mRNA_H-elongata_contig119568.1506.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119568.1506.1
Unique NamemRNA_H-elongata_contig119568.1506.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.680e-33
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            RLDVLVYADMNSEPISHFLG+SRLARVQAVFWGNPITTGNPSIDYFVS EV+E ++RT L D DEPYSEQ L
Sbjct:  544 RLDVLVYADMNSEPISHFLGYSRLARVQAVFWGNPITTGNPSIDYFVSTEVMEGQHRTALSDKDEPYSEQSL 615          
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: D7FK41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK41_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 9.000e-23
Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            +LDVL++AD   EP+SHFL   R+A +QA FWG PITTG+P+IDYF+SA+V+E  +RT +   D+PYSEQV+
Sbjct:   55 KLDVLIFADTTCEPVSHFLALGRVAPIQAAFWGTPITTGSPNIDYFLSADVMEHPDRTTMLPDDDPYSEQVV 126          
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A6H5L3P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P9_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.140e-22
Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            +LDVL++AD   EP+SHFL   R+A +QA FWG PITTG+P+IDYF+SA+ +E  +RT +   D+PYSEQV+
Sbjct:   60 KLDVLIFADTTCEPVSHFLALGRVAPIQAAFWGTPITTGSPNIDYFLSADAMEHPDRTTMLPDDDPYSEQVV 131          
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A7S1UEU8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEU8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.550e-22
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    7 DVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            DVLV+AD+NSEP+SHF+ +SR+A +Q VFWGNP+T+GNPSIDYFVSA+ +E   RT +    +PYSEQV+
Sbjct:   67 DVLVFADLNSEPMSHFMAYSRIAPLQMVFWGNPLTSGNPSIDYFVSADRMEFAKRTRVSPDLDPYSEQVV 136          
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A7S3K5W7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5W7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.200e-20
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNP-SIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            RLDVL+YADM SEP+++FLGF+RLA +Q +FWGNP+T+G    IDY++SA+++E   RT L  S EPYSEQ++
Sbjct:  527 RLDVLIYADMLSEPMTYFLGFARLAPIQMLFWGNPVTSGRGMEIDYYISADIMEAPERTKLPPSLEPYSEQLV 599          
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A6S8RMR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RMR4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.200e-19
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            +LDVLV+ADM SEP+S+FLGFSR A VQ  FWGNP+TTG  SIDYFVSA+ +E   RT+  D    +SEQV+
Sbjct:  583 KLDVLVFADMLSEPMSYFLGFSRFAPVQVCFWGNPLTTGRSSIDYFVSADRMEHPYRTLAGDE---WSEQVV 651          
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A7S3ZLD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLD0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.230e-19
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            +LDVLV+ADM SEP+S+FLGFSR A VQ  FWGNP+TTG  SIDYFVSA+ +E   RT+  D    +SEQV+
Sbjct:  583 KLDVLVFADMLSEPMSYFLGFSRFAPVQVCFWGNPLTTGRSSIDYFVSADRMEHPYRTLAGDE---WSEQVV 651          
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A067CWJ1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CWJ1_SAPPC)

HSP 1 Score: 82.4 bits (202), Expect = 1.050e-16
Identity = 38/71 (53.52%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    4 LDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            LDVLV+AD+ S+P+++F  F RLARVQA+FWGNP T+GN +IDYFVS+E+L+        +  + Y+EQV+
Sbjct:  508 LDVLVFADIMSDPVNYFTAFGRLARVQALFWGNPTTSGNAAIDYFVSSELLDAAMDPEETEDGDHYTEQVV 578          
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A485KTM2_9STRA (Aste57867_11675 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTM2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.050e-16
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            +LDVLV+AD+ SEPI+++  F+RLA VQA FWGNP T+G PSIDYF+SA+ +E     M+   +  YSEQV+
Sbjct:  531 QLDVLVFADIMSEPINYYAAFARLAHVQAAFWGNPTTSGIPSIDYFISADAMESSPDPMI---EVHYSEQVV 599          
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Match: A0A024UQX4_9STRA (Protein O-GlcNAc transferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQX4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.660e-16
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 RLDVLVYADMNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTMLFDSDEPYSEQVL 216
            +LDVLV+AD+ SEP+++F  F RLA VQA FWGNP T+G P++DYF+SA+V+E      +   D  YSEQV+
Sbjct:  512 QLDVLVFADLMSEPMTYFSAFGRLAHVQAAFWGNPTTSGIPTVDYFISADVMESSPDPAV---DAHYSEQVV 580          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119568.1506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUH1_ECTSI4.680e-3386.11Putative methyltransferase n=1 Tax=Ectocarpus sili... [more]
D7FK41_ECTSI9.000e-2358.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3P9_9PHAE3.140e-2256.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UEU8_9STRA5.550e-2262.86Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3K5W7_9STRA3.200e-2058.90Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6S8RMR4_9STRA7.200e-1962.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZLD0_9STRA7.230e-1962.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A067CWJ1_SAPPC1.050e-1653.52Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A485KTM2_9STRA1.050e-1655.56Aste57867_11675 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UQX4_9STRA2.660e-1654.17Protein O-GlcNAc transferase n=1 Tax=Aphanomyces i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119568contigH-elongata_contig119568:492..1254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.3e-23
Seed eggNOG ortholog2880.D7FUH1
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119568.1506.1prot_H-elongata_contig119568.1506.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119568 492..1227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.6320496-CDS-H-elongata_contig119568:491..5921622929699.6320496-CDS-H-elongata_contig119568:491..592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119568 492..592 -
1691679123.7480597-CDS-H-elongata_contig119568:491..5921691679123.7480597-CDS-H-elongata_contig119568:491..592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119568 492..592 -
1622929699.6430557-CDS-H-elongata_contig119568:1139..12271622929699.6430557-CDS-H-elongata_contig119568:1139..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119568 1140..1227 -
1691679123.7573106-CDS-H-elongata_contig119568:1139..12271691679123.7573106-CDS-H-elongata_contig119568:1139..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119568 1140..1227 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.6532571-UTR-H-elongata_contig119568:1227..12541622929699.6532571-UTR-H-elongata_contig119568:1227..1254Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119568 1228..1254 -
1691679123.7688925-UTR-H-elongata_contig119568:1227..12541691679123.7688925-UTR-H-elongata_contig119568:1227..1254Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119568 1228..1254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119568.1506.1

