mRNA_H-elongata_contig119393.1492.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119393.1492.1
Unique NamemRNA_H-elongata_contig119393.1492.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: D7G7J8_ECTSI (Nucleolar complex associated 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7J8_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.840e-47
Identity = 86/102 (84.31%), Postives = 93/102 (91.18%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRARAPPPTEAGKTSLRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQV 306
            VRLLAYLRVRQMA  LPFPF+E CM+ LYLAFAKRARAPP +++GK SLRVMEGCVVELYGMD  SAYQNAFLYIRQLSLLLRRAMQ ++KDSVQAVRRWQV
Sbjct:  511 VRLLAYLRVRQMAAALPFPFVEGCMKRLYLAFAKRARAPPASQSGKVSLRVMEGCVVELYGMDVGSAYQNAFLYIRQLSLLLRRAMQHRTKDSVQAVRRWQV 612          
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: B7FQ14_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ14_PHATC)

HSP 1 Score: 101 bits (251), Expect = 8.320e-23
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRARAPPPTEA--GKTSLRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQ 303
            VRL A+ R+RQ+A   PFPF+E+C++ +YLA+A+RA+    + A     +L  M  C+VELY +D  S+YQ+AF+YIRQL+LLLR AMQ+K+K+S Q V  WQ
Sbjct:  386 VRLNAFFRIRQLALTQPFPFVETCLKKIYLAYARRAKLGVSSSATTAMPTLTFMGNCLVELYSLDYHSSYQHAFVYIRQLALLLRAAMQKKTKESFQQVFCWQ 488          
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: A0A7S1D2V9_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2V9_CYCTE)

HSP 1 Score: 98.2 bits (243), Expect = 2.440e-22
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRARAPPPTEAGKTS----LRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQ 303
            VRL A+LR+RQMA   PFPF+E C++  YLA+AKRA+    T A  TS    L  M  CVVELY +D  S+YQ+AF+YIRQL+L LR AMQ+K+ ++ Q V  WQ
Sbjct:  204 VRLNAFLRIRQMAVTQPFPFIEDCLKKTYLAYAKRAKFG--TSATATSVLPTLTFMGNCVVELYTLDYHSSYQHAFVYIRQLALHLRSAMQKKTPEAFQVVYCWQ 306          
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: A0A1E7FSB6_9STRA (Noc2-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSB6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 9.990e-22
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRAR---APPPTEAGKTSLRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQ 303
            VRL A+LR+RQ+A   PFPF+E C++ LYLA+A+RA+   A   T A  T L  M  CVVELY +D  S+YQ+AF+YIRQL+L LR AMQ+K+ +++ AV  WQ
Sbjct:  359 VRLHAFLRIRQLAMTQPFPFIEECLKKLYLAYAQRAKFATASSVTSALPT-LTFMGNCVVELYSLDYHSSYQHAFIYIRQLALHLRTAMQRKTPEAMGAVYCWQ 461          
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: A0A7S2S7C6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S7C6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.000e-21
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRAR---APPPTEAGKTSLRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQ 303
            VRL A+LR+RQ+A   PFPF+E C++  YLA+AKRA+   A   T    T L  M  CVVELY +D AS+YQ+AF+YIRQL+L LR A+Q+K+ DS + V  WQ
Sbjct:  396 VRLNAFLRIRQLAVTQPFPFIEQCLKSSYLAYAKRAKFANAATVTTLLPT-LTFMGNCVVELYSLDFASSYQHAFVYIRQLALHLRTALQKKTPDSFRVVYCWQ 498          
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: W7T2Z2_9STRA (Uncharacterized protein family UPF0120 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Z2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.010e-21
Identity = 51/101 (50.50%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRARAPPPTEAGKTSLRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQ 303
            V+L+A+LRVRQ A  LPFPF+E C++G YL++A+ A+    +EA    L +M   +VELYG+D ASAYQ+AF+Y+RQL+L LR A  +K+ +++Q V+ WQ
Sbjct:  417 VKLVAFLRVRQAATVLPFPFLEHCLKGAYLSYARNAKFV--SEASLPGLTLMGNGLVELYGLDLASAYQHAFVYVRQLALHLRAAYTKKTPEALQKVQCWQ 515          
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: A0A448Z9V8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9V8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.370e-21
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRAR---APPPTEAGKTSLRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQ 303
            VRL A+LR+RQ+A   PFPF+E C++ LYLA+A+RA+   A   T A  T L  M  CVVELY +D  S+YQ+AF+YIRQL+L LR AMQ+K+ +++ A+  WQ
Sbjct:  420 VRLHAFLRIRQLAMTQPFPFIEECLKKLYLAYAQRAKFATASSVTSALPT-LTFMGNCVVELYSLDYHSSYQHAFIYIRQLALHLRTAMQKKTPEAMGAIYCWQ 522          
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: A0A1Z5J7C2_FISSO (Nucleolar complex protein 2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7C2_FISSO)

