mRNA_H-elongata_contig119568.1506.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI) HSP 1 Score: 129 bits (323), Expect = 4.680e-33 Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1
Query: 1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
RLDVLVYADMNSEPISHFLG+SRLARVQAVFWGNPITTGNPSIDYFVS EV+E ++RT L D DEPYSEQ L
Sbjct: 544 RLDVLVYADMNSEPISHFLGYSRLARVQAVFWGNPITTGNPSIDYFVSTEVMEGQHRTALSDKDEPYSEQSL 615
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: D7FK41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK41_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 9.000e-23 Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
+LDVL++AD EP+SHFL R+A +QA FWG PITTG+P+IDYF+SA+V+E +RT + D+PYSEQV+
Sbjct: 55 KLDVLIFADTTCEPVSHFLALGRVAPIQAAFWGTPITTGSPNIDYFLSADVMEHPDRTTMLPDDDPYSEQVV 126
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A6H5L3P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P9_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 3.140e-22 Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 1
Query: 1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
+LDVL++AD EP+SHFL R+A +QA FWG PITTG+P+IDYF+SA+ +E +RT + D+PYSEQV+
Sbjct: 60 KLDVLIFADTTCEPVSHFLALGRVAPIQAAFWGTPITTGSPNIDYFLSADAMEHPDRTTMLPDDDPYSEQVV 131
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A7S1UEU8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEU8_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 5.550e-22 Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 7 DVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
DVLV+AD+NSEP+SHF+ +SR+A +Q VFWGNP+T+GNPSIDYFVSA+ +E RT + +PYSEQV+
Sbjct: 67 DVLVFADLNSEPMSHFMAYSRIAPLQMVFWGNPLTSGNPSIDYFVSADRMEFAKRTRVSPDLDPYSEQVV 136
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A7S3K5W7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5W7_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.200e-20 Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNP-SIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
RLDVL+YADM SEP+++FLGF+RLA +Q +FWGNP+T+G IDY++SA+++E RT L S EPYSEQ++
Sbjct: 527 RLDVLIYADMLSEPMTYFLGFARLAPIQMLFWGNPVTSGRGMEIDYYISADIMEAPERTKLPPSLEPYSEQLV 599
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A6S8RMR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RMR4_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 7.200e-19 Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
+LDVLV+ADM SEP+S+FLGFSR A VQ FWGNP+TTG SIDYFVSA+ +E RT+ D +SEQV+
Sbjct: 583 KLDVLVFADMLSEPMSYFLGFSRFAPVQVCFWGNPLTTGRSSIDYFVSADRMEHPYRTLAGDE---WSEQVV 651
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A7S3ZLD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLD0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 7.230e-19 Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
+LDVLV+ADM SEP+S+FLGFSR A VQ FWGNP+TTG SIDYFVSA+ +E RT+ D +SEQV+
Sbjct: 583 KLDVLVFADMLSEPMSYFLGFSRFAPVQVCFWGNPLTTGRSSIDYFVSADRMEHPYRTLAGDE---WSEQVV 651
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A067CWJ1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CWJ1_SAPPC) HSP 1 Score: 82.4 bits (202), Expect = 1.050e-16 Identity = 38/71 (53.52%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 4 LDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
LDVLV+AD+ S+P+++F F RLARVQA+FWGNP T+GN +IDYFVS+E+L+ + + Y+EQV+
Sbjct: 508 LDVLVFADIMSDPVNYFTAFGRLARVQALFWGNPTTSGNAAIDYFVSSELLDAAMDPEETEDGDHYTEQVV 578
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A485KTM2_9STRA (Aste57867_11675 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTM2_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.050e-16 Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
+LDVLV+AD+ SEPI+++ F+RLA VQA FWGNP T+G PSIDYF+SA+ +E M+ + YSEQV+
Sbjct: 531 QLDVLVFADIMSEPINYYAAFARLAHVQAAFWGNPTTSGIPSIDYFISADAMESSPDPMI---EVHYSEQVV 599
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A024UQX4_9STRA (Protein O-GlcNAc transferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQX4_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.660e-16 Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
+LDVLV+AD+ SEP+++F F RLA VQA FWGNP T+G P++DYF+SA+V+E + D YSEQV+
Sbjct: 512 QLDVLVFADLMSEPMTYFSAFGRLAHVQAAFWGNPTTSGIPTVDYFISADVMESSPDPAV---DAHYSEQVV 580 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119568.1506.1 >prot_H-elongata_contig119568.1506.1 ID=prot_H-elongata_contig119568.1506.1|Name=mRNA_H-elongata_contig119568.1506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp MNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMback to top mRNA from alignment at H-elongata_contig119568:492..1254- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119568.1506.1 ID=mRNA_H-elongata_contig119568.1506.1|Name=mRNA_H-elongata_contig119568.1506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=763bp|location=Sequence derived from alignment at H-elongata_contig119568:492..1254- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119568:492..1254- >mRNA_H-elongata_contig119568.1506.1 ID=mRNA_H-elongata_contig119568.1506.1|Name=mRNA_H-elongata_contig119568.1506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig119568:492..1254- (Himanthalia elongata Himel1 dioecious)back to top |