>prot_H-elongata_contig119568.1506.1 ID=prot_H-elongata_contig119568.1506.1|Name=mRNA_H-elongata_contig119568.1506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MNSEPISHFLGFSRLARVQAVFWGNPITTGNPSIDYFVSAEVLEPKNRTM
LFDSDEPYSEQVL
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mRNA from alignment at H-elongata_contig119568:492..1254-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119568.1506.1 ID=mRNA_H-elongata_contig119568.1506.1|Name=mRNA_H-elongata_contig119568.1506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=763bp|location=Sequence derived from alignment at H-elongata_contig119568:492..1254- (Himanthalia elongata Himel1 dioecious)
AGGCTCGACGTCCTTGTGTACGCCGACATGAATTCAGAGCCCATCTCCCA CTTCCTGGGGTTCTCACGACTGGCTAGAGTGCAGGCGGTATTTTGGGGCA ACCCGATCACCACAGGTACGAGGCGCGCAAACAAAAAGCGACGAAGCAAC TTATTTATAGTAACTTTCCCAACTTTTGATCTCTACGAAAACCTCCGGGG TGTGTCGTCGCTCTATTTATCATAATAGTGGGCAGCCTTGATGGCTTATT TCAAGCTGCCCAGACATTCTTGTCATTGGAAAGATTACTCTCTCTCTGTG TAGGCGCATGCATGTGACTCTACCAAAGGTTACTGTTTGGTGATTCAGTA ATCGTTAATGTCATAGAGTTATATCATAAGAGTTTTTTTTTTTTTTTTTT TTTTTTTTATTTTTTTTTTCTTAGATCTTCTTCCCCTCCAAGGTATCACC TAACTTCCCGCCGACTNNNNNNNNNNTTTTATTTTTTTTTGTTTGGTGTT TGATTATTTGTTAATGTCATAGAGTTATATCATAAGAGTTTTTTTTTTTT TTTTTTCCGAATCGTTAATGCCATAGAGCTGCTTCCCCTCCAAGGTATCA CCGAACTTCCCGCCGACTACTGTAAAAAGCCGCTATCCGATTGACTTGGG TCGTGCCCGCAGGCAACCCTTCAATCGACTATTTTGTCTCGGCGGAAGTA TTGGAGCCGAAGAACCGCACGATGCTCTTCGACAGCGACGAACCCTACTC CGAGCAGGTGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig119568:492..1254-

>mRNA_H-elongata_contig119568.1506.1 ID=mRNA_H-elongata_contig119568.1506.1|Name=mRNA_H-elongata_contig119568.1506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig119568:492..1254- (Himanthalia elongata Himel1 dioecious)
ATGAATTCAGAGCCCATCTCCCACTTCCTGGGGTTCTCACGACTGGCTAG
AGTGCAGGCGGTATTTTGGGGCAACCCGATCACCACAGATGAATTCAGAG
CCCATCTCCCACTTCCTGGGGTTCTCACGACTGGCTAGAGTGCAGGCGGT
ATTTTGGGGCAACCCGATCACCACAGGCAACCCTTCAATCGACTATTTTG
TCTCGGCGGAAGTATTGGAGCCGAAGAACCGCACGATGCTCTTCGACAGC
GACGAACCCTACTCCGAGCAGGTGCTGGCAACCCTTCAATCGACTATTTT
GTCTCGGCGGAAGTATTGGAGCCGAAGAACCGCACGATGCTCTTCGACAG
CGACGAACCCTACTCCGAGCAGGTGCTG
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