mRNA_H-elongata_contig119572.1508.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119572.1508.1
Unique NamemRNA_H-elongata_contig119572.1508.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0JZL8_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZL8_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 5.880e-67
Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = 1
Query:    1 KTYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGSSCDN 327
            KTYYF LASNDFLF EEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEM+ELRNKLD SKSYSAIVSTDEIF+RWLKLRLLNVATGKF+GPTSAIPSPLGSSCD+
Sbjct:   58 KTYYFVLASNDFLFSEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMQELRNKLDSSKSYSAIVSTDEIFVRWLKLRLLNVATGKFAGPTSAIPSPLGSSCDD 166          
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0JXV7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JXV7_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.310e-33
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
            TY+F +ASNDFL   EP+EEILRER Q+Y+R+   +DFW ++SPKFL++ ++  L+ KL  SK  SAIVS D+ F+ WLKLRL NVA G FS PT  I SPL S
Sbjct:    9 TYHFIVASNDFLLVAEPVEEILRERVQHYRRVKKTIDFWFVKSPKFLESTQLTNLQTKL--SKDSSAIVSLDKSFVTWLKLRLNNVAVGSFSAPTEDITSPLAS 110          
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A516ICN5_9PHAE (Ycf54 n=7 Tax=Laminariales TaxID=2886 RepID=A0A516ICN5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 5.720e-33
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSK---SYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
            TYYF +ASN+FL   EP+EEILRER Q+Y+R+   +DFWL++SPKFL+++++ +L+ KL  ++     SAIVS D+ FI WLKLRL NVA G FS PT  I SPL S
Sbjct:    9 TYYFIVASNEFLLVTEPVEEILRERVQHYRRVKKNIDFWLVQSPKFLESVQLIDLQTKLTQARIANQCSAIVSVDKTFITWLKLRLNNVAIGSFSAPTGDIKSPLAS 115          
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0JZN3_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZN3_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 8.090e-33
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
            TYYF LAS+DFL   EP+EEILRER Q+Y+RI    +FWLIRSPKF+++ ++ +LR K+  SK  SA+VS D+ FI WLKLRL NVA G F  PT  I SPL S
Sbjct:    9 TYYFILASSDFLLVTEPVEEILRERVQHYRRIKKSTNFWLIRSPKFMESNQLVDLRGKV--SKDCSAVVSLDKSFITWLKLRLNNVAVGSFVAPTDDITSPLAS 110          
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0FBA1_9PHAE (Uncharacterized protein n=10 Tax=Laminariales TaxID=2886 RepID=A0A8F0FBA1_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.630e-32
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSK---SYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
            TYYF +AS+DFL   EP+EEILRER Q+Y+R+   +DFWL++SPKFL+++++ +L+ KL  ++     SAIVS D+ FI WLKLRL NVA G F+ PT  I SPL S
Sbjct:    9 TYYFIVASSDFLLVAEPVEEILRERVQHYRRVKKNIDFWLVQSPKFLESVQLTDLQTKLRQARIANECSAIVSVDKTFITWLKLRLNNVAMGSFTAPTGDITSPLAS 115          
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0FB57_COSCS (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FB57_COSCS)

HSP 1 Score: 116 bits (290), Expect = 2.530e-31
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSK---SYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
            TYYF +AS++FL   EP+EEILRER Q+Y+R+   +DFWL++SPKFL ++++ +L+ KL  ++     SAIVS D+ FI WLKLRL NVA G F  PT  I SPL S
Sbjct:    9 TYYFIVASSEFLLVAEPVEEILRERVQHYRRMKKNIDFWLVQSPKFLDSVQLTDLQTKLTQARIADECSAIVSVDKTFITWLKLRLNNVAMGSFKAPTGDITSPLAS 115          
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8E6D4X3_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4X3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 6.820e-31
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    7 YYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPL 309
            YYF  ASN FL   EP+EEILRER Q+YKRI  P+DFWL+RSP FLQ+ +M+E ++ L  +    AIVST + FI WLKLRL +VA G+F  PT  IP PL
Sbjct:   18 YYFVAASNKFLLLSEPLEEILRERVQHYKRIKKPIDFWLLRSPAFLQSEQMKEFKDSL--ANDCCAIVSTQQSFIVWLKLRLNHVAKGEFFAPTLDIPKPL 116          
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A1C9CH76_PALPL (Uncharacterized protein n=3 Tax=Palmaria TaxID=2821 RepID=A0A1C9CH76_PALPL)

HSP 1 Score: 110 bits (275), Expect = 2.850e-29
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLG 312
            TYYFA+AS DFL  EEPIEEILRER  +YK IN  +DFWLI +P F+   EM  ++ +L+  K   AIVS + +FI WLKLRL  V+TG F  P+++IP PLG
Sbjct:    3 TYYFAIASQDFLLKEEPIEEILRERINHYKSINKVIDFWLIVNPIFINAPEMSIIKKQLN--KPSVAIVSKNPVFITWLKLRLGFVSTGNFCAPSTSIPDPLG 103          
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A3G3MHP9_9FLOR (Uncharacterized protein n=1 Tax=Renouxia sp. TaxID=2485823 RepID=A0A3G3MHP9_9FLOR)

HSP 1 Score: 108 bits (270), Expect = 1.890e-28
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGSS 318
            TYYFA+AS DFL  EEPIEEILRER  +YK  N  +DFW +  P FL    M ++R++L   K  +A+VS +  FI+WLKLRL+ V TG F  P+  IP+PLG S
Sbjct:    3 TYYFAVASQDFLLSEEPIEEILRERTNHYKSFNKRIDFWFVTDPLFLDASSMSQIRDQL--LKPSAAVVSLNPKFIQWLKLRLVFVITGNFQAPSIEIPNPLGPS 105          
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A1Z3HG94_9CYAN (Ycf54 protein n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HG94_9CYAN)

