mRNA_H-elongata_contig119461.1498.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: D7FTR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTR9_ECTSI) HSP 1 Score: 140 bits (352), Expect = 8.580e-38 Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 1
Query: 1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKAL 255
L DP LAGCLFLC+PRTSARMRLVIPV M ALVP+ LLP MRHLWLQAGTGNANFYYFQT+ LN+L +VFVLQFAAAL KRRKAL
Sbjct: 340 LVDPMLAGCLFLCHPRTSARMRLVIPVGMAALVPALLLPTMRHLWLQAGTGNANFYYFQTVGLNVLLAVFVLQFAAALVKRRKAL 424
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A836CN19_9STRA (GPI transamidase subunit PIG-U n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN19_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.500e-11 Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKAL 255
L P L CL L + T AR+R + ++ P LLP++ WL+AGTGNAN+ YFQ + N +V VLQF AA +RRKAL
Sbjct: 356 LGAPCLVACLMLPHACTLARVRGGAALVVLGGAPLALLPVVARAWLRAGTGNANYLYFQALAANAAAAVGVLQFVAATVRRRKAL 440
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A2R5GJN2_9STRA (Phosphatidylinositol glycan anchor biosynthesis class U protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJN2_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.060e-9 Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 1
Query: 28 LFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKALA 258
LF +P T RM V+P+ + L S +LP+MRH+WL G+GNAN+YYFQT++ + + F A R + LA
Sbjct: 414 LFAMHPLTVKRMPYVLPLAIGVLSTSIMLPVMRHMWLTVGSGNANYYYFQTLICQFCATSLFVHFVRATLVRDRVLA 490
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: W4K5N2_HETIT (Uncharacterized protein n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4K5N2_HETIT) HSP 1 Score: 54.7 bits (130), Expect = 1.000e-6 Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 1
Query: 1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNL 195
L+DP L L +P T A R I ++ L S LLP+ HLW+ AGTGNANF+Y T+V +
Sbjct: 310 LSDPGLFISLISLFPETYAYFRHPIVTTLLHLHASLLLPLFHHLWVAAGTGNANFFYASTLVFGI 374
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: S7RV59_GLOTA (PIG-U-domain-containing protein n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7RV59_GLOTA) HSP 1 Score: 50.8 bits (120), Expect = 2.290e-5 Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 1
Query: 1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNL 195
LADP L ++ +P + +P ++ L S LLP+ LWL GTGNANF+Y T+VL +
Sbjct: 321 LADPGLFLSMYSVFPEIFPYLSHPLPTTLLHLHASLLLPLFHSLWLNQGTGNANFFYASTLVLGM 385
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A1Z5K124_FISSO (Phosphatidylinositol glycan, class U n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K124_FISSO) HSP 1 Score: 50.8 bits (120), Expect = 2.310e-5 Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 19 AGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRH-----LWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKAL 255
A CL L ++ AR+R VIP + V SF +P+ + LWL G+G ANF +FQ +V N ++ +QF AA +R KAL
Sbjct: 375 AFCLLLLSSKSLARLR-VIPSLIA--VSSFSIPVALYVVNTWLWLDTGSGEANFMFFQCLVYNAFVAIIFVQFVAACLRRDKAL 455
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A2S5BHU3_9BASI (Uncharacterized protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BHU3_9BASI) HSP 1 Score: 50.4 bits (119), Expect = 3.130e-5 Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 16 LAGCLFLCYPRTSARM-RLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKR 243
L GC P S+ + ++P++ V L+P+F HLWL AGTGNANF+Y T+V + + ++ A GKR
Sbjct: 330 LLGCFSEYLPYVSSPLFNTLLPLYAVLLLPAF-----HHLWLSAGTGNANFFYAATLVWAISMGGWAIEAVKAYGKR 401
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A0D2NTY4_HYPSF (Uncharacterized protein n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2NTY4_HYPSF) HSP 1 Score: 50.1 bits (118), Expect = 4.280e-5 Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIV 186
L+DP L + +P + +R I ++ L S L+P+ HLWL GTGNANF+Y T+V
Sbjct: 328 LSDPGLFLSMIAVFPEIHSYLRYPIVTALLHLHASLLMPLFDHLWLNQGTGNANFFYASTLV 389
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A024U9F7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9F7_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 4.290e-5 Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1
Query: 97 VPSFLLPIMRHLWLQAGTGNANFYYFQTIVLNLLWSVFVLQFAAALGKRRKAL 255
V S L+P+M LWL G+GNANF+Y QTIV + V QF AA +R K L
Sbjct: 376 VASVLMPVMGFLWLYPGSGNANFFYNQTIVFQFFYLRVVGQFLAATMRRDKQL 428
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Match: A0A8H5FWN1_9AGAR (Uncharacterized protein n=1 Tax=Leucoagaricus leucothites TaxID=201217 RepID=A0A8H5FWN1_9AGAR) HSP 1 Score: 49.3 bits (116), Expect = 7.980e-5 Identity = 24/62 (38.71%), Postives = 35/62 (56.45%), Query Frame = 1
Query: 1 LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTGNANFYYFQTIV 186
L+DP L + +P +R I ++ L + L+P+ HLWL GTGNANF+Y T+V
Sbjct: 319 LSDPGLFFSVLSIFPEVHPYLRHPIVTALIHLHAALLMPLFNHLWLNTGTGNANFFYASTLV 380 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119461.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119461.1498.1 >prot_H-elongata_contig119461.1498.1 ID=prot_H-elongata_contig119461.1498.1|Name=mRNA_H-elongata_contig119461.1498.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp LADPFLAGCLFLCYPRTSARMRLVIPVFMVALVPSFLLPIMRHLWLQAGTback to top mRNA from alignment at H-elongata_contig119461:1761..2018- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119461.1498.1 ID=mRNA_H-elongata_contig119461.1498.1|Name=mRNA_H-elongata_contig119461.1498.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig119461:1761..2018- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119461:1761..2018- >mRNA_H-elongata_contig119461.1498.1 ID=mRNA_H-elongata_contig119461.1498.1|Name=mRNA_H-elongata_contig119461.1498.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig119461:1761..2018- (Himanthalia elongata Himel1 dioecious)back to top |