mRNA_H-elongata_contig11967.1516.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: D8LNZ1_ECTSI (PDCD2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ1_ECTSI) HSP 1 Score: 357 bits (916), Expect = 3.890e-114 Identity = 249/531 (46.89%), Postives = 302/531 (56.87%), Query Frame = 1
Query: 1 PPRSLCKTFQAWFGEAPVCVDDLVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVRTQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGADTGTWDDVVG-GDXXXXXXXXXECEALLESCGGSKGEATAATIEALLKERDNRFAEMHSKRAGRLTTLACRKPAAT---------------AARGDRNVEIIARHVVDADNRRSM------RHCFPAKFMSFFPEPWDPKGSGIDN-DMEERIRRYREQEEDRGLVVELDKALRW-GASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTCAGTGDTSVCGVIGDSTAAEAGGREEDING-----SSLVTVKDKGLSHAPIKGEDPNDFGQDQDDYIT-------RKDYNGSPAIMPTPSAEDRERLKTWGMDWGVVAVWSCPKSCKGSCEEFVVVQLPV 1485
P +S + AWFGEAPV V DLVC LC R L+LV Q +YAPTH ERSLC+FGCNRAACS+ GWRVVRTQ P+ VEPA + DS +P S P ATD WGA +WD G+ XXXXXX E GG A I+ALL +++ + + + + R + A +T ++ G + + A +D + R CFPAK +SF PEPW + S D+ DME R+RRYREQEEDRGLV LD AL A + + H VA+VGEKYERTPARAKAVMRFA+RVARSPQQVVRYAYGGEPLWSASDPP E IPPC CG RVFEMQLMPALLLQL+V++ AERET + S ST ++ ++ N S V V+ KG A + D + Q + +D +MPTPS E+RERL+T GMDWGVVA+WSCP+SC SCEE VVVQLPV
Sbjct: 28 PDKSKAGGWPAWFGEAPVKVGDLVCGLCGRWLYLVTQ-IYAPTHVERSLCLFGCNRAACSLRPEGWRVVRTQ-APQP-VEPAQD---------DS--DPTAASAPAAH---ATDPWGASDVSWDAPASDGEGWGXXXXXXXXGVDTEGVGG----IATADIDALLDKQEKK--QSSTCQGDRASAAAXXXXXSTGGDTCSSLAELGPNHSSSGSGSQKKSAAESSKSDTVAAEGGDWGGRPCFPAKTVSFVPEPWGAESSRTDDKDMENRLRRYREQEEDRGLVAALDHALGLKDAGGLSSEHGGKEGKAVASVGEKYERTPARAKAVMRFADRVARSPQQVVRYAYGGEPLWSASDPPREEIPPC-ACGATRVFEMQLMPALLLQLQVNDLAERETGSLEGGSPATFSGLESKKISTLSQVADGHDNNNTLKSITPSAVAVQPKGA--ASTRSTDEHGVAQGDGSGVLAGIGVSGEEDEGNETTMMPTPSVEERERLRTLGMDWGVVAIWSCPRSCSISCEECVVVQLPV 532
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A6G0XPA3_9STRA (PDCD2_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPA3_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.750e-23 Identity = 118/379 (31.13%), Postives = 161/379 (42.48%), Query Frame = 1
Query: 31 AWF-GEAPVCVDDLVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVRTQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGADTGT------WDDVVGGDXXXXXXXXXECEALLESCGGSKGEATAATI--EALLKERDNRFAEMHSKRAGRLTTLACRKPAATAARGDRNVEIIARHVVDADNRRSMRHCFPAKFMSFFPEPWDPKGSGIDNDMEER--IRRYREQEEDRGL--VVELDKALRW-----GASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAER 1113
AW+ + + + LVC C + L+LVAQ VYAP R+L FGCN + C WRV R Q EN E A+ VE PP P + +T WG D+G W DV G S GS+ + + + E LL RD H+ ++ R+ PA + + V I H F + ++S EP SG++ E + Y E+EE L + L+ G+S+ H S YERTP R K +RF +R+ RSP Q +RY YGGEPLW S PP IP C CG R+FEMQL+P L+V+ + E+
Sbjct: 33 AWYDNKKAIAQEQLVCPKCQKSLYLVAQ-VYAPVTTHRTLYAFGCNSSKCGDTPKSWRVFRFQ-AEEN--ESKASDVET----------PPAP------VTISTGGWGNDSGDEDDADDWGDVPG------------------STWGSQATSASTNVDLEELLSARD------HALQSTRVQQQPTSTPAKPEEQPPQPVHIDGPH-------------FQSIYLSVEDEP---VVSGVEKYHHETQLLNAYLEEEEKENASEATRLRQILKSKGESSGSSDSQGEHAES-----------YERTPLREKLFLRFQKRIKRSPNQCLRYNYGGEPLWP-SPPPQLEIPKCP-CGEPRMFEMQLIPTTNYFLKVENYIEK 338
