mRNA_H-elongata_contig11933.1487.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11933.1487.1
Unique NamemRNA_H-elongata_contig11933.1487.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11933.1487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11933contigH-elongata_contig11933:2056..3997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size433
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11933.1487.1prot_H-elongata_contig11933.1487.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11933 2064..3833 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.9081407-UTR-H-elongata_contig11933:2055..20631622929697.9081407-UTR-H-elongata_contig11933:2055..2063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11933 2056..2063 +
1691679123.0676374-UTR-H-elongata_contig11933:2055..20631691679123.0676374-UTR-H-elongata_contig11933:2055..2063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11933 2056..2063 +
1622929697.9487443-UTR-H-elongata_contig11933:3833..39971622929697.9487443-UTR-H-elongata_contig11933:3833..3997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11933 3834..3997 +
1691679123.0895205-UTR-H-elongata_contig11933:3833..39971691679123.0895205-UTR-H-elongata_contig11933:3833..3997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11933 3834..3997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.9223235-CDS-H-elongata_contig11933:2063..21341622929697.9223235-CDS-H-elongata_contig11933:2063..2134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11933 2064..2134 +
1691679123.074867-CDS-H-elongata_contig11933:2063..21341691679123.074867-CDS-H-elongata_contig11933:2063..2134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11933 2064..2134 +
1622929697.9361367-CDS-H-elongata_contig11933:3643..38331622929697.9361367-CDS-H-elongata_contig11933:3643..3833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11933 3644..3833 +
1691679123.0823045-CDS-H-elongata_contig11933:3643..38331691679123.0823045-CDS-H-elongata_contig11933:3643..3833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11933 3644..3833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11933.1487.1

>prot_H-elongata_contig11933.1487.1 ID=prot_H-elongata_contig11933.1487.1|Name=mRNA_H-elongata_contig11933.1487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MGSKTSGSGSGGSSADVVREGSARNMPLLRIAGPWPDPFLFSPFPHVASP
HEYTTAEDSRTIAAPQQDNSHGPQRTTTDSPRPYRS*
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mRNA from alignment at H-elongata_contig11933:2056..3997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11933.1487.1 ID=mRNA_H-elongata_contig11933.1487.1|Name=mRNA_H-elongata_contig11933.1487.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1942bp|location=Sequence derived from alignment at H-elongata_contig11933:2056..3997+ (Himanthalia elongata Himel1 dioecious)
