mRNA_H-elongata_contig11967.1516.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11967.1516.1
Unique NamemRNA_H-elongata_contig11967.1516.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: D8LNZ1_ECTSI (PDCD2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ1_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 3.890e-114
Identity = 249/531 (46.89%), Postives = 302/531 (56.87%), Query Frame = 1
Query:    1 PPRSLCKTFQAWFGEAPVCVDDLVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVRTQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGADTGTWDDVVG-GDXXXXXXXXXECEALLESCGGSKGEATAATIEALLKERDNRFAEMHSKRAGRLTTLACRKPAAT---------------AARGDRNVEIIARHVVDADNRRSM------RHCFPAKFMSFFPEPWDPKGSGIDN-DMEERIRRYREQEEDRGLVVELDKALRW-GASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTCAGTGDTSVCGVIGDSTAAEAGGREEDING-----SSLVTVKDKGLSHAPIKGEDPNDFGQDQDDYIT-------RKDYNGSPAIMPTPSAEDRERLKTWGMDWGVVAVWSCPKSCKGSCEEFVVVQLPV 1485
            P +S    + AWFGEAPV V DLVC LC R L+LV Q +YAPTH ERSLC+FGCNRAACS+   GWRVVRTQ  P+  VEPA +         DS  +P   S P      ATD WGA   +WD     G+   XXXXXX      E  GG       A I+ALL +++ +  +  + +  R +  A     +T               ++ G  + +  A     +D   +       R CFPAK +SF PEPW  + S  D+ DME R+RRYREQEEDRGLV  LD AL    A  + + H       VA+VGEKYERTPARAKAVMRFA+RVARSPQQVVRYAYGGEPLWSASDPP E IPPC  CG  RVFEMQLMPALLLQL+V++ AERET  +        S       ST ++     ++ N       S V V+ KG   A  +  D +   Q     +         +D      +MPTPS E+RERL+T GMDWGVVA+WSCP+SC  SCEE VVVQLPV
Sbjct:   28 PDKSKAGGWPAWFGEAPVKVGDLVCGLCGRWLYLVTQ-IYAPTHVERSLCLFGCNRAACSLRPEGWRVVRTQ-APQP-VEPAQD---------DS--DPTAASAPAAH---ATDPWGASDVSWDAPASDGEGWGXXXXXXXXGVDTEGVGG----IATADIDALLDKQEKK--QSSTCQGDRASAAAXXXXXSTGGDTCSSLAELGPNHSSSGSGSQKKSAAESSKSDTVAAEGGDWGGRPCFPAKTVSFVPEPWGAESSRTDDKDMENRLRRYREQEEDRGLVAALDHALGLKDAGGLSSEHGGKEGKAVASVGEKYERTPARAKAVMRFADRVARSPQQVVRYAYGGEPLWSASDPPREEIPPC-ACGATRVFEMQLMPALLLQLQVNDLAERETGSLEGGSPATFSGLESKKISTLSQVADGHDNNNTLKSITPSAVAVQPKGA--ASTRSTDEHGVAQGDGSGVLAGIGVSGEEDEGNETTMMPTPSVEERERLRTLGMDWGVVAIWSCPRSCSISCEECVVVQLPV 532          
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A6G0XPA3_9STRA (PDCD2_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPA3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.750e-23
Identity = 118/379 (31.13%), Postives = 161/379 (42.48%), Query Frame = 1
Query:   31 AWF-GEAPVCVDDLVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVRTQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGADTGT------WDDVVGGDXXXXXXXXXECEALLESCGGSKGEATAATI--EALLKERDNRFAEMHSKRAGRLTTLACRKPAATAARGDRNVEIIARHVVDADNRRSMRHCFPAKFMSFFPEPWDPKGSGIDNDMEER--IRRYREQEEDRGL--VVELDKALRW-----GASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAER 1113
            AW+  +  +  + LVC  C + L+LVAQ VYAP    R+L  FGCN + C      WRV R Q   EN  E  A+ VE           PP P      +  +T  WG D+G       W DV G                  S  GS+  + +  +  E LL  RD      H+ ++ R+       PA    +  + V I   H             F + ++S   EP     SG++    E   +  Y E+EE         L + L+      G+S+    H  S           YERTP R K  +RF +R+ RSP Q +RY YGGEPLW  S PP   IP C  CG  R+FEMQL+P     L+V+ + E+