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A8K1CFZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFZ9_PYTOL) HSP 1 Score: 110 bits (276), Expect = 1.560e-22 Identity = 136/508 (26.77%), Postives = 175/508 (34.45%), Query Frame = 1
Query: 31 AWFG-EAPVCVDDLVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVR----TQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGADTGTWDDVVGGDXXXXXXXXXECEALLESCGGSKGEATAATIEALLKERDNRFAEMHSKRAGRLT-------------------TLACRKPAATAARGD-RNVEIIARHVVDADNRRSMRHCFPAKFMSFFPEPWDPKGSGIDNDME-ERIRRYREQEEDRGLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTCAGTGDTSVCGVIGDSTAAEAGGREEDINGSSLVTVKDKGLSHAPIKGEDPNDFGQDQDDYITRKDYNGSPAIMPTPSAEDRERLKTWGMDWGVVAVWSCPKSCKGSCEEFVVVQ 1476
AW+G + P L C+ C + LF VAQ VYAP +R+L VFGCN C+ WRV R TQ LP EPAA A W DD + E LL+ + ++A PAA A NV H V FP+ ++ EP+ D E E ++ Y QEE+ +++ R AS + GE YERTPA+ K MRF +R++R P QV+RY YGGEPLW A + +P C CG R FE QL P + L+VDEFA ++ +HA K + D + PA PT S GMDW V V+SCPKSC+ S EEF VQ
Sbjct: 33 AWYGADGPSDAKTLTCQKCKQSLFHVAQ-VYAPVESDRTLYVFGCNSPECTDAPGSWRVFRDQVDTQPLPAAVSEPAAVTSTAXXX---------------XXXXXXXSDWS------DDEEDKAVSSVTEGLNDLELLLQQRDDAMKTSSAPVTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPIAAPAAPVANAKPTNVSKAPAHKVSPAG-----DVFPSLYIDVIDEPFVDYAKENDFSHENELLQEYMRQEEEEK-SNDVNDLRRIIASXXXXXXXXXXXXXXXSSGESYERTPAQQKHFMRFQKRISRCPLQVLRYDYGGEPLWPAPPARNLKVPRCP-CGEERAFEFQLTPTINYFLKVDEFAAKKLE--------------------------------------------AHAVPK----------------KSDSDAPPASAPTQSGG--------GMDWASVVVYSCPKSCQQSREEFAYVQ 443
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A485L176_9STRA (Aste57867_13990 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L176_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.730e-18 Identity = 114/371 (30.73%), Postives = 151/371 (40.70%), Query Frame = 1
Query: 31 AWFGEAPVCVDD-LVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVRTQ--KLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSI--NPATDAWGADTGTW--DDVVGGDXXXXXXXXXECEALLESCGGSKGEATAATIEALLKERDNRFAEMHSKRAGRLTTLACRKPAATAARGDRNVEIIARHVVDADNRRSMRHCFPAKFMSFFPEPWDPKGSGID--NDMEERIRRY--REQEEDRGLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAE 1110
AWF EA + LVC C LFLVAQ VYAP R+L +FGCN + C + WRV R Q + VEP A + +T AWGA T DDV +E LLK RD +TT+ K +A++ R VE A + S FP+ +++ EP SG+ N + + Y E++E+ V L L+ V G E YERTP R K ++F +R+ RSP Q +RY YGG+PLW S PP V+P C CG R FEMQLMP L+V+ + +
Sbjct: 31 AWFSEATSFPESQLVCPKCQSQLFLVAQ-VYAPVTSPRTLYIFGCNSSKCGDSPNSWRVFRFQIDEAEVESVEPVAVAAXXXXXXXXXXXXXXXXXXXXXXGWGDASTSAWGAAVPTTSNDDV--------------------------------DLEELLKVRDTAM----------VTTV---KASASSTR----VETKAATPTPTYHGPS----FPSIYLNVDDEP---AASGVQKYNHETQLLNAYLAEEEKENASEVARLRTMLKSKTDVVAPSEGQGGEY-----AESYERTPLREKLFLKFQKRIKRSPNQCLRYNYGGQPLWP-SPPPKLVVPNCT-CGEPRTFEMQLMPMTNYFLKVENYVQ 337
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A7S4IB63_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IB63_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.850e-17 Identity = 75/220 (34.09%), Postives = 92/220 (41.82%), Query Frame = 1
