mRNA_H-elongata_contig119506.1503.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119506.1503.1
Unique NamemRNA_H-elongata_contig119506.1503.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: A0A6H5KVK0_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.280e-25
Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 MYNGHKRCHAFKFQETVKPDGVIVSLYGPVED---------RSGLGQLMQEHMNIDGQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
             YNGHKR HA KFQ  + PDG+ V L+GPV           +SGL + +    +  G  Y +YGDPAYGLS H+  P++A++   LT +M +FNKRMS CRV+VE
Sbjct:   11 FYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVE 115          
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.280e-24
Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 MYNGHKRCHAFKFQETVKPDGVIVSLYGPVED---------RSGLGQLMQEHMNIDGQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
             YNGHKR HA KFQ  + PDG+ V L+GPV           + GL + +    +  G  Y +YGDPAYGLS H+  P++A++A  LT +M +FNKRMS CRV+VE
Sbjct:   60 FYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHHSFILAQFGLMEKLSMQNSPIGHPYYLYGDPAYGLSNHLVCPFSASSAGPLTPEMADFNKRMSHCRVTVE 164          
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.120e-23
Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 MYNGHKRCHAFKFQETVKPDGVIVSLYGPVED---------RSGLGQLMQEHMNIDGQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
             YNGHKR HA KFQ  + PDG+ V L+GPV           +SGL + +    +  G  Y +YGDPAYGLS H+  P++A++   LT +M +FNKRMS CRV+VE
Sbjct:  160 FYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVE 264          
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.590e-23
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    4 YNGHKRCHAFKFQETVKPDGVIVSLYGPVED---------RSGLGQLMQEHMNI-DGQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
            YNGHKR HA KFQ  + PDG+ V ++GPV           +SGL Q +  H N   G  Y +YGDPAYGLS H+  P++A++   LT  M +FN+RMS CRV+VE
Sbjct:  180 YNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTRHDSYLLAQSGLMQKLATHSNSPSGHPYCLYGDPAYGLSDHLACPFSASSHGPLTPDMADFNQRMSHCRVAVE 284          
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: A0A6H5KLS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.960e-22
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 MYNGHKRCHAFKFQETVKPDGVIVSLYGPVED---------RSGLGQLMQEHMNIDGQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
             YN HK  HAFKFQ  V PDG+   L+GPV           +SGL Q +    +  GQ Y +YGDPAYGLS H+  P++A++   LT ++ +FNKR+S+CRV+VE
Sbjct:  527 FYNDHKGKHAFKFQGVVTPDGLFADLWGPVVGTRHDNYILAQSGLMQKLAMLNSPSGQPYYLYGDPAYGLSNHLICPFSASSVGPLTPEVADFNKRISACRVTVE 631          
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: A0A6H5K0J0_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J0_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 7.320e-22
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 MYNGHKRCHAFKFQETVKPDGVIVSLYGPVED---------RSGLGQLMQEHMNIDGQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
             YNGHKR HA KFQ  + PDG+ V L+GPV           +SGL + +    +  G  Y +YGDPAYGL  H+  P++A++    T +M +FNKR S CRV+VE
Sbjct:   90 FYNGHKRKHAMKFQGIITPDGLFVDLWGPVAGTRHDSFMLAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLRNHLVCPFSASSVGPFTPEMADFNKRTSHCRVTVE 194          
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: A0A7D9JJC4_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JJC4_PARCT)

HSP 1 Score: 92.0 bits (227), Expect = 2.100e-21
Identity = 52/106 (49.06%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 MYNGHKRCHAFKFQETVKPDGVIVSLYGPVEDR---------SGL-GQLMQEHMNIDGQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
            +YNGHK  HA KFQ    P+G+I +LYGPVE R         SGL G L     N DGQ   +YGDPAY L   +  PY   +   LT  M EFN+ MSS RVSVE
Sbjct:    5 VYNGHKHVHALKFQSVALPNGLIANLYGPVEGRRHDAGMLKDSGLLGSLELHAHNPDGQLLCLYGDPAYPLCPQLMAPYRVGDVQVLTEDMKEFNRAMSSLRVSVE 110          
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: A0A6S7JPM4_PARCT (DDE Tnp4 domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JPM4_PARCT)

HSP 1 Score: 94.0 bits (232), Expect = 9.320e-21
Identity = 53/106 (50.00%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    1 MYNGHKRCHAFKFQETVKPDGVIVSLYGPVEDR---------SGL-GQLMQEHMNIDGQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
            +YNGHKR HA KFQ    P+G+I +LYGPVE R         SGL G L     N DGQ   +YGDPAY L   +  PY   +   LT  M EFN+ MSS RVSVE
Sbjct:  191 VYNGHKRVHALKFQSVALPNGLIANLYGPVEGRRHDAGMLKDSGLLGSLELHAHNPDGQLLCLYGDPAYPLRPQLMAPYRVGDVQVLTEDMKEFNRAMSSLRVSVE 296          
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: A0A6G0XLE7_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLE7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.560e-20
Identity = 48/104 (46.15%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    4 YNGHKRCHAFKFQETVKPDGVIVSLYGPVEDR---------SGLGQLMQEHMNIDGQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
            YNGHKR HA KFQ    PDG+I+ L GP   R         S L + + +HM +    + +YGDPAYGL  HI +P+   N   LT     FNKRMS  RVSVE
Sbjct:   97 YNGHKRVHALKFQSVSAPDGMIIHLSGPYVGRRHDTRMLRESKLSEALSKHMRLGDSTFVIYGDPAYGLENHIISPFRGAN---LTKPQELFNKRMSRVRVSVE 197          
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Match: A0A7D9LRU2_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LRU2_PARCT)

