mRNA_H-elongata_contig119491.1502.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119491.1502.1
Unique NamemRNA_H-elongata_contig119491.1502.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.380e-25
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
            VKWLA+VMS L+   RRQFL+FVTGTPRLPIGGF ALRPRLTVVKKEV    G TPD+HLPSCSTC
Sbjct: 2260 VKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTC 2325          
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: D7G4E7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.600e-23
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1
Query:   22 MSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
            MS L+   RRQFL+FVTGTPRLPIGGF ALRPRLTVVKKEV    G TPD+HLPSCSTC
Sbjct:    1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTC 59          
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A835Z7D6_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.930e-17
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   10 LAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
            L +V+S L+ A+RR FL FVTG+PRLP+GGFAAL+PRLTVV+K+        PD HLPSCSTC
Sbjct:  248 LVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRKDTPR-----PDEHLPSCSTC 305          
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A0L0HCH4_SPIPD (HECT-type E3 ubiquitin transferase n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HCH4_SPIPD)

HSP 1 Score: 79.0 bits (193), Expect = 1.360e-15
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
            +K LA  MS LNP +RR+FLQFVTG+P+LP+GGF AL P LTVV+K V + +   PD +LPS  TC
Sbjct: 2269 IKHLATFMSTLNPIQRREFLQFVTGSPKLPLGGFKALNPSLTVVRKNVEAGK--KPDDYLPSVMTC 2332          
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A4P9ZF83_9ASCO (HECT-type E3 ubiquitin transferase n=1 Tax=Metschnikowia bicuspidata TaxID=27322 RepID=A0A4P9ZF83_9ASCO)

HSP 1 Score: 77.8 bits (190), Expect = 3.460e-15
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
            +K L  ++S  +   RRQFLQF+TG+PRLPIGGFAAL P+LT+VKK V S  G   D HLPS  TC
Sbjct: 1300 IKHLLSIISDFSKVERRQFLQFLTGSPRLPIGGFAALNPKLTIVKKHVDS--GQKTDDHLPSVMTC 1363          
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A183IQS5_9BILA (E3 ubiquitin-protein ligase n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IQS5_9BILA)

HSP 1 Score: 77.4 bits (189), Expect = 4.630e-15
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPS 186
            + WLAK+M+G +  +RRQFLQFVTG+PRLP+GG   L P LTVV+K + S    +PD+HLPS
Sbjct:  449 IMWLAKIMNGFDDEQRRQFLQFVTGSPRLPVGGLKNLSPPLTVVRKYIFSG---SPDSHLPS 507          
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A1X7VUP3_AMPQE (E3 ubiquitin-protein ligase n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VUP3_AMPQE)

HSP 1 Score: 77.4 bits (189), Expect = 4.740e-15
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
            +++L +V+S  +   +RQF+QFVTG+PRLP+GGF AL P+LT+V+K VGSS+  +PD  LPS  TC
Sbjct: 1865 IQFLFRVLSSYSTTEQRQFIQFVTGSPRLPVGGFKALNPQLTIVRKAVGSSQ--SPDNFLPSVMTC 1928          
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A7S1CCF7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.850e-15
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
            V+ L +V+S L+P  RRQFL F TG+PRLP+GGF AL PRLT+V+K+    R  +PDA LPS STC
Sbjct: 2026 VQMLVEVLSDLDPVLRRQFLLFTTGSPRLPVGGFNALLPRLTIVQKKPLPGR--SPDASLPSASTC 2089          
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: UPI0018DA2F90 (E3 ubiquitin-protein ligase TRIP12-like isoform X1 n=5 Tax=Patiria miniata TaxID=46514 RepID=UPI0018DA2F90)

HSP 1 Score: 75.9 bits (185), Expect = 1.650e-14
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
            VK+L ++M+  NP ++RQFLQFVTG+PRLP+GGF AL P LT+V+K   +S    PD  LPS  TC
Sbjct: 2227 VKFLFEIMASYNPQQQRQFLQFVTGSPRLPVGGFKALTPPLTIVRKTFETSEN--PDNFLPSVMTC 2290          
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A1D1UBX1_RAMVA (E3 ubiquitin-protein ligase n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UBX1_RAMVA)

