ++GLHV NMNVK+GGKQK L D+ M
Sbjct: 378 NLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLLPEELQRLDGIKGK----VRHIGQDESLYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVM 614
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE) HSP 1 Score: 254 bits (650), Expect = 5.380e-76 Identity = 138/312 (44.23%), Postives = 176/312 (56.41%), Query Frame = 1
Query: 19 SLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKET-----------------------------------------------------------------------CDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
+LP+SM T + WM LGCK +R +S+YTDGHE+ DVV R Y+ KRKLALR P W RV+ +L EE +G+K C++ V H GQDES+YKAYAREG EWV++GVR LRKKTEGP EMVS FQDER GFGLPL++ L+ VNA RK++G + L SPGLRF KN++G+WG+ EF+EQ D +D ++V E Q V E+DHS+GHT+ ++GLHV NMNVK+GGKQK L D+ M
Sbjct: 454 NLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAKDFCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQMEDALDVLDVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVM 765
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE) HSP 1 Score: 242 bits (617), Expect = 1.720e-72 Identity = 148/372 (39.78%), Postives = 188/372 (50.54%), Query Frame = 1
Query: 1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKE-------------------------------------------------TC-------------------------------------------------------DQA-------------------VYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGH--KPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
L Y ++LP+SM+T + WM +LGCK +R +S+YTD HE+ +VV R +Y+ ++RK+ALR P W RV+ ++L +EE + LK TC DQA V+H GQDES YKAYAREG EWVIRGVR LRKKTEGP EMVSGFQDER GFGLP+S+A+L VNA R +EG+ KPL SPGLRF K ++G+WG+ +FEEQ DVMD +E ++ Q V EVDHS+GH K ++GLHV+NMNVK+GGKQK L DS M
Sbjct: 54 LHAYQVNLPVSMSTTHSWMIRLGCKYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLLRDDGSVDNFDKLRAALDAARTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPEGGDYSVRFDQAAAAQCEHFHPPNKCRCGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKPLTRSPGLRFLEYGKGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVM 425
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE) HSP 1 Score: 242 bits (617), Expect = 2.600e-72 Identity = 132/290 (45.52%), Postives = 169/290 (58.28%), Query Frame = 1
Query: 1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKETCDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQV-------------------------------------------EEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
L Y ++LP+SM T + WM LGCK +R +S+YTDGHE+ DVV R Y+ KRKLALR P W RV+ +L EE +G+K A +DES+YKAYA EG +WV++GVR +RKKTEGP EMVSGFQDER GFGLPL++ L+ VNA RK++G + L SPGLRF KN++G+WG+ EF+EQ V E Q V E+DHS+GHT+ ++GLHV NMNVK+GGKQK L D+ M
Sbjct: 203 LLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIK---GPAKDFCAEDESVYKAYAHEGKKWVVQGVRGIRKKTEGPGEMVSGFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIDHSSGHTRQREDGLHVGNMNVKYGGKQKVLRDTVM 489
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE) HSP 1 Score: 239 bits (609), Expect = 3.150e-69 Identity = 142/356 (39.89%), Postives = 184/356 (51.69%), Query Frame = 1
Query: 1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKET-------------------------------------------------------------------------CDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGH--KPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAG----------------------------------HTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
L Y ++LP+SM+T + WM +LGC+ +R +S+YTD HE+ +VV R +Y+ ++RK+ALR P W RV+ ++L +EE + LK C + V+H GQDES YKAYAREG EWVIRGVR LRK+TEGP EMVSGFQDER GFGLP+S+A+L VNA R +EG+ K L SPGLRF K ++G WG+ +FEEQ DVMD +E ++ KQ V EVDHS+G H K ++GLHV+NMNVK+GGKQK L DS M
Sbjct: 389 LHAYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLLRDDGSVDNFDKLRAALGPEGGDYSVRFDQAAAAQCEYFHPTNKCRCGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKRTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKTLTRSPGLRFLEYGKGKDGCWGYDQFEEQVEDVMDVLEHIDPDKQIVFEVDHSSGPDAKPWTPVXXXXXXXXXXXXXXXXXXXXXXXXXHGKQREDGLHVSNMNVKYGGKQKVLRDSVM 744
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE) HSP 1 Score: 233 bits (595), Expect = 3.640e-68 Identity = 129/275 (46.91%), Postives = 166/275 (60.36%), Query Frame = 1
Query: 19 SLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLK--------ETCDQAV-------YHT-------------------GQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
+LP+SM T + WM GCK +R +S+YTDGHE+ DVV R Y+ KRKLALR P W RV+ +L EE +G+K E D V +H G + + AYAREG EWV++GVR LRKKTEGP EMV FQDER GFGLPL++ L+ VNA RK++G + L P LRF KNR+G+ G+ EF+EQ DV+D + V E Q V E+DHS+GHT+ ++GLHV NMNVK+GGKQK L D+ +