ACCAATCGATGGGATCTAAAACTAGCGGCAGCGGCAGCGGCGGGTCTTCC
GCCGACGTGGTTCGTGAGGGCTCTGCCAGGTACTTACTCTCTTATCACTA
TACACTTATCAGCAATAGTGAGCTTAAGGTGCTCACACACACACACACAC
AAATGACAGTATTGCCCCCGACGCTGCACACCATGATCCCCCGTTTCCCT
CTATCGTTATCGTCGCTCGTGTTCCCTTAAAACCCCTTCTCATTATTTTC
GAAACGCTTGCCGTGAAATGGTGGTACTACGCGCACCTGCCTGTCCATCT
GTGTCTGTTATTGGTTATTGAGCAAACCGACATGGTATCTCGACGGAGGA
CAGCGACATGAGCGACGAAGATATGTGGGGATGGTTCGACGAGCTCGAGG
ACATGGAGGAAAGGGGAAGGAGTGACTCTGGTACGGACGCTCCTCATGTG
ACAAAGGCCAGGCATTGACCTGAACCCCTTCCCAACTCCGGTCTTGGGTG
GGCTACCCTTGACGAAAGACGACTTTAACGCACTGTTACACCCGGATTAT
CGCGTGGCCGCCCGCGGTGGGTTCGCCGCGTCCGCCACTCAAGCGCCTCC
TCCGAAACTTCGTCTCGCTCATCACCGCTTCCGCGTCCGGCCGCCTAGGC
TCCACGATCTCTATGTGTTGCCAGACATCGCCTTGTCTTGCCTTACCTCG
CCTGACGCCGGCCTCCAAGTCCCAATTGGACCACTCGCCACTCGCAGAGC
CCCCTTACAATGATGTTAACATACCCAGACATCGCTTTGCCTAGCCTCGT
CTGACGCCGGCTTCCAAGTCCAAAATGGATCACTCGCTGCTCGCAGAGCC
CCCTATTATGCAAAACTTGCCCTAACCTTTACGAAGCTGCTAACATGCTC
AGACATATTCCGGTCGGTCTTACTCAATACGTTTTACATACTTTCGCGAC
AAAGTCGCCCATATACCACGTCACTACCGTTGACGTCACAACTCAGGCCT
CGTCCAGATCGAACTCCCCCAATTGGCCTATAATATGGCACTCCTTTGAC
GCCCCTTGCGGCCCCTGGTGCATCTACCACGTCACTACTGTTGCTGTCAT
CACCCTAGTCTCGTCCTGATCTAACTACCCCAAGTGGCCTATAATATGGC
ACTTCTTTGACGCCCCTTGCGGCCTCTGGTGCATCCACCTCACGAGTAAT
CCACCCCCCTTATGGATTTTTACACGGCTAAAACCCCCTCTTTTTTATTG
TAGCCTCCATCTTGTTCGACTCCTTTGACGGCTCTTTGGTGGCTAAGTAA
AGACAACCAACCCCCTAATGACCCCGGGCGTTACGTTGTCAGATTTCTTG
ACAACCCAGGCCCCGTCCTGATCAAACCCTCCGACTCGGCCTATAACACG
GTCCTCCACGCCCCTTGCGGCTCCTGGTTCCTCGAAACCCCTGGACGATT
TAATCCCCTAATGGTGTCTTACACGGCTAACACCCTTTTCTCTCCCCCTC
CCCCACAGGACCACGATGTCAACGTCCTATTCGACTCATTCTTGCACGTT
CCCCCTTTTTCCCTTACCCCCATGCCGTGCCTCCACAGGAATATGCCATT
GCTGAGGATAGCCGGACCATGGCCGGACCCCTTCTTATTTTCTCCCTTCC
CTCATGTCGCGTCTCCACACGAATATACCACGGCCGAGGATAGCCGGACC
ATAGCCGCACCCCAGCAGGACAATAGCCACGGACCACAACGAACGACAAC
GGATTCACCAAGACCTTACCGTAGTTAGCACCATCGTTGCGGTAGCCCCC
TCCCCTCAGCGTGACGCCGCTTAAGCCAAGGCGCGCCTTTAAGTCTGATA
GTGATCCCCACTTGCGTAGATCGTAGAAAGAGACTAACGCCTTAATTCCG
TAGACCGAAGATTTCGAGTCCCCCCTTGCGTAGATCGTAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig11933:2056..3997+

>mRNA_H-elongata_contig11933.1487.1 ID=mRNA_H-elongata_contig11933.1487.1|Name=mRNA_H-elongata_contig11933.1487.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig11933:2056..3997+ (Himanthalia elongata Himel1 dioecious)
ATGGGATCTAAAACTAGCGGCAGCGGCAGCGGCGGGTCTTCCGCCGACGT
GGTTCGTGAGGGCTCTGCCAGATGGGATCTAAAACTAGCGGCAGCGGCAG
CGGCGGGTCTTCCGCCGACGTGGTTCGTGAGGGCTCTGCCAGGAATATGC
CATTGCTGAGGATAGCCGGACCATGGCCGGACCCCTTCTTATTTTCTCCC
TTCCCTCATGTCGCGTCTCCACACGAATATACCACGGCCGAGGATAGCCG
GACCATAGCCGCACCCCAGCAGGACAATAGCCACGGACCACAACGAACGA
CAACGGATTCACCAAGACCTTACCGTAGTTAGGAATATGCCATTGCTGAG
GATAGCCGGACCATGGCCGGACCCCTTCTTATTTTCTCCCTTCCCTCATG
TCGCGTCTCCACACGAATATACCACGGCCGAGGATAGCCGGACCATAGCC
GCACCCCAGCAGGACAATAGCCACGGACCACAACGAACGACAACGGATTC
ACCAAGACCTTACCGTAGTTAG
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