Query: 874 EKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSAS--DPPHEV-----------------IPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTCAGTGDTSVCGVIGDSTAAEAGGREEDINGSSLVTVKDKGLSHAPIKGEDPNDFGQDQDDYITRKDYNGSPAIMPTPSAEDRERLKTWGMDWGVVAVWSCPKSCKGSCEEFVVVQ 1476
EKYER P +A + F ER+ R+P+QVVRYAYGG PLWS PP + +PPC GCG+ R FEMQL PALLL L VD A T + +A E GREE+ G S +G D G GM+WG +AV+ CP SC GS E +V+Q
Sbjct: 160 EKYERLPPDQRAFLTFTERMRRAPRQVVRYAYGGVPLWSVPTPSPPSKKEKRNRGRKSARRTQFPSVPPCTGCGSERTFEMQLAPALLLALDVDGHALLPT---------------LASSVSAGEGEGREEE--GGS--------------RGVDGGGEG---------------------------------GMNWGSIAVYCCPLSCDGSRGEALVMQ 315
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A2D4BDN7_PYTIN (PDCD2_C domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDN7_PYTIN) HSP 1 Score: 92.4 bits (228), Expect = 4.390e-17 Identity = 63/154 (40.91%), Postives = 85/154 (55.19%), Query Frame = 1
Query: 661 FPAKFMSFFPEPWDPKGSGIDNDME-ERIRRY-REQEEDRGLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERE 1116
FPA F+ EP++ + D E E +++Y R++EED+ V LR +N + A+ GE YERTPA+ K MRF +R+ R P QV+RY YGGEPLW P IP C CG R FE+QL P + L+VDEFA ++
Sbjct: 98 FPALFIDVIDEPYEDFKTESDYSHENELLQQYMRQEEEDKSTDV---NDLRRIIANAKKSDGSVSGSAAASSGESYERTPAQQKHFMRFQKRINRCPLQVLRYDYGGEPLWPTPMPRGLKIPRC-ACGEERAFELQLTPTINYFLKVDEFAAKQ 247
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: L1J492_GUITC (PDCD2_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J492_GUITC) HSP 1 Score: 84.3 bits (207), Expect = 1.480e-14 Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 871 GEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTCAGTGDTSVCGVIGDSTAAEAGGREED 1212
GE++E T K +F +RVAR+P+QV+RY + GEPLW +S+ +PPC CG++RV+EMQ MP L +L V+ FA + M C S G S A+ G ED
Sbjct: 142 GEEHESTKGD-KQFRKFRKRVARAPEQVLRYCWNGEPLWQSSEAQCTEVPPCPRCGSSRVYEMQAMPGLFYELGVEAFAPKGDEGMDCGVAIIYSCSSSCGSSGQADGDGSGED 254
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A7S4PEL0_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PEL0_GUITH) HSP 1 Score: 86.3 bits (212), Expect = 1.600e-14 Identity = 92/388 (23.71%), Postives = 165/388 (42.53%), Query Frame = 1
Query: 67 LVCRLCDRDLFLVAQQVYAPTHFERSLCVFGCNRAACSVHSHGWRVVRTQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGA-DTGTWDD-------------VVGGDXXXXXXXXXECEALLESCGGSKGEATAATIEALL--------KERDNRFAEMHSKRAGRLTTLACRKPAATAARGDRN----VEIIARHV-VDADNRRS-----MRHCFPAKFMSFFPEPWDPKGSGIDNDMEERIRRYREQEEDRGLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTC 1134
+ C C+ +L+L+ Q R+L +F C R+ C W+ +R QK + ++ + +S +P P + + A AWG D W++ GG E +E G +++ + ++ + + A+ S +AGR + + A D V ++A +AD+ S ++ FP ++ + EP + + ++ + +Y+E E +V EL++ G++ + + GE++E T K +F +RVAR+P+QV+RY + GEPLW +S+ +PPC CG++RV+EMQ MP L +L V+ FA + M C
Sbjct: 34 ITCDACNNNLYLLLQLNTDTNVLRRNLYLFACVRSKCQSQPGSWKALRVQKRWNKLDDDISSEHQQVKVQPNSKPQP----RPLFTKDDA--AWGCEDASDWNEGGAVALPQPAAACSDGGKSSAPEGDAGEDNWGMEEAGDRSIPQDLLSLQQKVQDMKMNAGRDAEGQHADAESDKAGRRRKKKGKNQSGAKAGLDVGAAEFVPVMAGGFNAEADSHSSNQGEQVKAFFPCYYIEYDAEP--------EPEEDKDLAKYKELAEQ--VVAELNETSGGGSAALWS-------------GEEHESTKGD-KQFRKFRKRVARAPEQVLRYCWNGEPLWQSSEAQCTEVPPCPRCGSSRVYEMQAMPGLFYELGVEAFAPKGDEAMDC 391