Sbjct:   33 AWYDNKKAIAQEQLVCPKCQKSLYLVAQ-VYAPVTTHRTLYAFGCNSSKCGDTPKSWRVFRFQ-AEEN--ESKASDVET----------PPAP------VTISTGGWGNDSGDEDDADDWGDVPG------------------STWGSQATSASTNVDLEELLSARD------HALQSTRVQQQPTSTPAKPEEQPPQPVHIDGPH-------------FQSIYLSVEDEP---VVSGVEKYHHETQLLNAYLEEEEKENASEATRLRQILKSKGESSGSSDSQGEHAES-----------YERTPLREKLFLRFQKRIKRSPNQCLRYNYGGEPLWP-SPPPQLEIPKCP-CGEPRMFEMQLIPTTNYFLKVENYIEK 338          
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A8K1CFZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFZ9_PYTOL)

HSP 1 Score: 110 bits (276), Expect = 1.560e-22
Identity = 136/508 (26.77%), Postives = 175/508 (34.45%), Query Frame = 1
Query:   31 AWFG-EAPVCVDDLVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVR----TQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGADTGTWDDVVGGDXXXXXXXXXECEALLESCGGSKGEATAATIEALLKERDNRFAEMHSKRAGRLT-------------------TLACRKPAATAARGD-RNVEIIARHVVDADNRRSMRHCFPAKFMSFFPEPWDPKGSGIDNDME-ERIRRYREQEEDRGLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTCAGTGDTSVCGVIGDSTAAEAGGREEDINGSSLVTVKDKGLSHAPIKGEDPNDFGQDQDDYITRKDYNGSPAIMPTPSAEDRERLKTWGMDWGVVAVWSCPKSCKGSCEEFVVVQ 1476
            AW+G + P     L C+ C + LF VAQ VYAP   +R+L VFGCN   C+     WRV R    TQ LP    EPAA    A                           W       DD              + E LL+    +   ++A                                                   PAA  A     NV     H V           FP+ ++    EP+       D   E E ++ Y  QEE+     +++   R  AS               + GE YERTPA+ K  MRF +R++R P QV+RY YGGEPLW A    +  +P C  CG  R FE QL P +   L+VDEFA ++                                              +HA  K                + D +  PA  PT S          GMDW  V V+SCPKSC+ S EEF  VQ
Sbjct:   33 AWYGADGPSDAKTLTCQKCKQSLFHVAQ-VYAPVESDRTLYVFGCNSPECTDAPGSWRVFRDQVDTQPLPAAVSEPAAVTSTAXXX---------------XXXXXXXSDWS------DDEEDKAVSSVTEGLNDLELLLQQRDDAMKTSSAPVTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPIAAPAAPVANAKPTNVSKAPAHKVSPAG-----DVFPSLYIDVIDEPFVDYAKENDFSHENELLQEYMRQEEEEK-SNDVNDLRRIIASXXXXXXXXXXXXXXXSSGESYERTPAQQKHFMRFQKRISRCPLQVLRYDYGGEPLWPAPPARNLKVPRCP-CGEERAFEFQLTPTINYFLKVDEFAAKKLE--------------------------------------------AHAVPK----------------KSDSDAPPASAPTQSGG--------GMDWASVVVYSCPKSCQQSREEFAYVQ 443          
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A485L176_9STRA (Aste57867_13990 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L176_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.730e-18
Identity = 114/371 (30.73%), Postives = 151/371 (40.70%), Query Frame = 1
Query:   31 AWFGEAPVCVDD-LVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVRTQ--KLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSI--NPATDAWGADTGTW--DDVVGGDXXXXXXXXXECEALLESCGGSKGEATAATIEALLKERDNRFAEMHSKRAGRLTTLACRKPAATAARGDRNVEIIARHVVDADNRRSMRHCFPAKFMSFFPEPWDPKGSGID--NDMEERIRRY--REQEEDRGLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAE 1110
