mRNA_H-elongata_contig119572.1508.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0JZL8_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZL8_9PHAE) HSP 1 Score: 207 bits (528), Expect = 5.880e-67 Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = 1
Query: 1 KTYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGSSCDN 327
KTYYF LASNDFLF EEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEM+ELRNKLD SKSYSAIVSTDEIF+RWLKLRLLNVATGKF+GPTSAIPSPLGSSCD+
Sbjct: 58 KTYYFVLASNDFLFSEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMQELRNKLDSSKSYSAIVSTDEIFVRWLKLRLLNVATGKFAGPTSAIPSPLGSSCDD 166
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0JXV7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JXV7_9PHAE) HSP 1 Score: 121 bits (303), Expect = 2.310e-33 Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 1
Query: 4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
TY+F +ASNDFL EP+EEILRER Q+Y+R+ +DFW ++SPKFL++ ++ L+ KL SK SAIVS D+ F+ WLKLRL NVA G FS PT I SPL S
Sbjct: 9 TYHFIVASNDFLLVAEPVEEILRERVQHYRRVKKTIDFWFVKSPKFLESTQLTNLQTKL--SKDSSAIVSLDKSFVTWLKLRLNNVAVGSFSAPTEDITSPLAS 110
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A516ICN5_9PHAE (Ycf54 n=7 Tax=Laminariales TaxID=2886 RepID=A0A516ICN5_9PHAE) HSP 1 Score: 120 bits (301), Expect = 5.720e-33 Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 1
Query: 4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSK---SYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
TYYF +ASN+FL EP+EEILRER Q+Y+R+ +DFWL++SPKFL+++++ +L+ KL ++ SAIVS D+ FI WLKLRL NVA G FS PT I SPL S
Sbjct: 9 TYYFIVASNEFLLVTEPVEEILRERVQHYRRVKKNIDFWLVQSPKFLESVQLIDLQTKLTQARIANQCSAIVSVDKTFITWLKLRLNNVAIGSFSAPTGDIKSPLAS 115
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0JZN3_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZN3_9PHAE) HSP 1 Score: 119 bits (299), Expect = 8.090e-33 Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 1
Query: 4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
TYYF LAS+DFL EP+EEILRER Q+Y+RI +FWLIRSPKF+++ ++ +LR K+ SK SA+VS D+ FI WLKLRL NVA G F PT I SPL S
Sbjct: 9 TYYFILASSDFLLVTEPVEEILRERVQHYRRIKKSTNFWLIRSPKFMESNQLVDLRGKV--SKDCSAVVSLDKSFITWLKLRLNNVAVGSFVAPTDDITSPLAS 110
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0FBA1_9PHAE (Uncharacterized protein n=10 Tax=Laminariales TaxID=2886 RepID=A0A8F0FBA1_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.630e-32 Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = 1
Query: 4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSK---SYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
TYYF +AS+DFL EP+EEILRER Q+Y+R+ +DFWL++SPKFL+++++ +L+ KL ++ SAIVS D+ FI WLKLRL NVA G F+ PT I SPL S
Sbjct: 9 TYYFIVASSDFLLVAEPVEEILRERVQHYRRVKKNIDFWLVQSPKFLESVQLTDLQTKLRQARIANECSAIVSVDKTFITWLKLRLNNVAMGSFTAPTGDITSPLAS 115
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8F0FB57_COSCS (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FB57_COSCS) HSP 1 Score: 116 bits (290), Expect = 2.530e-31 Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSK---SYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
TYYF +AS++FL EP+EEILRER Q+Y+R+ +DFWL++SPKFL ++++ +L+ KL ++ SAIVS D+ FI WLKLRL NVA G F PT I SPL S
Sbjct: 9 TYYFIVASSEFLLVAEPVEEILRERVQHYRRMKKNIDFWLVQSPKFLDSVQLTDLQTKLTQARIADECSAIVSVDKTFITWLKLRLNNVAMGSFKAPTGDITSPLAS 115
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A8E6D4X3_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4X3_9PHAE) HSP 1 Score: 115 bits (287), Expect = 6.820e-31 Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 7 YYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPL 309
YYF ASN FL EP+EEILRER Q+YKRI P+DFWL+RSP FLQ+ +M+E ++ L + AIVST + FI WLKLRL +VA G+F PT IP PL
Sbjct: 18 YYFVAASNKFLLLSEPLEEILRERVQHYKRIKKPIDFWLLRSPAFLQSEQMKEFKDSL--ANDCCAIVSTQQSFIVWLKLRLNHVAKGEFFAPTLDIPKPL 116
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A1C9CH76_PALPL (Uncharacterized protein n=3 Tax=Palmaria TaxID=2821 RepID=A0A1C9CH76_PALPL) HSP 1 Score: 110 bits (275), Expect = 2.850e-29 Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLG 312
TYYFA+AS DFL EEPIEEILRER +YK IN +DFWLI +P F+ EM ++ +L+ K AIVS + +FI WLKLRL V+TG F P+++IP PLG
Sbjct: 3 TYYFAIASQDFLLKEEPIEEILRERINHYKSINKVIDFWLIVNPIFINAPEMSIIKKQLN--KPSVAIVSKNPVFITWLKLRLGFVSTGNFCAPSTSIPDPLG 103
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A3G3MHP9_9FLOR (Uncharacterized protein n=1 Tax=Renouxia sp. TaxID=2485823 RepID=A0A3G3MHP9_9FLOR) HSP 1 Score: 108 bits (270), Expect = 1.890e-28 Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 4 TYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELRNKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGSS 318
TYYFA+AS DFL EEPIEEILRER +YK N +DFW + P FL M ++R++L K +A+VS + FI+WLKLRL+ V TG F P+ IP+PLG S
Sbjct: 3 TYYFAVASQDFLLSEEPIEEILRERTNHYKSFNKRIDFWFVTDPLFLDASSMSQIRDQL--LKPSAAVVSLNPKFIQWLKLRLVFVITGNFQAPSIEIPNPLGPS 105
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Match: A0A1Z3HG94_9CYAN (Ycf54 protein n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HG94_9CYAN) HSP 1 Score: 107 bits (267), Expect = 5.110e-28 Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 1 KTYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTLEMEELR-NKLDPSKSYSAIVSTDEIFIRWLKLRLLNVATGKFSGPTSAIPSPLGS 315
+TYY+A+AS FL EEP++E+LRER ++Y+ N P+DFWLI+ P FLQ E+ E+R N P+ +AIVST++ FI WLKLRL VA G F P+ IP PL S
Sbjct: 2 QTYYYAIASQRFLIEEEPLDEVLRERTRHYQEQNRPIDFWLIKQPAFLQAPELAEVRANCPQPA---AAIVSTNQSFITWLKLRLEYVAVGSFEAPSDTIPEPLAS 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119572.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119572.1508.1 >prot_H-elongata_contig119572.1508.1 ID=prot_H-elongata_contig119572.1508.1|Name=mRNA_H-elongata_contig119572.1508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp KTYYFALASNDFLFFEEPIEEILRERYQYYKRINLPLDFWLIRSPKFLQTback to top mRNA from alignment at H-elongata_contig119572:1273..1605- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119572.1508.1 ID=mRNA_H-elongata_contig119572.1508.1|Name=mRNA_H-elongata_contig119572.1508.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig119572:1273..1605- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119572:1273..1605- >mRNA_H-elongata_contig119572.1508.1 ID=mRNA_H-elongata_contig119572.1508.1|Name=mRNA_H-elongata_contig119572.1508.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig119572:1273..1605- (Himanthalia elongata Himel1 dioecious)back to top |