mRNA_H-elongata_contig119342.1490.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119342.1490.1
Unique NamemRNA_H-elongata_contig119342.1490.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119342.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119342contigH-elongata_contig119342:1410..1843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size436
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.2646265-UTR-H-elongata_contig119342:1409..15341622929698.2646265-UTR-H-elongata_contig119342:1409..1534Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119342 1410..1534 +
1691679123.1993234-UTR-H-elongata_contig119342:1409..15341691679123.1993234-UTR-H-elongata_contig119342:1409..1534Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119342 1410..1534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.2799494-CDS-H-elongata_contig119342:1534..18431622929698.2799494-CDS-H-elongata_contig119342:1534..1843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119342 1535..1843 +
1691679123.2071571-CDS-H-elongata_contig119342:1534..18431691679123.2071571-CDS-H-elongata_contig119342:1534..1843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119342 1535..1843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119342.1490.1prot_H-elongata_contig119342.1490.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119342 1535..1843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119342.1490.1

>prot_H-elongata_contig119342.1490.1 ID=prot_H-elongata_contig119342.1490.1|Name=mRNA_H-elongata_contig119342.1490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MAAHHVAPTGGGVKDASKDVVGADAPCESLAANQGNSRGRFVEISPTTVF
WASTPHDPAYQRAAAARASALAEASPQQQRLRRSCDFCFRRKRKCDGDGI
NRC
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mRNA from alignment at H-elongata_contig119342:1410..1843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119342.1490.1 ID=mRNA_H-elongata_contig119342.1490.1|Name=mRNA_H-elongata_contig119342.1490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=434bp|location=Sequence derived from alignment at H-elongata_contig119342:1410..1843+ (Himanthalia elongata Himel1 dioecious)
ACAGTCCCGATTGGCATAATCTGATAACAACAACATCGTTTAAAGGGTTG
GTACTGGTAGATCGAGCGGATCAATTGATCAATAGCCTTCACTCGTTATA
ATTCAGGGAAAGAAGCTGAGAAACGATGGCGGCACACCACGTAGCCCCGA
CAGGTGGTGGTGTAAAGGACGCATCTAAGGATGTCGTTGGCGCCGATGCT
CCTTGCGAGAGCTTGGCGGCGAACCAGGGAAACTCCAGAGGGAGGTTTGT
CGAAATTTCACCAACGACAGTTTTTTGGGCCTCAACTCCCCATGACCCGG
CCTACCAGCGAGCAGCAGCAGCAAGAGCATCAGCCTTGGCCGAAGCATCT
CCACAGCAGCAGAGACTGCGCAGGAGTTGTGACTTCTGCTTTAGGCGCAA
GAGAAAATGCGATGGAGACGGCATCAATCGATGC
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Coding sequence (CDS) from alignment at H-elongata_contig119342:1410..1843+

>mRNA_H-elongata_contig119342.1490.1 ID=mRNA_H-elongata_contig119342.1490.1|Name=mRNA_H-elongata_contig119342.1490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig119342:1410..1843+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCACACCACGTAGCCCCGACAGGTGGTGGTGTAAAGGACGCATC
TAAGGATGTCGTTGGCGCCGATGCTCCTTGCGAGAGCTTGGCGGCGAACC
AGGGAAACTCCAGAGGGAGGTTTGTCGAAATTTCACCAACGACAGTTTTT
TGGGCCTCAACTCCCCATGACCCGGCCTACCAGCGAGCAGCAGCAGCAAG
AGCATCAGCCTTGGCCGAAGCATCTCCACAGCAGCAGAGACTGCGCAGGA
GTTGTGACTTCTGCTTTAGGCGCAAGAGAAAATGCGATGGAGACGGCATC
AATCGATGCATGGCGGCACACCACGTAGCCCCGACAGGTGGTGGTGTAAA
GGACGCATCTAAGGATGTCGTTGGCGCCGATGCTCCTTGCGAGAGCTTGG
CGGCGAACCAGGGAAACTCCAGAGGGAGGTTTGTCGAAATTTCACCAACG
ACAGTTTTTTGGGCCTCAACTCCCCATGACCCGGCCTACCAGCGAGCAGC
AGCAGCAAGAGCATCAGCCTTGGCCGAAGCATCTCCACAGCAGCAGAGAC
TGCGCAGGAGTTGTGACTTCTGCTTTAGGCGCAAGAGAAAATGCGATGGA
GACGGCATCAATCGATGC
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