            AWF EA    +  LVC  C   LFLVAQ VYAP    R+L +FGCN + C    + WRV R Q  +     VEP A                            + +T AWGA   T   DDV                                 +E LLK RD             +TT+   K +A++ R    VE  A       +  S    FP+ +++   EP     SG+   N   + +  Y   E++E+   V  L   L+     V       G        E YERTP R K  ++F +R+ RSP Q +RY YGG+PLW  S PP  V+P C  CG  R FEMQLMP     L+V+ + +
Sbjct:   31 AWFSEATSFPESQLVCPKCQSQLFLVAQ-VYAPVTSPRTLYIFGCNSSKCGDSPNSWRVFRFQIDEAEVESVEPVAVAAXXXXXXXXXXXXXXXXXXXXXXGWGDASTSAWGAAVPTTSNDDV--------------------------------DLEELLKVRDTAM----------VTTV---KASASSTR----VETKAATPTPTYHGPS----FPSIYLNVDDEP---AASGVQKYNHETQLLNAYLAEEEKENASEVARLRTMLKSKTDVVAPSEGQGGEY-----AESYERTPLREKLFLKFQKRIKRSPNQCLRYNYGGQPLWP-SPPPKLVVPNCT-CGEPRTFEMQLMPMTNYFLKVENYVQ 337          
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A7S4IB63_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IB63_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.850e-17
Identity = 75/220 (34.09%), Postives = 92/220 (41.82%), Query Frame = 1
Query:  874 EKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSAS--DPPHEV-----------------IPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTCAGTGDTSVCGVIGDSTAAEAGGREEDINGSSLVTVKDKGLSHAPIKGEDPNDFGQDQDDYITRKDYNGSPAIMPTPSAEDRERLKTWGMDWGVVAVWSCPKSCKGSCEEFVVVQ 1476
            EKYER P   +A + F ER+ R+P+QVVRYAYGG PLWS     PP +                  +PPC GCG+ R FEMQL PALLL L VD  A   T               +    +A E  GREE+  G S              +G D    G                                 GM+WG +AV+ CP SC GS  E +V+Q
Sbjct:  160 EKYERLPPDQRAFLTFTERMRRAPRQVVRYAYGGVPLWSVPTPSPPSKKEKRNRGRKSARRTQFPSVPPCTGCGSERTFEMQLAPALLLALDVDGHALLPT---------------LASSVSAGEGEGREEE--GGS--------------RGVDGGGEG---------------------------------GMNWGSIAVYCCPLSCDGSRGEALVMQ 315          
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A2D4BDN7_PYTIN (PDCD2_C domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDN7_PYTIN)

HSP 1 Score: 92.4 bits (228), Expect = 4.390e-17
Identity = 63/154 (40.91%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  661 FPAKFMSFFPEPWDPKGSGIDNDME-ERIRRY-REQEEDRGLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERE 1116
            FPA F+    EP++   +  D   E E +++Y R++EED+   V     LR   +N      +      A+ GE YERTPA+ K  MRF +R+ R P QV+RY YGGEPLW    P    IP C  CG  R FE+QL P +   L+VDEFA ++
Sbjct:   98 FPALFIDVIDEPYEDFKTESDYSHENELLQQYMRQEEEDKSTDV---NDLRRIIANAKKSDGSVSGSAAASSGESYERTPAQQKHFMRFQKRINRCPLQVLRYDYGGEPLWPTPMPRGLKIPRC-ACGEERAFELQLTPTINYFLKVDEFAAKQ 247          
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: L1J492_GUITC (PDCD2_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J492_GUITC)

HSP 1 Score: 84.3 bits (207), Expect = 1.480e-14
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  871 GEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTCAGTGDTSVCGVIGDSTAAEAGGREED 1212
            GE++E T    K   +F +RVAR+P+QV+RY + GEPLW +S+     +PPC  CG++RV+EMQ MP L  +L V+ FA +    M C      S     G S  A+  G  ED