HSP 1 Score: 107 bits (267), Expect = 5.110e-28
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 KTYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELR-NKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
            +TYY+A+AS  FL  EEP++E+LRER ++Y+  N P+DFWLI+ P FLQ  E+ E+R N   P+   +AIVST++ FI WLKLRL  VA G F  P+  IP PL S
Sbjct:    2 QTYYYAIASQRFLIEEEPLDEVLRERTRHYQEQNRPIDFWLIKQPAFLQAPELAEVRANCPQPA---AAIVSTNQSFITWLKLRLEYVAVGSFEAPSDTIPEPLAS 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZL8_9PHAE5.880e-6793.58Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]
A0A8F0JXV7_9PHAE2.310e-3357.69Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A516ICN5_9PHAE5.720e-3356.07Ycf54 n=7 Tax=Laminariales TaxID=2886 RepID=A0A516... [more]
A0A8F0JZN3_9PHAE8.090e-3359.62Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A8F0FBA1_9PHAE1.630e-3255.14Uncharacterized protein n=10 Tax=Laminariales TaxI... [more]
A0A8F0FB57_COSCS2.530e-3154.21Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A8E6D4X3_9PHAE6.820e-3158.42Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]
A0A1C9CH76_PALPL2.850e-2956.31Uncharacterized protein n=3 Tax=Palmaria TaxID=282... [more]
A0A3G3MHP9_9FLOR1.890e-2853.33Uncharacterized protein n=1 Tax=Renouxia sp. TaxID... [more]
A0A1Z3HG94_9CYAN5.110e-2852.83Ycf54 protein n=1 Tax=Halomicronema hongdechloris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119572contigH-elongata_contig119572:1273..1605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score105.9
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog65093.PCC7418_2595
Preferred nameycf54
EggNOG free text desc.InterPro IPR019616
EggNOG OGs1G6QT@1117,2AIVE@1,319CP@2
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.7608008-CDS-H-elongata_contig119572:1272..16051622929699.7608008-CDS-H-elongata_contig119572:1272..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119572 1273..1605 -
1691679123.8029902-CDS-H-elongata_contig119572:1272..16051691679123.8029902-CDS-H-elongata_contig119572:1272..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119572 1273..1605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119572.1508.1prot_H-elongata_contig119572.1508.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119572 1273..1605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119572.1508.1

>prot_H-elongata_contig119572.1508.1 ID=prot_H-elongata_contig119572.1508.1|Name=mRNA_H-elongata_contig119572.1508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
KTYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQT
LEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIP
SPLGSSCDNT*
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mRNA from alignment at H-elongata_contig119572:1273..1605-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119572.1508.1 ID=mRNA_H-elongata_contig119572.1508.1|Name=mRNA_H-elongata_contig119572.1508.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig119572:1273..1605- (Himanthalia elongata Himel1 dioecious)
AAGACTTATTACTTTGCTCTTGCAAGTAATGATTTTTTATTCTTTGAGGA ACCAATTGAAGAAATATTGCGTGAACGATATCAATATTATAAAAGAATTA ATTTACCTCTGGATTTTTGGTTAATACGTTCACCAAAATTTTTACAAACT TTGGAAATGGAAGAGTTAAGAAATAAGCTTGACCCCTCAAAGTCTTATTC AGCTATTGTTTCAACAGATGAAATTTTTATTAGATGGTTAAAATTAAGAT TACTTAACGTTGCCACTGGAAAATTTTCTGGACCAACATCCGCAATACCA AGTCCTTTAGGATCGAGTTGTGATAATACATAA
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Coding sequence (CDS) from alignment at H-elongata_contig119572:1273..1605-

>mRNA_H-elongata_contig119572.1508.1 ID=mRNA_H-elongata_contig119572.1508.1|Name=mRNA_H-elongata_contig119572.1508.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig119572:1273..1605- (Himanthalia elongata Himel1 dioecious)
AAGACTTATTACTTTGCTCTTGCAAGTAATGATTTTTTATTCTTTGAGGA
ACCAATTGAAGAAATATTGCGTGAACGATATCAATATTATAAAAGAATTA
ATTTACCTCTGGATTTTTGGTTAATACGTTCACCAAAATTTTTACAAACT
TTGGAAATGGAAGAGTTAAGAAATAAGCTTGACCCCTCAAAGTCTTATTC
AGCTATTGTTTCAACAGATGAAATTTTTATTAGATGGTTAAAATTAAGAT
TACTTAACGTTGCCACTGGAAAATTTTCTGGACCAACATCCGCAATACCA
AGTCCTTTAGGATCGAGTTGTGATAATACATAAAAGACTTATTACTTTGC
TCTTGCAAGTAATGATTTTTTATTCTTTGAGGAACCAATTGAAGAAATAT
TGCGTGAACGATATCAATATTATAAAAGAATTAATTTACCTCTGGATTTT
TGGTTAATACGTTCACCAAAATTTTTACAAACTTTGGAAATGGAAGAGTT
AAGAAATAAGCTTGACCCCTCAAAGTCTTATTCAGCTATTGTTTCAACAG
ATGAAATTTTTATTAGATGGTTAAAATTAAGATTACTTAACGTTGCCACT
GGAAAATTTTCTGGACCAACATCCGCAATACCAAGTCCTTTAGGATCGAG
TTGTGATAATACATAA
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