mRNA_H-elongata_contig119243.1483.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119243.1483.1
Unique NamemRNA_H-elongata_contig119243.1483.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI)

HSP 1 Score: 121 bits (304), Expect = 2.380e-30
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTS--IFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
            F +KD+GEASY +G +I+RDR+ G L   Q  YI  + ERF + K S  I P   G K  S +  P  ++E ++M QIP   IVG+LM+A T TRP ISFA   L ++  NPG  HW+AA+K L+YL  T+D  +TY
Sbjct:  185 FEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRYLQGTKDRMLTY 320          
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.250e-30
Identity = 60/139 (43.17%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGL--TKTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITYGG 411
            F +K+LGEA + LG +I  DR  GTL   Q +Y+  +  RF     K  + P   G K LSK+ SP TD E E+MR  P + ++G+L++  T TRPD+++   QL++F +NPG  HW+AA + L+YL  T+D GI Y G
Sbjct:  130 FKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMK-LSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSG 267          
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 120 bits (301), Expect = 4.310e-29
Identity = 65/138 (47.10%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLT--KTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITYG 408
            F ++DLG  SY LG +ITR+R    L   Q QYI    E FG+T  K +  P       LSKS SP T  EVEEM +IP    VG+L++  TMTRPDI++ A  LA+FN NPG  HW+A +  L+YL  T D+ + YG
Sbjct:  308 FKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPN-LILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEYG 444          
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A6H5J9U3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.250e-28
Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    4 PIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
            P K+LGE  ++LGC   RDR AGT+   Q  YI+++ ERF + +TS  P  A    +++S      +E EE   +P RE+VG LMW  + TRPDIS A   +A+ ++ P  +HW+AAQK L YL  T  L + +
Sbjct:   11 PTKNLGEVKFFLGCAYRRDREAGTIEISQESYIRSVLERFNVVRTSSIP--ASPTVVNRSV-----MENEEAGDVPFREVVGCLMWIASQTRPDISNAVRAVARHSNEPKLSHWKAAQKILNYLLGTAHLSLNF 137          
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A401GID0_9APHY (Transposon Ty5-1 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GID0_9APHY)

HSP 1 Score: 114 bits (285), Expect = 7.350e-28
Identity = 62/137 (45.26%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKT-SIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITYG 408
            F ++DLG   + LG  I RDR   T++  Q QYI  M E +GL+   S+   +  G  LSK+ +P T  E E MR++P    VGALM+    TRPDI FA   LA+FN NPGPTHW A +    YL  T DL + YG
Sbjct:   52 FKLRDLGSTQFLLGIDIKRDRAKHTISLSQRQYIVDMLECYGLSDCKSVSTPMDPGAELSKALAPQTQEETEYMRKVPYLSAVGALMYLAITTRPDIMFAISCLARFNANPGPTHWIAVKHVFCYLKGTMDLRLHYG 188          
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A251UJK4_HELAN (Putative zinc finger, CCHC-type n=7 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UJK4_HELAN)

HSP 1 Score: 117 bits (292), Expect = 9.630e-28
Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLT--KTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
            F +KDLG+ASY +G +I RDR+ G L   Q  YI  +  R+ +   K S+ P V G         P T+VE E+M QIP   +VG+LM+A   TRPDI++ A  L ++  NPG  HW+AA+K L+YL  T+D  +TY
Sbjct: 1016 FDMKDLGDASYVIGIEIHRDRHKGILGLSQKAYIDRVLTRYNMQQCKPSVAPVVKGDV-FGSFQCPTTEVEKEQMSQIPYASVVGSLMYAQVCTRPDIAYIAGMLGRYQTNPGLDHWKAAKKVLRYLQGTKDYKLTY 1151          
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A060S825_PYCCI (CCHC-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S825_PYCCI)

HSP 1 Score: 116 bits (291), Expect = 1.330e-27
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGL-TKTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITYG 408
            F + DLG   + LG ++ RDR A T+   Q  YI T+A RF L T   +   +  G  L++S SP T  +V +M  +P RE VG+LM+AV  TRPDI+FA   L++F  NPG  HW A ++ ++YL  TR+L + YG
Sbjct: 1184 FEMSDLGAMRWILGIEVQRDRQARTIAISQRTYIDTVAARFNLETANPVSTPLQPGGVLTRSQSPSTPHQVADMSNVPYREAVGSLMYAVMGTRPDIAFAVTTLSQFMQNPGRAHWEAVKRVIRYLVGTRELWLVYG 1320          
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: Q572I3_PHYIN (Putative polyprotein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=Q572I3_PHYIN)

HSP 1 Score: 115 bits (289), Expect = 2.460e-27
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTSIFPF-VAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
            F +K+LGEA + LG +I  DR  GTL   Q +YI  + ERF      +  +  A    LSK  SP T+ E  EM   P R ++G LM+  T TRPDI++   QLA+F ++PG  HW+AA + LQYL  TR  GI Y
Sbjct: 1046 FKMKELGEAKFILGMEIDHDRECGTLMIKQTRYIDDIVERFNQRNAKMVEYPCAANLKLSKMMSPTTEKERAEMWSRPYRSLIGCLMYITTCTRPDIAYVVTQLARFLEDPGTQHWKAAIRVLQYLKSTRHHGIVY 1181          
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A182H216_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H216_AEDAL)