Sbjct:  142 GEEHESTKGD-KQFRKFRKRVARAPEQVLRYCWNGEPLWQSSEAQCTEVPPCPRCGSSRVYEMQAMPGLFYELGVEAFAPKGDEGMDCGVAIIYSCSSSCGSSGQADGDGSGED 254          
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A7S4PEL0_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PEL0_GUITH)

HSP 1 Score: 86.3 bits (212), Expect = 1.600e-14
Identity = 92/388 (23.71%), Postives = 165/388 (42.53%), Query Frame = 1
Query:   67 LVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVRTQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGA-DTGTWDD-------------VVGGDXXXXXXXXXECEALLESCGGSKGEATAATIEALL--------KERDNRFAEMHSKRAGRLTTLACRKPAATAARGDRN----VEIIARHV-VDADNRRS-----MRHCFPAKFMSFFPEPWDPKGSGIDNDMEERIRRYREQEEDRGLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTC 1134
            + C  C+ +L+L+ Q         R+L +F C R+ C      W+ +R QK      +  ++  +      +S  +P     P  + + A  AWG  D   W++               GG          E    +E  G         +++  +        ++ + + A+  S +AGR      +  +   A  D      V ++A     +AD+  S     ++  FP  ++ +  EP        + + ++ + +Y+E  E   +V EL++    G++ + +             GE++E T    K   +F +RVAR+P+QV+RY + GEPLW +S+     +PPC  CG++RV+EMQ MP L  +L V+ FA +    M C
Sbjct:   34 ITCDACNNNLYLLLQLNTDTNVLRRNLYLFACVRSKCQSQPGSWKALRVQKRWNKLDDDISSEHQQVKVQPNSKPQP----RPLFTKDDA--AWGCEDASDWNEGGAVALPQPAAACSDGGKSSAPEGDAGEDNWGMEEAGDRSIPQDLLSLQQKVQDMKMNAGRDAEGQHADAESDKAGRRRKKKGKNQSGAKAGLDVGAAEFVPVMAGGFNAEADSHSSNQGEQVKAFFPCYYIEYDAEP--------EPEEDKDLAKYKELAEQ--VVAELNETSGGGSAALWS-------------GEEHESTKGD-KQFRKFRKRVARAPEQVLRYCWNGEPLWQSSEAQCTEVPPCPRCGSSRVYEMQAMPGLFYELGVEAFAPKGDEAMDC 391          
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A7S4PFU5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PFU5_GUITH)

HSP 1 Score: 81.3 bits (199), Expect = 1.890e-14
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  871 GEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTC 1134
            GE++E T    K   +F +RVAR+P+QV+RY + GEPLW +S+     +PPC  CG++RV+EMQ MP L  +L V+ FA +    M C
Sbjct:   69 GEEHESTKGD-KQFRKFRKRVARAPEQVLRYCWNGEPLWQSSEAQCTEVPPCPRCGSSRVYEMQAMPGLFYELGVEAFAPKGDEAMDC 155          
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: UPI00140218EA (programmed cell death protein 2-like isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140218EA)

HSP 1 Score: 83.2 bits (204), Expect = 1.820e-13
Identity = 110/390 (28.21%), Postives = 154/390 (39.49%), Query Frame = 1
Query:    1 PPRSLCKTFQAWFGEAPVCVDDL------VCRLCDRDLFLVAQQVYAPTH---FERSLCVFGCNRAACSVHSHGWRVVRTQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGADTGTWDDVVGGDXXXXXXXXXECEALLESCGGSKGEATAATIEALLKERDNRFAEM--HSKRAGRLTTLACRKPAATAARGDRNVEIIARHVVDADNRRSMRHCFPA-KFMSFFPEPWDPKGSGIDNDMEER---------IRRYREQEEDR-GLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARA--KAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPP--CEGCGTARVFEMQLMPALLLQLR 1092
            PPRS         G  P CV  +       C  C     LVAQ +Y P     + R+L +  C RA CS  + GWR +R+Q     Y+EPA   V A           P P+ P +    +T  W      W D V GD                      G+A A  +   L +   R  ++  H   +       C      +  G R   I A         R      PA + +++F      +    +  +EE          +  Y+ +E    GLV    +   W  S+        G   V    E+YE   AR   +  ++F +R AR P+QV+RY++GGEPL+ ++  PH   PP  C  CG  RVFEMQLMPAL+ QLR