Sbjct: 290 NLPVSMATTHSWMIVPGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAEEFGAEVYDCVVEGRESIEFHVDLVRDNDSVDRFDALRAELGPEGGHFSAYAREGKEWVVQGVRGLRKKTEGPGEMVPAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTQRPDLRFLQYWKNRDGYRGYDEFKEQIEDVLDVLNVFEPDMQVVVEIDHSSGHTRKREDGLHVGNMNVKYGGKQKVLRDTVI 564
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE) HSP 1 Score: 219 bits (558), Expect = 3.930e-62 Identity = 127/268 (47.39%), Postives = 158/268 (58.96%), Query Frame = 1
Query: 1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKL---------------ALRMPCWKRVEWSSLNKEEQAAF------NGLKETCDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
L Y ++LP+SM T + WM LGCK +R +S+YTDGHE+ DVV R R R ALR S+ EE AA K ++ V H GQDES+YKAYAREG EWV++GV L KKTEGP EMVS FQDER GFGLPL++ L+ VNA RK++G + L SPGL F KN++G+WG+ EF+EQ V E Q V E+DHS+GHT+ ++GLHV NMNVK GGKQ L D+ M
Sbjct: 392 LLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKGARVHRVPRRSPAGDNGSVDRFDALRAELGPEGGHYSVRFEEAAALPCEHFHTPAKCKGNKEVRHIGQDESVYKAYAREGKEWVVQGVPGLWKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLWFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQREDGLHVGNMNVKNGGKQTVLRDTIM 659
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE) HSP 1 Score: 207 bits (526), Expect = 1.070e-59 Identity = 104/163 (63.80%), Postives = 124/163 (76.07%), Query Frame = 1
Query: 259 CDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGH--KPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAGHTKYLDNGLHVANMNVKWGGKQKPLHDSTM 741
C + V+H GQDES YKAYAREG EWVIRGVR LRKKTEGP EMVSGFQDER GFGLP+S+A+L VNA R +EG+ K L SPGLRF K ++G+WG+ FEEQ DV+D +E ++ Q V EVDHS+GH K ++GLHV+NMNVK+GGKQK L DS M
Sbjct: 108 CGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKTLTRSPGLRFLEYGKGKDGYWGYDLFEEQVEDVVDVLEHIDPDMQIVFEVDHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVM 270
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5KP29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP29_9PHAE) HSP 1 Score: 200 bits (508), Expect = 1.270e-59 Identity = 98/191 (51.31%), Postives = 130/191 (68.06%), Query Frame = 1
Query: 1 LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKETCDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQ 573
L Y ++LP+SM+T + WM LGCK ++ +S+YTDGHE VV R Y+ KRKLALR P W RV+ +L EE +G+K + +DES+YK YAREG EWV++GVR +RK+ EGP EMVS FQDER GFGLPL++ L+ VNA RK++G + L SP LRF KN++G+WG+ EF+EQ
Sbjct: 115 LLSYQVNLPVSMSTTHSWMIALGCKYEQATKSFYTDGHEEKVVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAEDFC---AEDESVYKVYAREGKEWVLQGVRGIRKRNEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEDLTRSPDLRFLQHGKNKDGYWGYDEFKEQ 302
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE) HSP 1 Score: 187 bits (475), Expect = 1.310e-50 Identity = 117/328 (35.67%), Postives = 147/328 (44.82%), Query Frame = 1
Query: 19 SLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYVRRKRKLALRMPCWKRVEWSSLNKEEQAAFNGLKET---------------------------------------------------------------------------------------------------------------------CDQAVYHTGQDESMYKAYAREGTEWVIRGVRSLRKKTEGPEEMVSGFQDERRGFGLPLSEAELERVNAFRKQEGHKPLLTSPGLRFFLPSKNREGFWGFAEFEEQTIDVMDTVEVVESGKQQVEEVDHSAG 651
+LP+SM T + WM LGCK +R +S+YTDGHE+ DVV R Y+ KRKLALR P W RV+ +L EE +G+K C++ V H GQDES+YKAYAREG EWV++GVR LRKKTEGP EMVS FQDER GFGLPL++ L+ VNA RK++G + L SPGLRF KN++G+WG+ EF+EQ V E Q V E+DHS+G
Sbjct: 375 NLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAEEFGAERGASASSSTSISCGTTAPSIDSTISVLNLXXXXXXXXXXXXXXXAEVYDCVVEGRECIEFHVDLLRDIGSVDRFDARRAKLGPEGGHYSVRFEEAAALPCEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSG 702 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119685.1517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119685.1517.1 >prot_H-elongata_contig119685.1517.1 ID=prot_H-elongata_contig119685.1517.1|Name=mRNA_H-elongata_contig119685.1517.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp LAQYGLSLPISMTTVNVWMRKLGCKIDRVRQSYYTDGHERADVVADRSDYback to top mRNA from alignment at H-elongata_contig119685:37..990- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119685.1517.1 ID=mRNA_H-elongata_contig119685.1517.1|Name=mRNA_H-elongata_contig119685.1517.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=954bp|location=Sequence derived from alignment at H-elongata_contig119685:37..990- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119685:37..990- >mRNA_H-elongata_contig119685.1517.1 ID=mRNA_H-elongata_contig119685.1517.1|Name=mRNA_H-elongata_contig119685.1517.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at H-elongata_contig119685:37..990- (Himanthalia elongata Himel1 dioecious)back to top |