HSP 1 Score: 111 bits (278), Expect = 5.290e-27
Identity = 55/127 (43.31%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTSIF--PFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 375
            F +KDLG+A Y LG QI+R++  G L+ DQ +YI+ + +RF LT       PF +  + L KS +P +  E+EEM+++P +E VG L +    TRPDISFA + +++F+ NPG  HW A ++ L+YL
Sbjct:   32 FRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLTDCHPVSTPFESSER-LDKSMTPKSQDEIEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRILRYL 157          
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A151T328_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T328_CAJCA)

HSP 1 Score: 112 bits (279), Expect = 1.160e-26
Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTSIFPF-VAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
            F +KD+GEASY +G +I RDR+ G L   Q  YI  + ERF + K S  P  +  G   S +  P  D+E ++M  I     VG++++    TRPDISFAA  L ++  NPG  HW+AA+K L+YL  T+   +TY
Sbjct:  100 FEMKDMGEASYVIGIEIFRDRSQGLLGLSQKAYINKVLERFRMEKCSASPVPIQKGDKFSLTQCPKNDLERKQMEVISYASFVGSIIYTQICTRPDISFAARMLGRYQSNPGMEHWKAAKKVLRYLQGTKCHMLTY 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4V1T029_9SPHI2.380e-3046.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3J8V8_9STRA4.250e-3043.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
E2LZP6_MONPE4.310e-2947.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J9U3_9PHAE1.250e-2841.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A401GID0_9APHY7.350e-2845.26Transposon Ty5-1 protein n=1 Tax=Sparassis crispa ... [more]
A0A251UJK4_HELAN9.630e-2843.80Putative zinc finger, CCHC-type n=7 Tax=Helianthus... [more]
A0A060S825_PYCCI1.330e-2743.07CCHC-type domain-containing protein n=1 Tax=Pycnop... [more]
Q572I3_PHYIN2.460e-2744.12Putative polyprotein n=1 Tax=Phytophthora infestan... [more]
A0A182H216_AEDAL5.290e-2743.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151T328_CAJCA1.160e-2641.91Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119243contigH-elongata_contig119243:24..434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog28532.XP_010559036.1
EggNOG free text desc.domain in FBox and BRCT domain containing plant proteins
EggNOG OGs389MP@33090,3GYT9@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.6844268-CDS-H-elongata_contig119243:23..2181622929697.6844268-CDS-H-elongata_contig119243:23..218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119243 24..218 -
1691679122.9212265-CDS-H-elongata_contig119243:23..2181691679122.9212265-CDS-H-elongata_contig119243:23..218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119243 24..218 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.6945653-UTR-H-elongata_contig119243:218..4341622929697.6945653-UTR-H-elongata_contig119243:218..434Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119243 219..434 -
1691679122.9306564-UTR-H-elongata_contig119243:218..4341691679122.9306564-UTR-H-elongata_contig119243:218..434Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119243 219..434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119243.1483.1prot_H-elongata_contig119243.1483.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119243 24..218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119243.1483.1

>prot_H-elongata_contig119243.1483.1 ID=prot_H-elongata_contig119243.1483.1|Name=mRNA_H-elongata_contig119243.1483.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKAL
QYLWCTRDLGITYGG
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mRNA from alignment at H-elongata_contig119243:24..434-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119243.1483.1 ID=mRNA_H-elongata_contig119243.1483.1|Name=mRNA_H-elongata_contig119243.1483.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig119243:24..434- (Himanthalia elongata Himel1 dioecious)
TTCCCCATTAAGGATCTGGGGGAGGCTTCGTATTACCTGGGATGCCAAAT CACGCGGGACCGGAACGCCGGAACACTGACGTTCGACCAGCATCAGTACA TACAGACTATGGCGGAACGTTTTGGCCTGACGAAGACCAGCATCTTCCCG TTCGTGGCAGGAGGAAAATCCCTTTCGAAATCAGACAGCCCGTAAACGGA CGTAGAGGTTGAAGAAATGCGCCAGATTCCCAACCGAGAAATCGTTGGGG CCCTAATGTGGGCAGTGACGATGACCAGGCCCGACATTTCATTCGCTGCG CACCAACTGGCGAAATTCAACGACAACCCGGGACCGACACACTGGAGGGC AGCCCAGAAAGCGCTGCAATATTTATGGTGCACTCGGGACCTCGGGATCA CCTACGGAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig119243:24..434-

>mRNA_H-elongata_contig119243.1483.1 ID=mRNA_H-elongata_contig119243.1483.1|Name=mRNA_H-elongata_contig119243.1483.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig119243:24..434- (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGATTCCCAACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGT
GACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGCGAAAT
TCAACGACAACCCGGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTG
CAATATTTATGGTGCACTCGGGACCTCGGGATCACCTACGGAGGGATGCG
CCAGATTCCCAACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGTGACGA
TGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGCGAAATTCAAC
GACAACCCGGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATA
TTTATGGTGCACTCGGGACCTCGGGATCACCTACGGAGGG
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