Sbjct:   20 PPRSATSWSCNKIGGEPDCVPGVPLVGRTACGACGSAQTLVAQ-LYCPLEGSPYHRALHLLACPRATCSTSARGWRALRSQ-----YLEPA-RAVPA-----------PAPTPPQVEPLMSTKDWCDGADDWGDDVDGDA---------------------GDAPAQAVP--LPDSTARVPQLPPHPSPSPNPAMELCPGMDGLSLGGGR--AIAAXXXXXXAMPRPQESGEPAPRLLAYFLNAVSEEDCAEEEGVEEAELTQHARALLSEYQRREGGADGLVAAQQQP--WQGSDS-----GGGSGGVGGAREEYEPACARHGDRLFLKFMKRTARCPRQVLRYSWGGEPLYVSAPDPHLTAPPTPCPLCGAPRVFEMQLMPALVWQLR 359          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNZ1_ECTSI3.890e-11446.89PDCD2_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6G0XPA3_9STRA1.750e-2331.13PDCD2_C domain-containing protein n=1 Tax=Aphanomy... [more]
A0A8K1CFZ9_PYTOL1.560e-2226.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485L176_9STRA1.730e-1830.73Aste57867_13990 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S4IB63_9STRA3.850e-1734.09Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2D4BDN7_PYTIN4.390e-1740.91PDCD2_C domain-containing protein n=1 Tax=Pythium ... [more]
L1J492_GUITC1.480e-1441.23PDCD2_C domain-containing protein n=1 Tax=Guillard... [more]
A0A7S4PEL0_GUITH1.600e-1423.71Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S4PFU5_GUITH1.890e-1445.45Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
UPI00140218EA1.820e-1328.21programmed cell death protein 2-like isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11967contigH-elongata_contig11967:4496..7901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.9
Seed ortholog evalue3.8e-72
Seed eggNOG ortholog2880.D8LNZ1
KEGG koko:K14801
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.positive regulation of hematopoietic stem cell proliferation
EggNOG OGsKOG2061@1,KOG2061@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProgrammed cell death protein 2, C-terminal
Ec32 orthologEc-01_000490.1
Exons4
Model size1576
Cds size1203
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11967.1516.1prot_H-elongata_contig11967.1516.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11967 6043..7813 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.766555-UTR-H-elongata_contig11967:4495..46061622929700.766555-UTR-H-elongata_contig11967:4495..4606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11967 4496..4606 +
1691679124.1932704-UTR-H-elongata_contig11967:4495..46061691679124.1932704-UTR-H-elongata_contig11967:4495..4606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11967 4496..4606 +
1622929700.7818048-UTR-H-elongata_contig11967:5868..60421622929700.7818048-UTR-H-elongata_contig11967:5868..6042Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11967 5869..6042 +
1691679124.20584-UTR-H-elongata_contig11967:5868..60421691679124.20584-UTR-H-elongata_contig11967:5868..6042Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11967 5869..6042 +