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: A0A7S4PFU5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PFU5_GUITH) HSP 1 Score: 81.3 bits (199), Expect = 1.890e-14 Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 871 GEKYERTPARAKAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPPCEGCGTARVFEMQLMPALLLQLRVDEFAERETPKMTC 1134
GE++E T K +F +RVAR+P+QV+RY + GEPLW +S+ +PPC CG++RV+EMQ MP L +L V+ FA + M C
Sbjct: 69 GEEHESTKGD-KQFRKFRKRVARAPEQVLRYCWNGEPLWQSSEAQCTEVPPCPRCGSSRVYEMQAMPGLFYELGVEAFAPKGDEAMDC 155
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Match: UPI00140218EA (programmed cell death protein 2-like isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140218EA) HSP 1 Score: 83.2 bits (204), Expect = 1.820e-13 Identity = 110/390 (28.21%), Postives = 154/390 (39.49%), Query Frame = 1
Query: 1 PPRSLCKTFQAWFGEAPVCVDDL------VCRLCDRDLFLVAQQVYAPTH---FERSLCVFGCNRAACSVHSHGWRVVRTQKLPENYVEPAANCVEAQNATTDSMAEPPVPSTPTMSINPATDAWGADTGTWDDVVGGDXXXXXXXXXECEALLESCGGSKGEATAATIEALLKERDNRFAEM--HSKRAGRLTTLACRKPAATAARGDRNVEIIARHVVDADNRRSMRHCFPA-KFMSFFPEPWDPKGSGIDNDMEER---------IRRYREQEEDR-GLVVELDKALRWGASNVLNRHVNSGRVRVAAVGEKYERTPARA--KAVMRFAERVARSPQQVVRYAYGGEPLWSASDPPHEVIPP--CEGCGTARVFEMQLMPALLLQLR 1092
PPRS G P CV + C C LVAQ +Y P + R+L + C RA CS + GWR +R+Q Y+EPA V A P P+ P + +T W W D V GD G+A A + L + R ++ H + C + G R I A R PA + +++F + + +EE + Y+ +E GLV + W S+ G V E+YE AR + ++F +R AR P+QV+RY++GGEPL+ ++ PH PP C CG RVFEMQLMPAL+ QLR
Sbjct: 20 PPRSATSWSCNKIGGEPDCVPGVPLVGRTACGACGSAQTLVAQ-LYCPLEGSPYHRALHLLACPRATCSTSARGWRALRSQ-----YLEPA-RAVPA-----------PAPTPPQVEPLMSTKDWCDGADDWGDDVDGDA---------------------GDAPAQAVP--LPDSTARVPQLPPHPSPSPNPAMELCPGMDGLSLGGGR--AIAAXXXXXXAMPRPQESGEPAPRLLAYFLNAVSEEDCAEEEGVEEAELTQHARALLSEYQRREGGADGLVAAQQQP--WQGSDS-----GGGSGGVGGAREEYEPACARHGDRLFLKFMKRTARCPRQVLRYSWGGEPLYVSAPDPHLTAPPTPCPLCGAPRVFEMQLMPALVWQLR 359 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11967.1516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11967.1516.1 >prot_H-elongata_contig11967.1516.1 ID=prot_H-elongata_contig11967.1516.1|Name=mRNA_H-elongata_contig11967.1516.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=401bp MAEPPVPSTPTMSINPATDAWGADTGTWDDVVGGDEWGAGAGGWECEALLback to top mRNA from alignment at H-elongata_contig11967:4496..7901+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11967.1516.1 ID=mRNA_H-elongata_contig11967.1516.1|Name=mRNA_H-elongata_contig11967.1516.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3406bp|location=Sequence derived from alignment at H-elongata_contig11967:4496..7901+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11967:4496..7901+ >mRNA_H-elongata_contig11967.1516.1 ID=mRNA_H-elongata_contig11967.1516.1|Name=mRNA_H-elongata_contig11967.1516.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2406bp|location=Sequence derived from alignment at H-elongata_contig11967:4496..7901+ (Himanthalia elongata Himel1 dioecious)back to top |