HSP 1 Score: 75.5 bits (184), Expect = 2.260e-14
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
            ++WL  ++S  N   RR F+QFVTG+P+LP+GGF AL P  TVVKK VG S+   PD  LPS  TC
Sbjct: 1886 IQWLFSILSKYNAEERRNFVQFVTGSPKLPVGGFKALNPPFTVVKKVVGESQ--KPDQFLPSVMTC 1949          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2P5_9PHAE3.380e-2578.79HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4E7_ECTSI1.600e-2377.97HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z7D6_9STRA7.930e-1763.49HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A0L0HCH4_SPIPD1.360e-1559.09HECT-type E3 ubiquitin transferase n=2 Tax=Spizell... [more]
A0A4P9ZF83_9ASCO3.460e-1559.09HECT-type E3 ubiquitin transferase n=1 Tax=Metschn... [more]
A0A183IQS5_9BILA4.630e-1558.06E3 ubiquitin-protein ligase n=1 Tax=Soboliphyme ba... [more]
A0A1X7VUP3_AMPQE4.740e-1554.55E3 ubiquitin-protein ligase n=2 Tax=Amphimedon que... [more]
A0A7S1CCF7_9STRA8.850e-1559.09HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
UPI0018DA2F901.650e-1456.06E3 ubiquitin-protein ligase TRIP12-like isoform X1... [more]
A0A1D1UBX1_RAMVA2.260e-1454.55E3 ubiquitin-protein ligase n=1 Tax=Ramazzottius v... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119491contigH-elongata_contig119491:1100..1297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog2880.D7G4E7
KEGG koko:K03874,ko:K10590
KEGG Pathwayko04120,map04120
EggNOG free text desc.negative regulation of histone ubiquitination
EggNOG OGsCOG5021@1,KOG0170@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHECT
Ec32 orthologEc-13_002660.1
Exons1
Model size198
Cds size177
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.2909057-UTR-H-elongata_contig119491:1099..11201622929699.2909057-UTR-H-elongata_contig119491:1099..1120Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119491 1100..1120 +
1691679123.6009557-UTR-H-elongata_contig119491:1099..11201691679123.6009557-UTR-H-elongata_contig119491:1099..1120Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119491 1100..1120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.306674-CDS-H-elongata_contig119491:1120..12971622929699.306674-CDS-H-elongata_contig119491:1120..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119491 1121..1297 +
1691679123.6109152-CDS-H-elongata_contig119491:1120..12971691679123.6109152-CDS-H-elongata_contig119491:1120..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119491 1121..1297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119491.1502.1prot_H-elongata_contig119491.1502.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119491 1121..1297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119491.1502.1

>prot_H-elongata_contig119491.1502.1 ID=prot_H-elongata_contig119491.1502.1|Name=mRNA_H-elongata_contig119491.1502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPD
AHLPSCSTC
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mRNA from alignment at H-elongata_contig119491:1100..1297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119491.1502.1 ID=mRNA_H-elongata_contig119491.1502.1|Name=mRNA_H-elongata_contig119491.1502.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig119491:1100..1297+ (Himanthalia elongata Himel1 dioecious)
GTAAAATGGCTGGCAAAGGTCATGTCGGGTCTCAACCCCGCCCGTCGTCG CCAGTTCCTCCAGTTCGTGACTGGAACTCCCCGGCTACCCATCGGGGGCT TTGCCGCCCTCCGTCCCCGTCTGACGGTGGTGAAGAAAGAAGTCGGAAGT TCTCGAGGCTGCACTCCTGATGCCCACCTTCCCAGCTGCTCGACGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig119491:1100..1297+

>mRNA_H-elongata_contig119491.1502.1 ID=mRNA_H-elongata_contig119491.1502.1|Name=mRNA_H-elongata_contig119491.1502.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig119491:1100..1297+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGGTCTCAACCCCGCCCGTCGTCGCCAGTTCCTCCAGTTCGTGAC
TGGAACTCCCCGGCTACCCATCGGGGGCTTTGCCGCCCTCCGTCCCCGTC
TGACGGTGGTGAAGAAAGAAGTCGGAAGTTCTCGAGGCTGCACTCCTGAT
GCCCACCTTCCCAGCTGCTCGACGTGCATGTCGGGTCTCAACCCCGCCCG
TCGTCGCCAGTTCCTCCAGTTCGTGACTGGAACTCCCCGGCTACCCATCG
GGGGCTTTGCCGCCCTCCGTCCCCGTCTGACGGTGGTGAAGAAAGAAGTC
GGAAGTTCTCGAGGCTGCACTCCTGATGCCCACCTTCCCAGCTGCTCGAC
GTGC
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