1622929700.8533502-UTR-H-elongata_contig11967:7813..79011622929700.8533502-UTR-H-elongata_contig11967:7813..7901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11967 7814..7901 +
1691679124.2413738-UTR-H-elongata_contig11967:7813..79011691679124.2413738-UTR-H-elongata_contig11967:7813..7901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11967 7814..7901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.7962296-CDS-H-elongata_contig11967:6042..66561622929700.7962296-CDS-H-elongata_contig11967:6042..6656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11967 6043..6656 +
1691679124.2178898-CDS-H-elongata_contig11967:6042..66561691679124.2178898-CDS-H-elongata_contig11967:6042..6656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11967 6043..6656 +
1622929700.8163476-CDS-H-elongata_contig11967:6946..70831622929700.8163476-CDS-H-elongata_contig11967:6946..7083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11967 6947..7083 +
1691679124.2258508-CDS-H-elongata_contig11967:6946..70831691679124.2258508-CDS-H-elongata_contig11967:6946..7083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11967 6947..7083 +
1622929700.834049-CDS-H-elongata_contig11967:7361..78131622929700.834049-CDS-H-elongata_contig11967:7361..7813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11967 7362..7813 +
1691679124.2337492-CDS-H-elongata_contig11967:7361..78131691679124.2337492-CDS-H-elongata_contig11967:7361..7813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11967 7362..7813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11967.1516.1

>prot_H-elongata_contig11967.1516.1 ID=prot_H-elongata_contig11967.1516.1|Name=mRNA_H-elongata_contig11967.1516.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=401bp
MAEPPVPSTPTMSINPATDAWGADTGTWDDVVGGDEWGAGAGGWECEALL
ESCGGSKGEATAATIEALLKERDNRFAEMHSKRAGRLTTLACRKPAATAA
RGDRNVEIIARHVVDADNRRSMRHCFPAKFMSFFPEPWDPKGSGIDNDME
ERIRRYREQEEDRGLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYE
RTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGC
GTARVFEMQLMPALLLQLRVDEFAERETPKMTCAGTGDTSVCGVIGDSTA
AEAGGREEDINGSSLVTVKDKGLSHAPIKGEDPNDFGQDQDDYITRKDYN
GSPAIMPTPSAEDRERLKTWGMDWGVVAVWSCPKSCKGSCEEFVVVQLPV
*
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mRNA from alignment at H-elongata_contig11967:4496..7901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11967.1516.1 ID=mRNA_H-elongata_contig11967.1516.1|Name=mRNA_H-elongata_contig11967.1516.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3406bp|location=Sequence derived from alignment at H-elongata_contig11967:4496..7901+ (Himanthalia elongata Himel1 dioecious)
