mRNA_H-elongata_contig119162.1481.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119162.1481.1
Unique NamemRNA_H-elongata_contig119162.1481.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119162.1481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119162contigH-elongata_contig119162:1295..1950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.6088872-CDS-H-elongata_contig119162:1294..14141622929697.6088872-CDS-H-elongata_contig119162:1294..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119162 1295..1414 +
1691679122.8801172-CDS-H-elongata_contig119162:1294..14141691679122.8801172-CDS-H-elongata_contig119162:1294..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119162 1295..1414 +
1622929697.620669-CDS-H-elongata_contig119162:1785..19501622929697.620669-CDS-H-elongata_contig119162:1785..1950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119162 1786..1950 +
1691679122.8888638-CDS-H-elongata_contig119162:1785..19501691679122.8888638-CDS-H-elongata_contig119162:1785..1950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119162 1786..1950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119162.1481.1prot_H-elongata_contig119162.1481.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119162 1295..1950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119162.1481.1

>prot_H-elongata_contig119162.1481.1 ID=prot_H-elongata_contig119162.1481.1|Name=mRNA_H-elongata_contig119162.1481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
SPVRTHPHLVAFLLFNTETIRMAATSTVNMSSKADAAQRQVSIYSLYAAD
VAAGLGSSFLVSPSITILDRAISMNASGAMKTVDSVRCDFGNTS*
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mRNA from alignment at H-elongata_contig119162:1295..1950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119162.1481.1 ID=mRNA_H-elongata_contig119162.1481.1|Name=mRNA_H-elongata_contig119162.1481.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=656bp|location=Sequence derived from alignment at H-elongata_contig119162:1295..1950+ (Himanthalia elongata Himel1 dioecious)
TCTCCAGTTCGCACCCACCCTCACCTAGTAGCATTTCTGCTGTTCAATAC
TGAGACCATCAGAATGGCGGCTACTAGTACGGTGAACATGAGCTCTAAGG
CCGACGCGGCACAGAGACAGGTAAAGATTGTAACCACGCCCGTTCGTTAG
TTCATACCGCCAGCCAGTGGCTCAAACATCCGCGTGGCGCAAGCTGTCCC
TCTTTCAGTAGCACTAATAATTATGCGGGATTTTATGAAGTTAGTTGTTA
TTTTACTTACACGTATCATATACCCCTTTTTGTGCCATGAAATGTAGCGC
AGTGGCCAAACCTAAGGGCTACGACGAACCAACAGCAGTGCATGTGGCCT
AACTGCACCTGCTCCATACCCTGAACCGTCATTCTTAAGCCACTGCACAA
CGGTCGATTGACAGAAGAAGTCATACCCTTCCCGTTACCCTGCGGTCTGT
TCGTTCGTGCTACTTTTGTTCCCTCTCAAAAACCTACACAGGTATCGATC
TACTCGCTCTATGCAGCTGACGTGGCCGCTGGCCTTGGGTCGTCCTTCCT
CGTGTCCCCAAGCATCACGATCTTGGACCGAGCTATATCGATGAACGCTA
GCGGAGCGATGAAGACAGTCGACTCCGTCAGGTGTGACTTTGGGAATACC
AGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig119162:1295..1950+

>mRNA_H-elongata_contig119162.1481.1 ID=mRNA_H-elongata_contig119162.1481.1|Name=mRNA_H-elongata_contig119162.1481.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig119162:1295..1950+ (Himanthalia elongata Himel1 dioecious)
TCTCCAGTTCGCACCCACCCTCACCTAGTAGCATTTCTGCTGTTCAATAC
TGAGACCATCAGAATGGCGGCTACTAGTACGGTGAACATGAGCTCTAAGG
CCGACGCGGCACAGAGACAGTCTCCAGTTCGCACCCACCCTCACCTAGTA
GCATTTCTGCTGTTCAATACTGAGACCATCAGAATGGCGGCTACTAGTAC
GGTGAACATGAGCTCTAAGGCCGACGCGGCACAGAGACAGGTATCGATCT
ACTCGCTCTATGCAGCTGACGTGGCCGCTGGCCTTGGGTCGTCCTTCCTC
GTGTCCCCAAGCATCACGATCTTGGACCGAGCTATATCGATGAACGCTAG
CGGAGCGATGAAGACAGTCGACTCCGTCAGGTGTGACTTTGGGAATACCA
GCTGAGTATCGATCTACTCGCTCTATGCAGCTGACGTGGCCGCTGGCCTT
GGGTCGTCCTTCCTCGTGTCCCCAAGCATCACGATCTTGGACCGAGCTAT
ATCGATGAACGCTAGCGGAGCGATGAAGACAGTCGACTCCGTCAGGTGTG
ACTTTGGGAATACCAGCTGA
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