HSP 1 Score: 94.4 bits (233), Expect = 2.250e-20
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRARAPPPTEAGKT--SLRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQ 303
            VRL A+LR+RQ+A   PFPF+E  ++  YLA+AKRA+            +L  M  C+ ELY +D  S+YQ+AF+YIRQL+LLLR AM +K+K+++Q V  WQ
Sbjct:  401 VRLNAFLRIRQLALTQPFPFIEDILKKTYLAYAKRAKFGTGASVSSVLPTLTFMGNCLCELYSLDHHSSYQHAFVYIRQLALLLRTAMYKKTKEAMQQVYHWQ 503          
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: A0A7S4MG20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MG20_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.910e-20
Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRAR--APPPTEAGKTSLRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQ 303
            VRL ++LRVRQ+A   PFPF+E C++  YL +A+RA+        +   +L  M  CVVELY +D AS+Y++AF+YIRQL+L LR A+Q+++ +S++ V  WQ
Sbjct:  292 VRLRSFLRVRQLAVTQPFPFVEDCLKSSYLCYARRAKFGTAASVHSALPTLTFMGNCVVELYSLDYASSYRHAFVYIRQLALHLRTALQRRTPESLRVVYCWQ 394          
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Match: A0A7S2VGJ3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VGJ3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.070e-20
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRAR--APPPTEAGKTSLRVMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRWQ 303
            VRL A+ R+RQ+A+  PFPF+E+C+R  YLA+A+RA+     PT    ++L  M   VVELY +D  S+YQ+AF+YIRQL+L LR A+Q+ + +S+  + RWQ
Sbjct:  441 VRLNAFFRIRQLAKTQPFPFIETCLRKTYLAYARRAKHGKSAPTVEVLSTLTFMGNSVVELYSLDLHSSYQHAFVYIRQLALHLRAAIQKTTPESIAQLFRWQ 543          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119393.1492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7J8_ECTSI2.840e-4784.31Nucleolar complex associated 2 homolog n=2 Tax=Ect... [more]
B7FQ14_PHATC8.320e-2351.46Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1D2V9_CYCTE2.440e-2254.29Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A1E7FSB6_9STRA9.990e-2253.85Noc2-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S2S7C6_9STRA1.000e-2153.85Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
W7T2Z2_9STRA1.010e-2150.50Uncharacterized protein family UPF0120 n=2 Tax=Mon... [more]
A0A448Z9V8_9STRA1.370e-2152.88Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5J7C2_FISSO2.250e-2048.54Nucleolar complex protein 2 n=2 Tax=Fistulifera so... [more]
A0A7S4MG20_9STRA2.910e-2046.60Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2VGJ3_9STRA3.070e-2048.54Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119393contigH-elongata_contig119393:374..1470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.2e-40
Seed eggNOG ortholog2880.D7G7J8
KEGG koko:K14833
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0030691,GO:0031974,GO:0031981,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:1990904
EggNOG free text desc.domain, Protein
EggNOG OGsCOG5604@1,KOG2256@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionnucleolar complex associated 2 homolog
Ec32 orthologEc-22_002150.1
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.5581112-CDS-H-elongata_contig119393:373..5181622929698.5581112-CDS-H-elongata_contig119393:373..518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119393 374..518 -
1691679123.3232996-CDS-H-elongata_contig119393:373..5181691679123.3232996-CDS-H-elongata_contig119393:373..518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119393 374..518 -
1622929698.57588-CDS-H-elongata_contig119393:1309..14701622929698.57588-CDS-H-elongata_contig119393:1309..1470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119393 1310..1470 -
1691679123.3364537-CDS-H-elongata_contig119393:1309..14701691679123.3364537-CDS-H-elongata_contig119393:1309..1470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119393 1310..1470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119393.1492.1prot_H-elongata_contig119393.1492.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119393 374..1470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119393.1492.1