CCTCCCCGATCGCTTTGTAAAACATTTCAGGCGTGGTTCGGGGAGGCTCC CGTGTGTGTCGACGATCTGGTATGTCGTCTCTGCGATAGAGATTTGTTTC TCGTCGCTCAGGTGAGGGTACTTCCCCATCATGATACTGCTGTAGCCCAG AGGTTGAACAGCGTTTTCACGCTTCTAAGTGCAGGGAGATGCTGGACAAG CCTCCTGAGCTAGTGTCCTCGGCGGTATACAGGCGTATTGGTCATGCGGG TATAATGCAAGACTGGTAGGCAGCAGTGCTGAAGACTCTATCCTCCTTCG ACAAACAGCAGCGTAGCATATGACAATGCTCTTTTTGGCAGCCGAAATTA GTCGTTTCAATATTCCCAACGTGTGGGAAATAATGTATATTCTGTATTGA GGTCGGCAAAGCTGTGAACCAATCAAATACCTACCCCAACTAAAGGTTAA AGGTCAAATCAGGACTGTTCATGGAAACATTGACCACCGGGAACGTAGAT GAAGGTTTAGGACAAATAGATAAAGAAAACGAGGACAAATACGAATGTGA CTGTGGCTTGGATGAGTAGTGTAGCAGAATGGCCGTTGTATGAACAGGAG AATGGCCGTTTTATGTACGGTATAACCGAAGGAAACATTAAAATAGAGAT ACTTTTGAAGCATGGGACAGCCAGACGAAAGTTTTGGCTATATACTGGGG GATACAAAGTGGCCCGAGAAGGCAAAACCTAATGTAGACAGGATGATAAT AGGAAAATCATTTTTGCGCCACCTTTGACAAATTAGAAAGGAACGATTGG TCATTGGTGATCGATCATGTAGGAACAATGATCTTCTCCCGGGGACGTGT AGTCAAAAGTCCAAGGGCTAATGCGTGCAATTTTTTACTACGCCCTTTTC CGCTATACATGCTAAGTTAGAAGATCGTCGTGCGTAACGCGGGCAGGAGT TTGGCTGTTACTGGTTGGCCGTTAGACTTGACGATTTTTTTGTCGCGATT TCGGATCTCTAATTTTCGTGTAGCAGTGTTTCACGATTATTTAACCCATG GACCTTCGTACCTCTTTTGAGGCCACCAGCGGATTAGGCATGAATATATG GCTAACCAACTTGTGTCACCGTTGTTATTCAGCTCCAAAGACAATACTCT GAATTGGTAAACAAACGAGAAGACATCGGGACTTTTTTACTTTAATTAAT TTCGCACATTTTGCCTCATTTCACGTGTGGTCCTGATTAAGTCCCAGCGA TAGCTGCACGTATTAGACGCTGTGATGGATTATGTTTCTACAAGACGTGG TAGATATTCTACAAGACGTGCGCAATCAATCTTCGGCCACTTGAAATGCC GACAACTTGTCCGAAACCGCCAGCAGGTCTACGCCCCGACGCACTTCGAA CGATCTCTATGCGTATTCGGTTGCAATCGTGCGGCCTGCTCTGTGCACTC CCATGGCTGGCGAGTTGTCCGCACGCAAAAGCTTCCAGAAAACTACGTTG AACCGGCGGCTAACTGCGTTGAGGCTCAGAATGCAACCACGGACAGCATG GCCGAACCACCCGTGCCGTCTACTCCTACAATGAGCATCAACCCAGCGAC TGATGCATGGGGAGCAGACACAGGAACATGGGATGATGTAGTGGGAGGAG ACGAATGGGGTGCCGGAGCTGGCGGCTGGGAATGCGAAGCGTTGCTGGAA AGCTGCGGCGGGTCAAAAGGCGAAGCAACTGCAGCAACAATCGAAGCCCT GCTAAAGGAGAGAGATAATAGGTTTGCAGAAATGCATAGCAAACGGGCAG GACGTCTGACCACCCTTGCGTGCCGTAAACCCGCGGCAACAGCTGCAAGA GGTGATCGCAACGTCGAAATAATTGCGCGACACGTTGTTGACGCGGATAA CAGGCGGTCGATGCGCCATTGCTTTCCGGCCAAGTTTATGAGCTTCTTTC CCGAACCGTGGGATCCAAAAGGCAGCGGTATCGACAACGACATGGAGGAA CGTATCCGACGGTATCGAGAGCAAGAGGAAGATCGGGGGCTTGTGGTCGA GCTTGATAAGGCGCTACGTTGGGGGGCAAGTAACGTGCTCAATAGACATG TCAACTCTGGGAGGGTACGAGTAGCCGCCGTGGGGGAAAAATACGAGCGC ACGCCGGCAAGGTGAGGTCATGCTGCCCATAACATTTTCCCTTATCGTTG TTGCACGAAATTTCTCAATACTTTGGGGAGTCTCCAGATACGAGTGTACC TTCTTCGGAGACGCTCTGTATTTCTTTGATAGCGATACGCCTCGGGCACC GGCGTGATACTACACTGATTTTTTTCGTATGAAATACATCGAAATATATC CACAGTCAGCCTGCTTGACCAAGGTCTTTGTTGCTGTCCCGTAATAGTGG TGTTTGCCATGTGCTTATAGTATCGGAAACGCGCCGTTTTTCGCTTTTTA GGGCGAAGGCCGTCATGCGCTTCGCGGAAAGGGTCGCTCGATCGCCCCAG CAGGTCGTGCGTTACGCATACGGCGGTGAACCTCTTTGGTCGGCCTCTGA TCCACCGCATGAGGTTATTCCTCCCTGCGAGGGCTGTGGTGAGAACTGCA GCGTTGTTTTTGCTTGTGTTTGGGAGGTTGTGGACCTTGGCTGTCGTACC GCCGTACAGCCATAGACTATTCTCCTTTGATACACGAAATGCCCGAGGGT GGATGTCACGCATTACTTTTGAAGATAATTCGTACTGGTACGAATTATAC TTTCCGTTAAAAATATCCCAAGAAATCCGAAAGCGGGTCAACGAGCGATT CATGAGTCGTCTTAAATGTCCCTATTTCACCTATGTTCTCACAACATGAC ACTTCCGCGCTCCCAGGCACTGCCCGTGTCTTCGAGATGCAGCTAATGCC GGCCCTTTTGTTGCAGCTGCGAGTCGATGAATTTGCCGAGCGAGAAACGC CGAAAATGACATGCGCAGGCACTGGTGATACATCTGTGTGTGGCGTGATA GGGGACTCCACCGCTGCCGAAGCCGGTGGTAGAGAAGAAGACATCAATGG TTCCTCCCTCGTCACAGTCAAGGACAAAGGATTATCACATGCGCCAATTA AGGGTGAAGATCCAAACGACTTTGGACAAGACCAAGATGACTACATCACG CGAAAGGACTACAATGGAAGTCCGGCAATCATGCCGACTCCCAGCGCTGA AGATCGCGAGCGATTGAAGACGTGGGGAATGGACTGGGGGGTGGTTGCGG TTTGGTCTTGCCCGAAAAGCTGCAAAGGTAGTTGTGAAGAATTTGTCGTG GTGCAGTTGCCGGTTTGATACTCATATATTTTTATTTTTTAAAATTGTGG TCGATTTCCTTTCCGGGGTCATATACTTGTAGCTTATGTTACCCAATGTT AGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig11967:4496..7901+