HSP 1 Score: 91.3 bits (225), Expect = 5.370e-20
Identity = 50/106 (47.17%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 MYNGHKRCHAFKFQETVKPDGVIVSLYGPVEDR---------SGLGQLMQEHMNID-GQAYQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE 288
            MYNGHKR HA KFQ  V P+G+I +LYGP+E +         SGL   + +H N   G    +YGDPAY L +H+  PY   N   L  +  EFN+ MSS RVSVE
Sbjct:  146 MYNGHKRIHAIKFQSVVAPNGLIANLYGPIEGKRHDAGMLRMSGLLDQLDQHCNTPLGDPLCIYGDPAYPLRRHLQKPYQHPN---LDERQLEFNRSMSSVRVSVE 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119506.1503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK0_9PHAE7.280e-2547.62DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KY46_9PHAE1.280e-2447.62DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KB08_9PHAE1.120e-2347.62DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D8LL85_ECTSI5.590e-2348.57DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5KLS3_9PHAE5.960e-2246.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J0_9PHAE7.320e-2244.76DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A7D9JJC4_PARCT2.100e-2149.06DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]
A0A6S7JPM4_PARCT9.320e-2150.00DDE Tnp4 domain-containing protein n=3 Tax=Paramur... [more]
A0A6G0XLE7_9STRA1.560e-2046.15DDE Tnp4 domain-containing protein n=1 Tax=Aphanom... [more]
A0A7D9LRU2_PARCT5.370e-2047.17DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119506contigH-elongata_contig119506:600..890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue4.5e-19
Seed eggNOG ortholog2880.D7G2E5
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.3501928-CDS-H-elongata_contig119506:599..8901622929699.3501928-CDS-H-elongata_contig119506:599..890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119506 600..890 -
1691679123.6190047-CDS-H-elongata_contig119506:599..8901691679123.6190047-CDS-H-elongata_contig119506:599..890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119506 600..890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119506.1503.1prot_H-elongata_contig119506.1503.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119506 600..890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119506.1503.1

>prot_H-elongata_contig119506.1503.1 ID=prot_H-elongata_contig119506.1503.1|Name=mRNA_H-elongata_contig119506.1503.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MYNGHKRCHAFKFQETVKPDGVIVSLYGPVEDRSGLGQLMQEHMNIDGQA
YQVYGDPAYGLSQHIFTPYNATNAVDLTLQMCEFNKRMSSCRVSVE*
back to top

mRNA from alignment at H-elongata_contig119506:600..890-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119506.1503.1 ID=mRNA_H-elongata_contig119506.1503.1|Name=mRNA_H-elongata_contig119506.1503.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig119506:600..890- (Himanthalia elongata Himel1 dioecious)
ATGTATAACGGTCACAAGAGATGCCATGCCTTCAAGTTTCAAGAAACTGT AAAACCGGATGGTGTGATTGTTAGTCTGTATGGACCCGTCGAAGACCGTT CAGGACTAGGACAGCTCATGCAGGAGCATATGAATATTGATGGCCAGGCA TACCAAGTGTACGGAGATCCGGCATATGGGTTGAGCCAACATATATTCAC GCCATACAACGCAACTAATGCTGTCGATCTCACTCTTCAAATGTGTGAGT TCAATAAGAGGATGAGTTCCTGTCGAGTATCCGTCGAGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig119506:600..890-

>mRNA_H-elongata_contig119506.1503.1 ID=mRNA_H-elongata_contig119506.1503.1|Name=mRNA_H-elongata_contig119506.1503.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig119506:600..890- (Himanthalia elongata Himel1 dioecious)
ATGTATAACGGTCACAAGAGATGCCATGCCTTCAAGTTTCAAGAAACTGT
AAAACCGGATGGTGTGATTGTTAGTCTGTATGGACCCGTCGAAGACCGTT
CAGGACTAGGACAGCTCATGCAGGAGCATATGAATATTGATGGCCAGGCA
TACCAAGTGTACGGAGATCCGGCATATGGGTTGAGCCAACATATATTCAC
GCCATACAACGCAACTAATGCTGTCGATCTCACTCTTCAAATGTGTGAGT
TCAATAAGAGGATGAGTTCCTGTCGAGTATCCGTCGAGTAGATGTATAAC
GGTCACAAGAGATGCCATGCCTTCAAGTTTCAAGAAACTGTAAAACCGGA
TGGTGTGATTGTTAGTCTGTATGGACCCGTCGAAGACCGTTCAGGACTAG
GACAGCTCATGCAGGAGCATATGAATATTGATGGCCAGGCATACCAAGTG
TACGGAGATCCGGCATATGGGTTGAGCCAACATATATTCACGCCATACAA
CGCAACTAATGCTGTCGATCTCACTCTTCAAATGTGTGAGTTCAATAAGA
GGATGAGTTCCTGTCGAGTATCCGTCGAGTAG
back to top