>prot_H-elongata_contig119393.1492.1 ID=prot_H-elongata_contig119393.1492.1|Name=mRNA_H-elongata_contig119393.1492.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
VRLLAYLRVRQMAEGLPFPFMESCMRGLYLAFAKRARAPPPTEAGKTSLR
VMEGCVVELYGMDGASAYQNAFLYIRQLSLLLRRAMQQKSKDSVQAVRRW
QV
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mRNA from alignment at H-elongata_contig119393:374..1470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119393.1492.1 ID=mRNA_H-elongata_contig119393.1492.1|Name=mRNA_H-elongata_contig119393.1492.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1097bp|location=Sequence derived from alignment at H-elongata_contig119393:374..1470- (Himanthalia elongata Himel1 dioecious)
GTTCGGCTGCTGGCCTACCTTCGGGTGCGCCAGATGGCCGAGGGGCTGCC TTTCCCCTTCATGGAGAGCTGCATGAGGGGGCTGTACCTCGCCTTCGCCA AGCGGGCCAGGGCGCCGCCGCCTACGGAGGCAGGCAAGACGTCGCTCAGG GTCATGGAAGGGTAAGAAAAGGAGGGACGAGGGGGCGCGCGCGCGCGCGC ACGGGGGCTATTTGGACCCAAATCTTCCTTTGATCGATTGATGTGCGAAG GAGGTACGCCACCCCACGCCTCTGTATATTTCCCTGTTATTCAGTATAAT AAGTAGGCTCTGCATATAGCGGAGAAGCTAAGAAGGAACCCTAAGGAAGT AAAATCTCCCCAAGTAAAGAGCTCGACCAGTAGTGTATCCAGTATAACCA GTGGTGTTGTTCATGAGAGGTACACAAGAGTACTGAACGTTACATCGCTA TATCGTTGTTATATCTAGGAGCGAAATGAGTATAGATAGTTATATCCCTC ATGATCACTGTCGAGATAGACGTCGTTTGGGATATGGGTGGGAAGGGGTG TAGGTGCAGGAAGCATATTGAAAGCACGCTGAATGATCCCCATCGGCACA GAGAGAGACAAATATGTCAAACAAGACGATAATTGGTCCCTCCCCTGGAC TGCACCTCTCACGGTGCTAATTTTTTAATGAATTAATATATATATATATA TATATATTATTTTTTAAGAAGAAATAACGCTACAGGGTAAGGTGGCTTAT TTTGGTGCTTTTTTTGTTTCGTGAACGGGAAAGGGGCACGCCGCGTATTT TGCTGGACGGGCGCTAACTCCTCAAAGCAAGAAACGGTGTACCTTGGACC TCACCGATCATATCAATTTTGTCCGTGCCTCTTAGGGTTAAGACTCTAGA CGCTGCAGATCCGAAGCGATGGCCTGACCTGTCGGTTTTCGTCTTATCCT AGGTGTGTGGTGGAGCTGTACGGCATGGACGGGGCATCGGCCTACCAAAA CGCCTTCCTGTACATACGGCAGCTTTCGTTGCTCCTTCGCCGAGCCATGC AGCAAAAAAGCAAGGATTCTGTGCAGGCTGTTCGGAGGTGGCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig119393:374..1470-

>mRNA_H-elongata_contig119393.1492.1 ID=mRNA_H-elongata_contig119393.1492.1|Name=mRNA_H-elongata_contig119393.1492.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig119393:374..1470- (Himanthalia elongata Himel1 dioecious)
GTTCGGCTGCTGGCCTACCTTCGGGTGCGCCAGATGGCCGAGGGGCTGCC
TTTCCCCTTCATGGAGAGCTGCATGAGGGGGCTGTACCTCGCCTTCGCCA
AGCGGGCCAGGGCGCCGCCGCCTACGGAGGCAGGCAAGACGTCGCTCAGG
GTCATGGAAGGGTTCGGCTGCTGGCCTACCTTCGGGTGCGCCAGATGGCC
GAGGGGCTGCCTTTCCCCTTCATGGAGAGCTGCATGAGGGGGCTGTACCT
CGCCTTCGCCAAGCGGGCCAGGGCGCCGCCGCCTACGGAGGCAGGCAAGA
CGTCGCTCAGGGTCATGGAAGGGTGTGTGGTGGAGCTGTACGGCATGGAC
GGGGCATCGGCCTACCAAAACGCCTTCCTGTACATACGGCAGCTTTCGTT
GCTCCTTCGCCGAGCCATGCAGCAAAAAAGCAAGGATTCTGTGCAGGCTG
TTCGGAGGTGGCAGGTAGTGTGTGGTGGAGCTGTACGGCATGGACGGGGC
ATCGGCCTACCAAAACGCCTTCCTGTACATACGGCAGCTTTCGTTGCTCC
TTCGCCGAGCCATGCAGCAAAAAAGCAAGGATTCTGTGCAGGCTGTTCGG
AGGTGGCAGGTA
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