>mRNA_H-elongata_contig11967.1516.1 ID=mRNA_H-elongata_contig11967.1516.1|Name=mRNA_H-elongata_contig11967.1516.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2406bp|location=Sequence derived from alignment at H-elongata_contig11967:4496..7901+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGAACCACCCGTGCCGTCTACTCCTACAATGAGCATCAACCCAGC
GACTGATGCATGGGGAGCAGACACAGGAACATGGGATGATGTAGTGGGAG
GAGACGAATGGGGTGCCGGAGCTGGCGGCTGGGAATGCGAAGCGTTGCTG
GAAAGCTGCGGCGGGTCAAAAGGCGAAGCAACTGCAGCAACAATCGAAGC
CCTGCTAAAGGAGAGAGATAATAGGTTTGCAGAAATGCATAGCAAACGGG
CAGGACGTCTGACCACCCTTGCGTGCCGTAAACCCGCGGCAACAGCTGCA
AGAGGTGATCGCAACGTCGAAATAATTGCGCGACACGTTGTTGACGCGGA
TAACAGGCGGTCGATGCGCCATTGCTTTCCGGCCAAGTTTATGAGCTTCT
TTCCCGAACCGTGGGATCCAAAAGGCAGCGGTATCGACAACGACATGGAG
GAACGTATCCGACGGTATCGAGAGCAAGAGGAAGATCGGGGGCTTGTGGT
CGAGCTTGATAAGGCGCTACGTTGGGGGGCAAGTAACGTGCTCAATAGAC
ATGTCAACTCTGGGAGGGTACGAGTAGCCGCCGTGGGGGAAAAATACGAG
CGCACGCCGGCAAGATGGCCGAACCACCCGTGCCGTCTACTCCTACAATG
AGCATCAACCCAGCGACTGATGCATGGGGAGCAGACACAGGAACATGGGA
TGATGTAGTGGGAGGAGACGAATGGGGTGCCGGAGCTGGCGGCTGGGAAT
GCGAAGCGTTGCTGGAAAGCTGCGGCGGGTCAAAAGGCGAAGCAACTGCA
GCAACAATCGAAGCCCTGCTAAAGGAGAGAGATAATAGGTTTGCAGAAAT
GCATAGCAAACGGGCAGGACGTCTGACCACCCTTGCGTGCCGTAAACCCG
CGGCAACAGCTGCAAGAGGTGATCGCAACGTCGAAATAATTGCGCGACAC
GTTGTTGACGCGGATAACAGGCGGTCGATGCGCCATTGCTTTCCGGCCAA
GTTTATGAGCTTCTTTCCCGAACCGTGGGATCCAAAAGGCAGCGGTATCG
ACAACGACATGGAGGAACGTATCCGACGGTATCGAGAGCAAGAGGAAGAT
CGGGGGCTTGTGGTCGAGCTTGATAAGGCGCTACGTTGGGGGGCAAGTAA
CGTGCTCAATAGACATGTCAACTCTGGGAGGGTACGAGTAGCCGCCGTGG
GGGAAAAATACGAGCGCACGCCGGCAAGGGCGAAGGCCGTCATGCGCTTC
GCGGAAAGGGTCGCTCGATCGCCCCAGCAGGTCGTGCGTTACGCATACGG
CGGTGAACCTCTTTGGTCGGCCTCTGATCCACCGCATGAGGTTATTCCTC
CCTGCGAGGGCTGTGGGCGAAGGCCGTCATGCGCTTCGCGGAAAGGGTCG
CTCGATCGCCCCAGCAGGTCGTGCGTTACGCATACGGCGGTGAACCTCTT
TGGTCGGCCTCTGATCCACCGCATGAGGTTATTCCTCCCTGCGAGGGCTG
TGGCACTGCCCGTGTCTTCGAGATGCAGCTAATGCCGGCCCTTTTGTTGC
AGCTGCGAGTCGATGAATTTGCCGAGCGAGAAACGCCGAAAATGACATGC
GCAGGCACTGGTGATACATCTGTGTGTGGCGTGATAGGGGACTCCACCGC
TGCCGAAGCCGGTGGTAGAGAAGAAGACATCAATGGTTCCTCCCTCGTCA
CAGTCAAGGACAAAGGATTATCACATGCGCCAATTAAGGGTGAAGATCCA
AACGACTTTGGACAAGACCAAGATGACTACATCACGCGAAAGGACTACAA
TGGAAGTCCGGCAATCATGCCGACTCCCAGCGCTGAAGATCGCGAGCGAT
TGAAGACGTGGGGAATGGACTGGGGGGTGGTTGCGGTTTGGTCTTGCCCG
AAAAGCTGCAAAGGTAGTTGTGAAGAATTTGTCGTGGTGCAGTTGCCGGT
TTGAGCACTGCCCGTGTCTTCGAGATGCAGCTAATGCCGGCCCTTTTGTT
GCAGCTGCGAGTCGATGAATTTGCCGAGCGAGAAACGCCGAAAATGACAT
GCGCAGGCACTGGTGATACATCTGTGTGTGGCGTGATAGGGGACTCCACC
GCTGCCGAAGCCGGTGGTAGAGAAGAAGACATCAATGGTTCCTCCCTCGT
CACAGTCAAGGACAAAGGATTATCACATGCGCCAATTAAGGGTGAAGATC
CAAACGACTTTGGACAAGACCAAGATGACTACATCACGCGAAAGGACTAC
AATGGAAGTCCGGCAATCATGCCGACTCCCAGCGCTGAAGATCGCGAGCG
ATTGAAGACGTGGGGAATGGACTGGGGGGTGGTTGCGGTTTGGTCTTGCC
CGAAAAGCTGCAAAGGTAGTTGTGAAGAATTTGTCGTGGTGCAGTTGCCG
GTTTGA
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